mm9_v1_chr18_-_43552694_43552984	19.9941	SOX{8,9,10}.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr1_-_82232392_82232507	17.4656	SOX{8,9,10}.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr8_+_125935470_125935482	16.1011	SOX{8,9,10}.p2	AF312873|Tubb3|22152|tubulin, beta 3
mm9_v1_chr9_-_83040061_83040223	15.5766	SOX{8,9,10}.p2	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr1_+_45401659_45401671	14.3935	SOX{8,9,10}.p2	AK079113|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr3_-_57651621_57651757	14.1185	SOX{8,9,10}.p2	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr19_-_40588193_40588218	13.6762	SOX{8,9,10}.p2	AK122487|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr15_+_98465193_98465247	13.445	SOX{8,9,10}.p2	NM_007581|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AK148088|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr1_+_45401303_45401332	13.0466	SOX{8,9,10}.p2	AK159868|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr3_+_121160714_121160815	13.0346	SOX{8,9,10}.p2	AK181356|Cnn3|71994|calponin 3, acidic
mm9_v1_chr10_-_36858671_36858801	12.8806	SOX{8,9,10}.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr17_-_35975075_35975143	12.5601	SOX{8,9,10}.p2	X04663|Tubb5|22154|tubulin, beta 5
mm9_v1_chr19_-_15999377_15999548	12.311	SOX{8,9,10}.p2	AK035361|Psat1|107272|phosphoserine aminotransferase 1	AK162609|Psat1|107272|phosphoserine aminotransferase 1	AK167029|Psat1|107272|phosphoserine aminotransferase 1	AF259674|Psat1|107272|phosphoserine aminotransferase 1	AK145216|Psat1|107272|phosphoserine aminotransferase 1	AK168098|Psat1|107272|phosphoserine aminotransferase 1	AK169370|Psat1|107272|phosphoserine aminotransferase 1	AK145672|Psat1|107272|phosphoserine aminotransferase 1	AK166880|Psat1|107272|phosphoserine aminotransferase 1	AK090108|Psat1|107272|phosphoserine aminotransferase 1	AK049855|Psat1|107272|phosphoserine aminotransferase 1	AK168216|Psat1|107272|phosphoserine aminotransferase 1	AK167044|Psat1|107272|phosphoserine aminotransferase 1	BC004827|Psat1|107272|phosphoserine aminotransferase 1	NM_177420|Psat1|107272|phosphoserine aminotransferase 1	AK032487|Psat1|107272|phosphoserine aminotransferase 1
mm9_v1_chr9_-_49311823_49311910	12.1737	SOX{8,9,10}.p2	X07233|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr4_+_134024234_134024333	12.1562	SOX{8,9,10}.p2	NM_019641|Stmn1|16765|stathmin 1	AB064953|Stmn1|16765|stathmin 1	AK002606|Stmn1|16765|stathmin 1	AK012231|Stmn1|16765|stathmin 1	AK012347|Stmn1|16765|stathmin 1	AK014108|Stmn1|16765|stathmin 1	AK088628|Stmn1|16765|stathmin 1	AK013302|Stmn1|16765|stathmin 1	BC010581|Stmn1|16765|stathmin 1	BC031831|Stmn1|16765|stathmin 1	BC054396|Stmn1|16765|stathmin 1
mm9_v1_chr19_-_40588235_40588251	12.14	SOX{8,9,10}.p2	U58883|Sorbs1|20411|sorbin and SH3 domain containing 1	AK035212|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr6_+_122463595_122463620	11.7163	SOX{8,9,10}.p2	AK011458|Mfap5|50530|microfibrillar associated protein 5
mm9_v1_chr1_-_194677940_194677940	11.4693	SOX{8,9,10}.p2	NM_001177794|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr19_+_44368557_44368575	11.4002	SOX{8,9,10}.p2	AK083922|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr18_-_16967754_16967859	10.9534	SOX{8,9,10}.p2	AK146981|Cdh2|12558|cadherin 2
mm9_v1_chr12_+_110784600_110784655	10.8964	SOX{8,9,10}.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr16_-_85080242_85080258	10.8274	SOX{8,9,10}.p2	BC005490|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_-_75236085_75236151	10.7192	SOX{8,9,10}.p2	D50460|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1	NM_011340|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm9_v1_chr11_-_75236018_75236075	10.4614	SOX{8,9,10}.p2	AF017057|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1	BC019852|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1	AK012411|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm9_v1_chr10_+_85763267_85763281	10.4246	SOX{8,9,10}.p2	Z30970|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr2_+_152561983_152562076	10.3986	SOX{8,9,10}.p2	M31885|Id1|15901|inhibitor of DNA binding 1	AK008264|Id1|15901|inhibitor of DNA binding 1	BC025073|Id1|15901|inhibitor of DNA binding 1	NM_010495|Id1|15901|inhibitor of DNA binding 1	U43884|Id1|15901|inhibitor of DNA binding 1	AB221668|Id1|15901|inhibitor of DNA binding 1	CT010243|Id1|15901|inhibitor of DNA binding 1
mm9_v1_chr3_+_7503409_7503519	10.3572	SOX{8,9,10}.p2	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr8_+_26629868_26629903	10.338	SOX{8,9,10}.p2	X51893|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr2_-_125331264_125331360	10.286	SOX{8,9,10}.p2	U19972|Fbn1|14118|fibrillin 1	AF007248|Fbn1|14118|fibrillin 1
mm9_v1_chr19_-_40588219_40588234	10.285	SOX{8,9,10}.p2	AK087553|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_178362|Sorbs1|20411|sorbin and SH3 domain containing 1	BC012703|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr12_-_103057112_103057240	10.2196	SOX{8,9,10}.p2	AK165018|Fbln5|23876|fibulin 5	AK085170|Fbln5|23876|fibulin 5	AK084895|Fbln5|23876|fibulin 5
mm9_v1_chr15_+_98465328_98465599	10.1376	SOX{8,9,10}.p2	U20372|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498245|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498246|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr11_+_44431601_44431727	10.0905	SOX{8,9,10}.p2	AK141175|Ebf1|13591|early B-cell factor 1	AK051438|Ebf1|13591|early B-cell factor 1	AK139021|Ebf1|13591|early B-cell factor 1	AK031239|Ebf1|13591|early B-cell factor 1	L12147|Ebf1|13591|early B-cell factor 1	NM_007897|Ebf1|13591|early B-cell factor 1	BC139362|Ebf1|13591|early B-cell factor 1	BC139364|Ebf1|13591|early B-cell factor 1	AK137389|Ebf1|13591|early B-cell factor 1	AK035781|Ebf1|13591|early B-cell factor 1
mm9_v1_chrX_+_54032914_54032920	10.0258	SOX{8,9,10}.p2	BC029024|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr16_-_22439642_22439745	10.0157	SOX{8,9,10}.p2	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chr1_+_12682572_12682637	9.98816	SOX{8,9,10}.p2	AK028285|Sulf1|240725|sulfatase 1	AK045002|Sulf1|240725|sulfatase 1
mm9_v1_chr8_+_125935441_125935463	9.87288	SOX{8,9,10}.p2	AK012528|Tubb3|22152|tubulin, beta 3	AK051298|Tubb3|22152|tubulin, beta 3	AK082942|Tubb3|22152|tubulin, beta 3	AK149014|Tubb3|22152|tubulin, beta 3	BC088749|Tubb3|22152|tubulin, beta 3	BC031357|Tubb3|22152|tubulin, beta 3	NM_023279|Tubb3|22152|tubulin, beta 3
mm9_v1_chr10_+_85763287_85763288	9.7369	SOX{8,9,10}.p2	L27424|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr3_+_90280032_90280140	9.69775	SOX{8,9,10}.p2	AK135449|Ilf2|67781|interleukin enhancer binding factor 2	AK161127|Ilf2|67781|interleukin enhancer binding factor 2	AK031892|Ilf2|67781|interleukin enhancer binding factor 2	AK157129|Ilf2|67781|interleukin enhancer binding factor 2	AK013858|Ilf2|67781|interleukin enhancer binding factor 2	AK044885|Ilf2|67781|interleukin enhancer binding factor 2	AK161126|Ilf2|67781|interleukin enhancer binding factor 2	BC024718|Ilf2|67781|interleukin enhancer binding factor 2	NM_026374|Ilf2|67781|interleukin enhancer binding factor 2	AK012364|Ilf2|67781|interleukin enhancer binding factor 2	AK078003|Ilf2|67781|interleukin enhancer binding factor 2	AK135539|Ilf2|67781|interleukin enhancer binding factor 2
mm9_v1_chr18_+_37839910_37840111	9.65989	SOX{8,9,10}.p2	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr19_-_10944196_10944284	9.633	SOX{8,9,10}.p2	BC006896|Tmem132a|98170|transmembrane protein 132A	AK173207|Tmem132a|98170|transmembrane protein 132A	AK036651|Tmem132a|98170|transmembrane protein 132A	AK032956|Tmem132a|98170|transmembrane protein 132A	AK048556|Tmem132a|98170|transmembrane protein 132A	AK164646|Tmem132a|98170|transmembrane protein 132A	NM_133804|Tmem132a|98170|transmembrane protein 132A
mm9_v1_chr6_+_122463663_122463700	9.5787	SOX{8,9,10}.p2	AK003479|Mfap5|50530|microfibrillar associated protein 5	AF180805|Mfap5|50530|microfibrillar associated protein 5	NM_015776|Mfap5|50530|microfibrillar associated protein 5	BC025131|Mfap5|50530|microfibrillar associated protein 5
mm9_v1_chr12_+_76409299_76409440	9.49328	SOX{8,9,10}.p2	AK166409|Rhoj|80837|ras homolog gene family, member J	AK166480|Rhoj|80837|ras homolog gene family, member J	NM_023275|Rhoj|80837|ras homolog gene family, member J	BC054464|Rhoj|80837|ras homolog gene family, member J	BC043719|Rhoj|80837|ras homolog gene family, member J	AK159385|Rhoj|80837|ras homolog gene family, member J	AB060651|Rhoj|80837|ras homolog gene family, member J	AK042583|Rhoj|80837|ras homolog gene family, member J	AK003482|Rhoj|80837|ras homolog gene family, member J	AK003490|Rhoj|80837|ras homolog gene family, member J	AK156619|Rhoj|80837|ras homolog gene family, member J	AK171636|Rhoj|80837|ras homolog gene family, member J	AK157518|Rhoj|80837|ras homolog gene family, member J	BC024626|Rhoj|80837|ras homolog gene family, member J	BC060193|Rhoj|80837|ras homolog gene family, member J	AK185821|Rhoj|80837|ras homolog gene family, member J	AF309564|Rhoj|80837|ras homolog gene family, member J
mm9_v1_chr7_+_19876447_19876478	9.47442	SOX{8,9,10}.p2	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr5_+_143722032_143722059	9.41793	SOX{8,9,10}.p2	NM_007984|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK083935|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK167670|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC052408|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC029281|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC010338|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC037137|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	L33726|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm9_v1_chr13_-_60278859_60278952	9.34781	SOX{8,9,10}.p2	NM_008086|Gas1|14451|growth arrest specific 1
mm9_v1_chr12_+_110783786_110783839	9.32636	SOX{8,9,10}.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chr10_+_85763294_85763302	9.18959	SOX{8,9,10}.p2	AK082483|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK128943|Timp3|21859|tissue inhibitor of metalloproteinase 3	AB041611|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK083905|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK147847|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr7_+_89319717_89319836	9.16873	SOX{8,9,10}.p2	NM_017400|Sh3gl3|20408|SH3-domain GRB2-like 3	AK012114|Sh3gl3|20408|SH3-domain GRB2-like 3	BC100453|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr11_-_95936914_95937007	9.08689	SOX{8,9,10}.p2	BC003854|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008191|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK009883|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_001161419|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011432|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008998|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011054|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK167884|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK010868|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_007506|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm9_v1_chr12_-_103056971_103057106	9.05258	SOX{8,9,10}.p2	AK208765|Fbln5|23876|fibulin 5	AK178699|Fbln5|23876|fibulin 5	BC006636|Fbln5|23876|fibulin 5	AK159189|Fbln5|23876|fibulin 5
mm9_v1_chr9_+_106356125_106356294	8.93655	SOX{8,9,10}.p2	NM_021567|Pcbp4|59092|poly(rC) binding protein 4	AK004580|Pcbp4|59092|poly(rC) binding protein 4	AK005383|Pcbp4|59092|poly(rC) binding protein 4	AK077632|Pcbp4|59092|poly(rC) binding protein 4	AK082005|Pcbp4|59092|poly(rC) binding protein 4	BC010694|Pcbp4|59092|poly(rC) binding protein 4	AF176328|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr18_-_16966954_16967033	8.92553	SOX{8,9,10}.p2	AK087418|Cdh2|12558|cadherin 2	BC022107|Cdh2|12558|cadherin 2	AK032826|Cdh2|12558|cadherin 2
mm9_v1_chr10_+_85763303_85763334	8.91304	SOX{8,9,10}.p2	BC014713|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr6_+_34548512_34548642	8.9074	SOX{8,9,10}.p2	AK032849|Cald1|109624|caldesmon 1	AK050642|Cald1|109624|caldesmon 1	BC055908|Cald1|109624|caldesmon 1
mm9_v1_chr3_+_121426422_121426632	8.90709	SOX{8,9,10}.p2	BC024886|F3|14066|coagulation factor III	NM_010171|F3|14066|coagulation factor III	BC016397|F3|14066|coagulation factor III	M26071|F3|14066|coagulation factor III	AK137642|F3|14066|coagulation factor III	AK144872|F3|14066|coagulation factor III	M57896|F3|14066|coagulation factor III	CT010367|F3|14066|coagulation factor III
mm9_v1_chr8_+_26629736_26629790	8.85714	SOX{8,9,10}.p2	S47233|Fgfr1|14182|fibroblast growth factor receptor 1	AK028354|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr5_+_37637027_37637257	8.82879	SOX{8,9,10}.p2	Y09080|Crmp1|12933|collapsin response mediator protein 1	AB006714|Crmp1|12933|collapsin response mediator protein 1	NM_007765|Crmp1|12933|collapsin response mediator protein 1	BC031738|Crmp1|12933|collapsin response mediator protein 1	U72875|Crmp1|12933|collapsin response mediator protein 1
mm9_v1_chr11_-_22185840_22185840	8.73953	SOX{8,9,10}.p2	AF424697|Ehbp1|216565|EH domain binding protein 1	NM_153078|Ehbp1|216565|EH domain binding protein 1
mm9_v1_chr11_+_29592897_29592944	8.73811	SOX{8,9,10}.p2	NM_194052|Rtn4|68585|reticulon 4	NM_194053|Rtn4|68585|reticulon 4	NM_194054|Rtn4|68585|reticulon 4
mm9_v1_chr18_-_33623287_33623340	8.73635	SOX{8,9,10}.p2	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr19_+_5474801_5474837	8.64037	SOX{8,9,10}.p2	BC012269|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm9_v1_chr18_+_37906739_37906841	8.63197	SOX{8,9,10}.p2	AY013793|Pcdhga10|93722|protocadherin gamma subfamily A, 10	NM_033593|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr19_+_44368165_44368165	8.62279	SOX{8,9,10}.p2	AK147406|Scd2|20250|stearoyl-Coenzyme A desaturase 2	NM_009128|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr3_+_90345082_90345194	8.60112	SOX{8,9,10}.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr18_+_37901716_37901894	8.59203	SOX{8,9,10}.p2	BC054556|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	NM_033578|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	AY013808|Pcdhgb6|93703|protocadherin gamma subfamily B, 6
mm9_v1_chr7_+_89319681_89319705	8.56131	SOX{8,9,10}.p2	BC027096|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr16_-_85901362_85901374	8.47717	SOX{8,9,10}.p2	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr11_+_29592946_29593072	8.31998	SOX{8,9,10}.p2	AK220511|Rtn4|68585|reticulon 4	AY102281|Rtn4|68585|reticulon 4	AY102282|Rtn4|68585|reticulon 4	AY102284|Rtn4|68585|reticulon 4	AY114152|Rtn4|68585|reticulon 4	AY114153|Rtn4|68585|reticulon 4	AK034902|Rtn4|68585|reticulon 4	BC056373|Rtn4|68585|reticulon 4
mm9_v1_chr12_+_30622876_30622919	8.30536	SOX{8,9,10}.p2	AK142872|Pxdn|69675|peroxidasin homolog (Drosophila)	NM_181395|Pxdn|69675|peroxidasin homolog (Drosophila)	BC150789|Pxdn|69675|peroxidasin homolog (Drosophila)	AK054255|Pxdn|69675|peroxidasin homolog (Drosophila)	AK163597|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr1_+_137625754_137625832	8.25354	SOX{8,9,10}.p2	AK087436|Csrp1|13007|cysteine and glycine-rich protein 1	NM_007791|Csrp1|13007|cysteine and glycine-rich protein 1	AK149025|Csrp1|13007|cysteine and glycine-rich protein 1	AK147089|Csrp1|13007|cysteine and glycine-rich protein 1	AK168984|Csrp1|13007|cysteine and glycine-rich protein 1	AK168922|Csrp1|13007|cysteine and glycine-rich protein 1	AK077787|Csrp1|13007|cysteine and glycine-rich protein 1	AK169720|Csrp1|13007|cysteine and glycine-rich protein 1	BC006912|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr18_-_43597640_43597708	8.24776	SOX{8,9,10}.p2	AK149024|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr8_+_98226914_98226962	8.11383	SOX{8,9,10}.p2	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr3_+_145421870_145422044	8.11169	SOX{8,9,10}.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr6_-_12699189_12699252	8.08863	SOX{8,9,10}.p2	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr1_+_172574668_172574695	8.00676	SOX{8,9,10}.p2	AK029292|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr15_+_98957150_98957201	7.9603	SOX{8,9,10}.p2	AK159335|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr15_-_103070263_103070286	7.95873	SOX{8,9,10}.p2	AK008792|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr17_+_44090139_44090183	7.93884	SOX{8,9,10}.p2	BC049096|Rcan2|53901|regulator of calcineurin 2	NM_030598|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr1_+_172574698_172574727	7.90339	SOX{8,9,10}.p2	AK172136|Olfml2b|320078|olfactomedin-like 2B	AK172499|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr11_+_32355355_32355458	7.8283	SOX{8,9,10}.p2	AK076953|Ubtd2|327900|ubiquitin domain containing 2	BC057026|Ubtd2|327900|ubiquitin domain containing 2	NM_173784|Ubtd2|327900|ubiquitin domain containing 2
mm9_v1_chr2_+_109757803_109757808	7.7659	SOX{8,9,10}.p2	NM_172671|Lgr4|107515|leucine-rich repeat-containing G protein-coupled receptor 4
mm9_v1_chr2_+_35516774_35517011	7.76287	SOX{8,9,10}.p2	AY305656|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr7_-_4465970_4466046	7.74894	SOX{8,9,10}.p2	AJ131711|Tnnt1|21955|troponin T1, skeletal, slow
mm9_v1_chr19_-_40588297_40588344	7.70146	SOX{8,9,10}.p2	NM_009166|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr11_-_65601657_65601750	7.68615	SOX{8,9,10}.p2	AK187893|Map2k4|26398|mitogen-activated protein kinase kinase 4	U18310|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr18_+_37911236_37911432	7.65339	SOX{8,9,10}.p2	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr1_+_172574662_172574663	7.58596	SOX{8,9,10}.p2	AK042424|Olfml2b|320078|olfactomedin-like 2B	NM_177068|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr13_-_60278723_60278734	7.53609	SOX{8,9,10}.p2	X65128|Gas1|14451|growth arrest specific 1
mm9_v1_chr8_-_11312686_11312717	7.48514	SOX{8,9,10}.p2	BC072650|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr7_-_31230564_31230571	7.48477	SOX{8,9,10}.p2	L04538|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr7_-_31230577_31230646	7.44251	SOX{8,9,10}.p2	BC021877|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	NM_007467|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr11_+_59476016_59476061	7.43168	SOX{8,9,10}.p2	BC063067|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr19_+_5475020_5475097	7.42832	SOX{8,9,10}.p2	AF104223|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm9_v1_chr11_-_75236012_75236016	7.41229	SOX{8,9,10}.p2	D87975|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1	AF036164|Serpinf1|20317|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm9_v1_chr19_+_27292039_27292085	7.4099	SOX{8,9,10}.p2	BC013622|Vldlr|22359|very low density lipoprotein receptor	L33417|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr4_+_17780739_17780875	7.40642	SOX{8,9,10}.p2	AK053598|Mmp16|17389|matrix metallopeptidase 16	AK048543|Mmp16|17389|matrix metallopeptidase 16	AK046170|Mmp16|17389|matrix metallopeptidase 16	AB021228|Mmp16|17389|matrix metallopeptidase 16	AF282844|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr2_-_30329717_30329736	7.36257	SOX{8,9,10}.p2	BC003464|Ier5l|72500|immediate early response 5-like	BC010234|Ier5l|72500|immediate early response 5-like	BC040084|Ier5l|72500|immediate early response 5-like	NM_030244|Ier5l|72500|immediate early response 5-like	AK012145|Ier5l|72500|immediate early response 5-like
mm9_v1_chr10_+_56097078_56097350	7.3271	SOX{8,9,10}.p2	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr12_+_31950097_31950203	7.2865	SOX{8,9,10}.p2	AK143079|Lamb1|16777|laminin B1	AK051131|Lamb1|16777|laminin B1	NM_008482|Lamb1|16777|laminin B1	AK147313|Lamb1|16777|laminin B1	AK164842|Lamb1|16777|laminin B1	BC150809|Lamb1|16777|laminin B1
mm9_v1_chr7_+_138079669_138079779	7.28068	SOX{8,9,10}.p2	NM_019564|Htra1|56213|HtrA serine peptidase 1	AK128916|Htra1|56213|HtrA serine peptidase 1	AK132270|Htra1|56213|HtrA serine peptidase 1	AF179369|Htra1|56213|HtrA serine peptidase 1	AF172994|Htra1|56213|HtrA serine peptidase 1	BC013516|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr8_-_23296255_23296290	7.24558	SOX{8,9,10}.p2	AK132463|Ckap2|80986|cytoskeleton associated protein 2	BC145666|Ckap2|80986|cytoskeleton associated protein 2	BC146023|Ckap2|80986|cytoskeleton associated protein 2	AY692438|Ckap2|80986|cytoskeleton associated protein 2	NM_001004140|Ckap2|80986|cytoskeleton associated protein 2
mm9_v1_chr18_+_82723920_82724127	7.14732	SOX{8,9,10}.p2	AK005129|Mbp|17196|myelin basic protein	M15060|Mbp|17196|myelin basic protein	BC004704|Mbp|17196|myelin basic protein	DQ887821|Mbp|17196|myelin basic protein	M15062|Mbp|17196|myelin basic protein	AK189263|Mbp|17196|myelin basic protein	AK190490|Mbp|17196|myelin basic protein	AK191010|Mbp|17196|myelin basic protein	AK195158|Mbp|17196|myelin basic protein	AK197274|Mbp|17196|myelin basic protein	AK199946|Mbp|17196|myelin basic protein
mm9_v1_chr18_+_37921454_37921532	7.14407	SOX{8,9,10}.p2	BC139099|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	BC139100|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	NM_033580|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	AY013810|Pcdhgb8|93705|protocadherin gamma subfamily B, 8
mm9_v1_chr2_+_72244049_72244137	7.13621	SOX{8,9,10}.p2	AK137519|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene
mm9_v1_chr13_-_60278447_60278547	7.10514	SOX{8,9,10}.p2	BC055747|Gas1|14451|growth arrest specific 1
mm9_v1_chr18_+_82723854_82723899	7.06808	SOX{8,9,10}.p2	NM_001025251|Mbp|17196|myelin basic protein	NM_001025255|Mbp|17196|myelin basic protein	NM_001025256|Mbp|17196|myelin basic protein	NM_001025258|Mbp|17196|myelin basic protein	NM_001025259|Mbp|17196|myelin basic protein	AK079621|Mbp|17196|myelin basic protein	NM_001025254|Mbp|17196|myelin basic protein
mm9_v1_chr17_+_44090222_44090252	7.06484	SOX{8,9,10}.p2	AK160865|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr9_+_70526985_70526997	7.04598	SOX{8,9,10}.p2	AF011379|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr11_+_29593657_29593773	7.04249	SOX{8,9,10}.p2	AK211699|Rtn4|68585|reticulon 4	AK218123|Rtn4|68585|reticulon 4	AY102280|Rtn4|68585|reticulon 4	NM_194051|Rtn4|68585|reticulon 4
mm9_v1_chr5_+_75552144_75552190	7.03649	SOX{8,9,10}.p2	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr13_-_21845695_21845780	7.00971	SOX{8,9,10}.p2	NM_178183|Hist1h2ak|319169|histone cluster 1, H2ak	BC119335|Hist1h2ak|319169|histone cluster 1, H2ak
mm9_v1_chr10_+_85763156_85763226	6.96522	SOX{8,9,10}.p2	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr18_+_37849488_37849707	6.95332	SOX{8,9,10}.p2	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr18_+_82723907_82723917	6.95049	SOX{8,9,10}.p2	AK147966|Mbp|17196|myelin basic protein
mm9_v1_chr3_-_145312928_145312948	6.93286	SOX{8,9,10}.p2	BC066019|Cyr61|16007|cysteine rich protein 61	BC003205|Cyr61|16007|cysteine rich protein 61	AK156723|Cyr61|16007|cysteine rich protein 61	AK159452|Cyr61|16007|cysteine rich protein 61	M32490|Cyr61|16007|cysteine rich protein 61	NM_010516|Cyr61|16007|cysteine rich protein 61
mm9_v1_chr3_-_36470882_36470894	6.92253	SOX{8,9,10}.p2	AK135861|Ccna2|12428|cyclin A2
mm9_v1_chr6_+_83087016_83087103	6.89813	SOX{8,9,10}.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr3_-_36470845_36470865	6.87774	SOX{8,9,10}.p2	X75483|Ccna2|12428|cyclin A2	Z26580|Ccna2|12428|cyclin A2	BC052730|Ccna2|12428|cyclin A2
mm9_v1_chr18_-_16967100_16967238	6.84364	SOX{8,9,10}.p2	AB008811|Cdh2|12558|cadherin 2	M31131|Cdh2|12558|cadherin 2
mm9_v1_chr17_+_44090341_44090399	6.84136	SOX{8,9,10}.p2	BC047153|Rcan2|53901|regulator of calcineurin 2	AF237887|Rcan2|53901|regulator of calcineurin 2	AF237791|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr8_+_11312828_11312937	6.81678	SOX{8,9,10}.p2	AK053858|Col4a2|12827|collagen, type IV, alpha 2	NM_009932|Col4a2|12827|collagen, type IV, alpha 2	AK164096|Col4a2|12827|collagen, type IV, alpha 2	BC080789|Col4a2|12827|collagen, type IV, alpha 2	BC107685|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr15_-_98783909_98783984	6.8073	SOX{8,9,10}.p2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr12_+_41172639_41172648	6.79833	SOX{8,9,10}.p2	AK043666|Dock4|238130|dedicator of cytokinesis 4	NM_172803|Dock4|238130|dedicator of cytokinesis 4
mm9_v1_chr14_-_71018208_71018377	6.79347	SOX{8,9,10}.p2	AF079846|Epb4.9|13829|erythrocyte protein band 4.9	AF155547|Epb4.9|13829|erythrocyte protein band 4.9	BC037021|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr12_-_81744771_81744855	6.75204	SOX{8,9,10}.p2	BC107315|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC107316|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132421|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132423|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U66870|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC099476|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U01140|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC083141|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK171834|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK010451|Erh|13877|enhancer of rudimentary homolog (Drosophila)	D73368|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK168188|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK080617|Erh|13877|enhancer of rudimentary homolog (Drosophila)	NM_007951|Erh|13877|enhancer of rudimentary homolog (Drosophila)
mm9_v1_chr7_-_31230463_31230562	6.74315	SOX{8,9,10}.p2	BC106158|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK170818|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK160871|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK154992|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr16_+_23146631_23146693	6.73827	SOX{8,9,10}.p2	AK041214|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AX767957|Adipoq|11450|adiponectin, C1Q and collagen domain containing	U37222|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AK003138|Adipoq|11450|adiponectin, C1Q and collagen domain containing	BC028770|Adipoq|11450|adiponectin, C1Q and collagen domain containing
mm9_v1_chr13_+_113254277_113254381	6.66925	SOX{8,9,10}.p2	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr11_+_59475986_59476013	6.64466	SOX{8,9,10}.p2	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr8_-_87323958_87324038	6.57108	SOX{8,9,10}.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr17_+_87506971_87507037	6.47618	SOX{8,9,10}.p2	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr12_+_31950252_31950264	6.44347	SOX{8,9,10}.p2	M15525|Lamb1|16777|laminin B1	BC121790|Lamb1|16777|laminin B1
mm9_v1_chr18_+_37890662_37890807	6.43895	SOX{8,9,10}.p2	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr13_-_60278558_60278627	6.405	SOX{8,9,10}.p2	BC058628|Gas1|14451|growth arrest specific 1
mm9_v1_chr8_+_120807674_120807696	6.3591	SOX{8,9,10}.p2	AK034995|Cdh13|12554|cadherin 13	AK085939|Cdh13|12554|cadherin 13	AK029195|Cdh13|12554|cadherin 13	AK134649|Cdh13|12554|cadherin 13
mm9_v1_chr18_+_37880036_37880207	6.32042	SOX{8,9,10}.p2	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr14_+_21748602_21748628	6.31258	SOX{8,9,10}.p2	AK077850|Vcl|22330|vinculin	AK135530|Vcl|22330|vinculin
mm9_v1_chr7_-_20300595_20300626	6.30822	SOX{8,9,10}.p2	AF043249|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AF316403|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AF316404|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm9_v1_chr8_-_11312729_11312825	6.24199	SOX{8,9,10}.p2	J04694|Col4a1|12826|collagen, type IV, alpha 1	AK142097|Col4a1|12826|collagen, type IV, alpha 1	J03758|Col4a1|12826|collagen, type IV, alpha 1	AK147284|Col4a1|12826|collagen, type IV, alpha 1	AK147355|Col4a1|12826|collagen, type IV, alpha 1	X06777|Col4a1|12826|collagen, type IV, alpha 1	AK146487|Col4a1|12826|collagen, type IV, alpha 1	AK159130|Col4a1|12826|collagen, type IV, alpha 1	AK147661|Col4a1|12826|collagen, type IV, alpha 1	NM_009931|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr8_+_120807621_120807654	6.22042	SOX{8,9,10}.p2	AK032409|Cdh13|12554|cadherin 13	AK039438|Cdh13|12554|cadherin 13	AB022100|Cdh13|12554|cadherin 13	BC021628|Cdh13|12554|cadherin 13	AK045201|Cdh13|12554|cadherin 13	AK048724|Cdh13|12554|cadherin 13	NM_019707|Cdh13|12554|cadherin 13
mm9_v1_chr9_-_70269246_70269297	6.21472	SOX{8,9,10}.p2	CT010286|Ccnb2|12442|cyclin B2	BC008247|Ccnb2|12442|cyclin B2
mm9_v1_chr2_+_158593806_158593834	6.21147	SOX{8,9,10}.p2	AK159308|Fam83d|71878|family with sequence similarity 83, member D	AK009199|Fam83d|71878|family with sequence similarity 83, member D	AK156048|Fam83d|71878|family with sequence similarity 83, member D	BC068129|Fam83d|71878|family with sequence similarity 83, member D	NM_027975|Fam83d|71878|family with sequence similarity 83, member D
mm9_v1_chr7_-_128125714_128125825	6.18115	SOX{8,9,10}.p2	BC117530|Cdr2|12585|cerebellar degeneration-related 2	BC118511|Cdr2|12585|cerebellar degeneration-related 2	AK171706|Cdr2|12585|cerebellar degeneration-related 2	U88588|Cdr2|12585|cerebellar degeneration-related 2	AK157902|Cdr2|12585|cerebellar degeneration-related 2	AK148057|Cdr2|12585|cerebellar degeneration-related 2	NM_007672|Cdr2|12585|cerebellar degeneration-related 2
mm9_v1_chr5_+_111846284_111846381	6.16662	SOX{8,9,10}.p2	AK142207|Mn1|433938|meningioma 1
mm9_v1_chr3_-_89222140_89222253	6.16569	SOX{8,9,10}.p2	AK011782|Cks1b|54124|CDC28 protein kinase 1b	AK004101|Cks1b|54124|CDC28 protein kinase 1b	AK011314|Cks1b|54124|CDC28 protein kinase 1b	AK010414|Cks1b|54124|CDC28 protein kinase 1b	BC076579|Cks1b|54124|CDC28 protein kinase 1b	AB025409|Cks1b|54124|CDC28 protein kinase 1b	NM_016904|Cks1b|54124|CDC28 protein kinase 1b
mm9_v1_chr1_-_94076857_94076917	6.16535	SOX{8,9,10}.p2	AK155250|Hdac4|208727|histone deacetylase 4
mm9_v1_chr14_+_63754443_63754544	6.16212	SOX{8,9,10}.p2	Y18463|Ctsb|13030|cathepsin B
mm9_v1_chr1_-_156993820_156993943	6.15179	SOX{8,9,10}.p2	AF010448|Mr1|15064|major histocompatibility complex, class I-related	AF010449|Mr1|15064|major histocompatibility complex, class I-related	AF010450|Mr1|15064|major histocompatibility complex, class I-related	AF010452|Mr1|15064|major histocompatibility complex, class I-related	AF010453|Mr1|15064|major histocompatibility complex, class I-related	U94989|Mr1|15064|major histocompatibility complex, class I-related	AK162712|Mr1|15064|major histocompatibility complex, class I-related	NM_008209|Mr1|15064|major histocompatibility complex, class I-related	BC026137|Mr1|15064|major histocompatibility complex, class I-related	AK042119|Mr1|15064|major histocompatibility complex, class I-related	AK137171|Mr1|15064|major histocompatibility complex, class I-related	AK144040|Mr1|15064|major histocompatibility complex, class I-related	AK041171|Mr1|15064|major histocompatibility complex, class I-related
mm9_v1_chr3_-_36470904_36470919	6.09725	SOX{8,9,10}.p2	NM_009828|Ccna2|12428|cyclin A2	AK044924|Ccna2|12428|cyclin A2
mm9_v1_chr7_+_119167034_119167043	5.93766	SOX{8,9,10}.p2	AK041541|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr7_-_89079168_89079313	5.91978	SOX{8,9,10}.p2	AK014849|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK044858|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK051401|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK135495|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr14_+_121434765_121434823	5.91697	SOX{8,9,10}.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr3_-_151873041_151873083	5.81304	SOX{8,9,10}.p2	AK006478|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4
mm9_v1_chr2_+_26171051_26171062	5.78543	SOX{8,9,10}.p2	AK048691|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)	NM_153410|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm9_v1_chr15_-_43002356_43002397	5.75205	SOX{8,9,10}.p2	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr8_+_55635683_55635717	5.73894	SOX{8,9,10}.p2	AK003770|Asb5|76294|ankyrin repeat and SOCs box-containing 5	NM_029569|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC120851|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC132007|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr1_+_12708582_12708625	5.64928	SOX{8,9,10}.p2	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr4_-_134828699_134828733	5.63474	SOX{8,9,10}.p2	AK170942|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr11_+_115243203_115243359	5.57522	SOX{8,9,10}.p2	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr12_-_103677867_103678043	5.56848	SOX{8,9,10}.p2	AF044266|Lgmn|19141|legumain	AJ000990|Lgmn|19141|legumain	NM_011175|Lgmn|19141|legumain	AK149666|Lgmn|19141|legumain
mm9_v1_chr4_+_48598013_48598089	5.55814	SOX{8,9,10}.p2	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr2_+_26171073_26171116	5.55139	SOX{8,9,10}.p2	AK082985|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)	AK084631|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm9_v1_chr13_-_34222209_34222227	5.54911	SOX{8,9,10}.p2	BC138935|Tubb2b|73710|tubulin, beta 2B	BC138936|Tubb2b|73710|tubulin, beta 2B	AK168908|Tubb2b|73710|tubulin, beta 2B	AK010786|Tubb2b|73710|tubulin, beta 2B	NM_023716|Tubb2b|73710|tubulin, beta 2B
mm9_v1_chr12_+_96930429_96930467	5.52393	SOX{8,9,10}.p2	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr1_-_173126368_173126402	5.48468	SOX{8,9,10}.p2	AK032164|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK075738|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK002772|Pcp4l1|66425|Purkinje cell protein 4-like 1	AY304481|Pcp4l1|66425|Purkinje cell protein 4-like 1	NM_025557|Pcp4l1|66425|Purkinje cell protein 4-like 1
mm9_v1_chr5_+_37633353_37633487	5.41958	SOX{8,9,10}.p2	AK158793|Crmp1|12933|collapsin response mediator protein 1	AK159049|Crmp1|12933|collapsin response mediator protein 1
mm9_v1_chr3_+_121670737_121670783	5.36214	SOX{8,9,10}.p2	AK044979|Arhgap29|214137|Rho GTPase activating protein 29	AK043637|Arhgap29|214137|Rho GTPase activating protein 29	BC052858|Arhgap29|214137|Rho GTPase activating protein 29
mm9_v1_chr11_-_6344445_6344467	5.34299	SOX{8,9,10}.p2	NM_029938|H2afv|77605|H2A histone family, member V	AK155105|H2afv|77605|H2A histone family, member V
mm9_v1_chr4_+_129190872_129190875	5.29369	SOX{8,9,10}.p2	AK083913|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr2_+_156246644_156246847	5.29141	SOX{8,9,10}.p2	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr8_+_26629214_26629332	5.2704	SOX{8,9,10}.p2	NM_001079908|Fgfr1|14182|fibroblast growth factor receptor 1	NM_001079909|Fgfr1|14182|fibroblast growth factor receptor 1	NM_010206|Fgfr1|14182|fibroblast growth factor receptor 1	AK049704|Fgfr1|14182|fibroblast growth factor receptor 1	S74765|Fgfr1|14182|fibroblast growth factor receptor 1	BC010200|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr2_-_73418334_73418394	5.26677	SOX{8,9,10}.p2	AK132589|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	X03986|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	AK029177|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	NM_007389|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC125439|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC137678|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm9_v1_chr14_+_55050530_55050726	5.264	SOX{8,9,10}.p2	X83536|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149988|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	DQ249870|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK198018|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr4_+_13670582_13670631	5.21815	SOX{8,9,10}.p2	AK032132|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr6_-_54543167_54543172	5.19708	SOX{8,9,10}.p2	AK030620|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr13_+_113657736_113657889	5.17609	SOX{8,9,10}.p2	
mm9_v1_chr17_+_44090192_44090211	5.17265	SOX{8,9,10}.p2	AB061524|Rcan2|53901|regulator of calcineurin 2	AK049006|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr3_-_95032039_95032230	5.13477	SOX{8,9,10}.p2	BC022963|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	AK046005|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	U95498|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	AB000733|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	AK158495|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm9_v1_chr3_-_57651409_57651501	5.1303	SOX{8,9,10}.p2	AJ272203|Pfn2|18645|profilin 2	BC024363|Pfn2|18645|profilin 2	AK132651|Pfn2|18645|profilin 2
mm9_v1_chr9_-_29219306_29219337	5.10398	SOX{8,9,10}.p2	AF282980|Ntm|235106|neurotrimin	BC023307|Ntm|235106|neurotrimin
mm9_v1_chr10_-_61246611_61246701	5.09015	SOX{8,9,10}.p2	AF336305|H2afy2|404634|H2A histone family, member Y2	NM_207000|H2afy2|404634|H2A histone family, member Y2	BC045140|H2afy2|404634|H2A histone family, member Y2	AK165020|H2afy2|404634|H2A histone family, member Y2	AK018355|H2afy2|404634|H2A histone family, member Y2	BC046794|H2afy2|404634|H2A histone family, member Y2	AK078464|H2afy2|404634|H2A histone family, member Y2	AK032636|H2afy2|404634|H2A histone family, member Y2	AK020744|H2afy2|404634|H2A histone family, member Y2
mm9_v1_chr2_-_181049204_181049204	5.08945	SOX{8,9,10}.p2	AK032737|Stmn3|20262|stathmin-like 3	NM_009133|Stmn3|20262|stathmin-like 3
mm9_v1_chr8_+_108939247_108939300	5.06892	SOX{8,9,10}.p2	BC046230|Zfp90|22751|zinc finger protein 90	AK147423|Zfp90|22751|zinc finger protein 90	BC046298|Zfp90|22751|zinc finger protein 90	AK050519|Zfp90|22751|zinc finger protein 90	X79828|Zfp90|22751|zinc finger protein 90
mm9_v1_chr15_-_76853069_76853216	5.05236	SOX{8,9,10}.p2	AK137456|Mb|17189|myoglobin	NM_001164048|Mb|17189|myoglobin	NM_001164047|Mb|17189|myoglobin
mm9_v1_chr6_+_22825464_22825502	5.03606	SOX{8,9,10}.p2	AK081698|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1	NM_001081306|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm9_v1_chr8_-_48373564_48373676	5.02739	SOX{8,9,10}.p2	BC099949|Stox2|71069|storkhead box 2
mm9_v1_chrX_+_155897136_155897153	5.01269	SOX{8,9,10}.p2	AK005554|Mtap7d2|78283|MAP7 domain containing 2	AK030316|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr10_+_125403274_125403331	5.00713	SOX{8,9,10}.p2	AK035166|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	NM_177152|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AK137007|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	BC065142|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AY505341|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3
mm9_v1_chr12_-_73337534_73337705	4.99503	SOX{8,9,10}.p2	AK013731|Rtn1|104001|reticulon 1	AK014358|Rtn1|104001|reticulon 1
mm9_v1_chr10_-_75395207_75395224	4.97998	SOX{8,9,10}.p2	NM_008606|Mmp11|17385|matrix metallopeptidase 11	Z12604|Mmp11|17385|matrix metallopeptidase 11	BC052854|Mmp11|17385|matrix metallopeptidase 11	AK142169|Mmp11|17385|matrix metallopeptidase 11	AK165778|Mmp11|17385|matrix metallopeptidase 11
mm9_v1_chr8_+_55635768_55635781	4.94732	SOX{8,9,10}.p2	BC108405|Asb5|76294|ankyrin repeat and SOCs box-containing 5	AF398966|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr19_-_44470218_44470225	4.91827	SOX{8,9,10}.p2	AK163960|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr19_-_42160732_42160861	4.9141	SOX{8,9,10}.p2	AK180979|Morn4|226123|MORN repeat containing 4	AK214121|Morn4|226123|MORN repeat containing 4	BC023055|Morn4|226123|MORN repeat containing 4	AK159230|Morn4|226123|MORN repeat containing 4	AK154147|Morn4|226123|MORN repeat containing 4	NM_198108|Morn4|226123|MORN repeat containing 4
mm9_v1_chr2_+_31951030_31951062	4.91277	SOX{8,9,10}.p2	AK134638|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chrX_+_104115963_104116162	4.87972	SOX{8,9,10}.p2	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr4_-_125933482_125933589	4.8752	SOX{8,9,10}.p2	BC023677|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	BC023774|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	AK151613|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_001145970|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_144941|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1
mm9_v1_chr6_-_54543121_54543160	4.87433	SOX{8,9,10}.p2	BC029109|Fkbp14|231997|FK506 binding protein 14	NM_153573|Fkbp14|231997|FK506 binding protein 14	BC034313|Fkbp14|231997|FK506 binding protein 14	AK081692|Fkbp14|231997|FK506 binding protein 14	AK044876|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr3_-_88905775_88905882	4.8701	SOX{8,9,10}.p2	AF309508|Fdps|110196|farnesyl diphosphate synthetase	AK168008|Fdps|110196|farnesyl diphosphate synthetase	AK088601|Fdps|110196|farnesyl diphosphate synthetase	AK166026|Fdps|110196|farnesyl diphosphate synthetase	BC087886|Fdps|110196|farnesyl diphosphate synthetase	AK077979|Fdps|110196|farnesyl diphosphate synthetase	AK151742|Fdps|110196|farnesyl diphosphate synthetase	BC048497|Fdps|110196|farnesyl diphosphate synthetase	NM_134469|Fdps|110196|farnesyl diphosphate synthetase	AK140881|Fdps|110196|farnesyl diphosphate synthetase
mm9_v1_chr11_+_66984528_66984720	4.84238	SOX{8,9,10}.p2	DQ020160|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	NM_001039545|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AK036437|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AY963799|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020161|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020162|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	BC008538|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult
mm9_v1_chr5_+_37633317_37633321	4.83341	SOX{8,9,10}.p2	BC065046|Crmp1|12933|collapsin response mediator protein 1	NM_001136058|Crmp1|12933|collapsin response mediator protein 1
mm9_v1_chr11_-_100259048_100259060	4.80174	SOX{8,9,10}.p2	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr2_+_31951149_31951239	4.79277	SOX{8,9,10}.p2	AK052883|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	NM_145521|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	BC016136|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr9_+_78463352_78463357	4.79265	SOX{8,9,10}.p2	AY083458|Cd109|235505|CD109 antigen	DQ832284|Cd109|235505|CD109 antigen	NM_153098|Cd109|235505|CD109 antigen
mm9_v1_chr1_-_77511653_77511664	4.79192	SOX{8,9,10}.p2	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr1_+_72871060_72871146	4.77995	SOX{8,9,10}.p2	AK012703|Igfbp2|16008|insulin-like growth factor binding protein 2	BC012724|Igfbp2|16008|insulin-like growth factor binding protein 2	NM_008342|Igfbp2|16008|insulin-like growth factor binding protein 2	BC054473|Igfbp2|16008|insulin-like growth factor binding protein 2	X81580|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011784|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011790|Igfbp2|16008|insulin-like growth factor binding protein 2
mm9_v1_chr6_-_124761078_124761358	4.77358	SOX{8,9,10}.p2	AK216486|Tpi1|21991|triosephosphate isomerase 1	AK201708|Tpi1|21991|triosephosphate isomerase 1	AK191907|Tpi1|21991|triosephosphate isomerase 1	AK191323|Tpi1|21991|triosephosphate isomerase 1	AK190112|Tpi1|21991|triosephosphate isomerase 1	AK204501|Tpi1|21991|triosephosphate isomerase 1
mm9_v1_chr9_-_29219382_29219527	4.74811	SOX{8,9,10}.p2	AK158752|Ntm|235106|neurotrimin
mm9_v1_chr4_+_17780628_17780643	4.74589	SOX{8,9,10}.p2	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr18_+_37644390_37644448	4.70616	SOX{8,9,10}.p2	AK122533|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr18_+_37906668_37906697	4.6949	SOX{8,9,10}.p2	BC035540|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr3_+_101180976_101181070	4.69177	SOX{8,9,10}.p2	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr10_+_61245998_61246044	4.66305	SOX{8,9,10}.p2	
mm9_v1_chr9_+_120058842_120058868	4.66279	SOX{8,9,10}.p2	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr1_+_17135421_17135611	4.636	SOX{8,9,10}.p2	AK149281|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	AK083814|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	NM_010267|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	AK045460|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	Y17850|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	AK020988|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	BC048177|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	BC060212|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	AK049655|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	BC051135|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1	AK139057|Gdap1|14545|ganglioside-induced differentiation-associated-protein 1
mm9_v1_chr7_-_20300724_20300809	4.60827	SOX{8,9,10}.p2	AK170991|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK163759|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK164570|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	BC100452|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK165173|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK150019|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK164222|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	NM_001109748|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	NM_016871|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm9_v1_chrX_+_162782484_162782852	4.57675	SOX{8,9,10}.p2	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr6_-_83781657_83781701	4.56413	SOX{8,9,10}.p2	BC017133|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC034096|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC039969|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK173114|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK168804|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK045922|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr11_+_59476129_59476146	4.54908	SOX{8,9,10}.p2	U73200|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr12_+_25393083_25393272	4.54253	SOX{8,9,10}.p2	BC085136|Rrm2|20135|ribonucleotide reductase M2	NM_009104|Rrm2|20135|ribonucleotide reductase M2	AK142027|Rrm2|20135|ribonucleotide reductase M2	AK161643|Rrm2|20135|ribonucleotide reductase M2	AK167204|Rrm2|20135|ribonucleotide reductase M2	AK168117|Rrm2|20135|ribonucleotide reductase M2	AK168994|Rrm2|20135|ribonucleotide reductase M2	AK168205|Rrm2|20135|ribonucleotide reductase M2	M14223|Rrm2|20135|ribonucleotide reductase M2	AK088907|Rrm2|20135|ribonucleotide reductase M2	AK167078|Rrm2|20135|ribonucleotide reductase M2	AK147111|Rrm2|20135|ribonucleotide reductase M2	AK188716|Rrm2|20135|ribonucleotide reductase M2	AK189805|Rrm2|20135|ribonucleotide reductase M2
mm9_v1_chr4_+_129190877_129190896	4.53213	SOX{8,9,10}.p2	AK079390|Marcksl1|17357|MARCKS-like 1	AK150261|Marcksl1|17357|MARCKS-like 1	AK152990|Marcksl1|17357|MARCKS-like 1	AK169355|Marcksl1|17357|MARCKS-like 1	X61399|Marcksl1|17357|MARCKS-like 1	BC006757|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr8_+_23868194_23868239	4.48668	SOX{8,9,10}.p2	AK053476|Plat|18791|plasminogen activator, tissue	NM_008872|Plat|18791|plasminogen activator, tissue	BC011256|Plat|18791|plasminogen activator, tissue	AK135857|Plat|18791|plasminogen activator, tissue	AK135965|Plat|18791|plasminogen activator, tissue	AK141665|Plat|18791|plasminogen activator, tissue	AK159620|Plat|18791|plasminogen activator, tissue	AK166639|Plat|18791|plasminogen activator, tissue	BC061508|Plat|18791|plasminogen activator, tissue	BC057967|Plat|18791|plasminogen activator, tissue	J03520|Plat|18791|plasminogen activator, tissue
mm9_v1_chr13_-_22127419_22127511	4.48261	SOX{8,9,10}.p2	BC125248|Hist1h2ah|319168|histone cluster 1, H2ah	NM_175659|Hist1h2ah|319168|histone cluster 1, H2ah	BC139479|Hist1h2ah|319168|histone cluster 1, H2ah	BC146008|Hist1h2ah|319168|histone cluster 1, H2ah
mm9_v1_chr9_+_65738150_65738159	4.44545	SOX{8,9,10}.p2	AK012140|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr11_-_100259061_100259098	4.39396	SOX{8,9,10}.p2	AK170934|Jup|16480|junction plakoglobin	AK171501|Jup|16480|junction plakoglobin	AK145895|Jup|16480|junction plakoglobin
mm9_v1_chr1_-_16509276_16509454	4.39364	SOX{8,9,10}.p2	AK031102|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459099|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459100|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AK171076|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_001111272|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_025303|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)
mm9_v1_chr3_+_89222501_89222609	4.34779	SOX{8,9,10}.p2	AK049357|Shc1|20416|src homology 2 domain-containing transforming protein C1	BC036172|Shc1|20416|src homology 2 domain-containing transforming protein C1	U15784|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr1_-_77511577_77511645	4.34484	SOX{8,9,10}.p2	BC004782|Epha4|13838|Eph receptor A4	BC052164|Epha4|13838|Eph receptor A4
mm9_v1_chr7_-_89079335_89079355	4.34247	SOX{8,9,10}.p2	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr13_-_55589377_55589460	4.32016	SOX{8,9,10}.p2	AK132060|Dbn1|56320|drebrin 1	AK162697|Dbn1|56320|drebrin 1	AB064321|Dbn1|56320|drebrin 1	AF187147|Dbn1|56320|drebrin 1	AF187148|Dbn1|56320|drebrin 1	NM_001177371|Dbn1|56320|drebrin 1	NM_001177372|Dbn1|56320|drebrin 1	NM_019813|Dbn1|56320|drebrin 1
mm9_v1_chr3_+_99057679_99057682	4.30212	SOX{8,9,10}.p2	AK132578|Tbx15|21384|T-box 15	NM_009323|Tbx15|21384|T-box 15
mm9_v1_chr9_-_60535699_60535786	4.24285	SOX{8,9,10}.p2	BC016574|Lrrc49|102747|leucine rich repeat containing 49	AK041627|Lrrc49|102747|leucine rich repeat containing 49	AK049268|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr2_+_32480924_32481016	4.21598	SOX{8,9,10}.p2	AK089270|Ak1|11636|adenylate kinase 1	NM_001198791|Ak1|11636|adenylate kinase 1	BC014802|Ak1|11636|adenylate kinase 1
mm9_v1_chr2_-_166774855_166774859	4.21007	SOX{8,9,10}.p2	AK177619|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK189331|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)
mm9_v1_chr13_-_22134795_22134831	4.20984	SOX{8,9,10}.p2	BC116373|Hist1h2ai|319191|histone cluster 1, H2ai	BC065803|Hist1h2ag|319167|histone cluster 1, H2ag	NM_178186|Hist1h2ag|319167|histone cluster 1, H2ag
mm9_v1_chr5_+_114894288_114894354	4.20946	SOX{8,9,10}.p2	AK009261|Mvk|17855|mevalonate kinase	AK031084|Mvk|17855|mevalonate kinase	AK149630|Mvk|17855|mevalonate kinase	BC005606|Mvk|17855|mevalonate kinase	NM_023556|Mvk|17855|mevalonate kinase
mm9_v1_chr3_+_89019108_89019113	4.20235	SOX{8,9,10}.p2	NM_013691|Thbs3|21827|thrombospondin 3
mm9_v1_chr5_+_36235967_36236084	4.19452	SOX{8,9,10}.p2	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr15_+_78744328_78744471	4.18008	SOX{8,9,10}.p2	BC049107|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	NM_020271|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AY366300|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AK043228|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	BC046955|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AB041662|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr11_+_3230733_3230843	4.16535	SOX{8,9,10}.p2	NM_178149|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK028419|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK029304|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK154842|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK005141|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK160300|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528081|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC055920|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC079641|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528078|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC028479|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1
mm9_v1_chr2_+_177876858_177876930	4.16261	SOX{8,9,10}.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr1_-_170085342_170085390	4.15636	SOX{8,9,10}.p2	AK083616|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr11_+_86922732_86922770	4.10931	SOX{8,9,10}.p2	BC117001|Fam33a|66140|family with sequence similarity 33, member A	BC119167|Fam33a|66140|family with sequence similarity 33, member A	AK003196|Fam33a|66140|family with sequence similarity 33, member A	AK153219|Fam33a|66140|family with sequence similarity 33, member A	BC060088|Fam33a|66140|family with sequence similarity 33, member A	BC052151|Fam33a|66140|family with sequence similarity 33, member A	BC096627|Fam33a|66140|family with sequence similarity 33, member A	AK013317|Fam33a|66140|family with sequence similarity 33, member A	AK013370|Fam33a|66140|family with sequence similarity 33, member A	AK017811|Fam33a|66140|family with sequence similarity 33, member A	NM_025377|Fam33a|66140|family with sequence similarity 33, member A	AK162628|Fam33a|66140|family with sequence similarity 33, member A
mm9_v1_chr6_-_83781704_83781750	4.10173	SOX{8,9,10}.p2	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr4_+_129190824_129190856	4.10078	SOX{8,9,10}.p2	NM_010807|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr8_-_96560811_96560953	4.09301	SOX{8,9,10}.p2	AK204985|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC090834|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK146419|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK160147|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK012308|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK020150|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK019433|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK147061|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC008270|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK011688|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	NM_026623|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21
mm9_v1_chr5_+_111847185_111847185	4.08231	SOX{8,9,10}.p2	NM_001081235|Mn1|433938|meningioma 1
mm9_v1_chr17_-_35975148_35975258	4.06521	SOX{8,9,10}.p2	BC003825|Tubb5|22154|tubulin, beta 5	AK076196|Tubb5|22154|tubulin, beta 5	AK148978|Tubb5|22154|tubulin, beta 5	AK167808|Tubb5|22154|tubulin, beta 5	AK168271|Tubb5|22154|tubulin, beta 5	AK169123|Tubb5|22154|tubulin, beta 5	AK011263|Tubb5|22154|tubulin, beta 5	AK165249|Tubb5|22154|tubulin, beta 5	AK169210|Tubb5|22154|tubulin, beta 5	AK010960|Tubb5|22154|tubulin, beta 5	AK011765|Tubb5|22154|tubulin, beta 5	AK012350|Tubb5|22154|tubulin, beta 5	AK017806|Tubb5|22154|tubulin, beta 5	AK051164|Tubb5|22154|tubulin, beta 5	AK051393|Tubb5|22154|tubulin, beta 5	AK083327|Tubb5|22154|tubulin, beta 5	AK146567|Tubb5|22154|tubulin, beta 5	AK151215|Tubb5|22154|tubulin, beta 5	AK151670|Tubb5|22154|tubulin, beta 5	AK160225|Tubb5|22154|tubulin, beta 5	AK161575|Tubb5|22154|tubulin, beta 5	AK167691|Tubb5|22154|tubulin, beta 5	AK167779|Tubb5|22154|tubulin, beta 5	AK167926|Tubb5|22154|tubulin, beta 5	AK169295|Tubb5|22154|tubulin, beta 5	AK169606|Tubb5|22154|tubulin, beta 5	NM_011655|Tubb5|22154|tubulin, beta 5
mm9_v1_chr13_-_55589463_55589528	4.06121	SOX{8,9,10}.p2	BC006714|Dbn1|56320|drebrin 1
mm9_v1_chr11_+_67051530_67051557	4.05489	SOX{8,9,10}.p2	NM_010855|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066419|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ233297|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chrX_-_9694712_9694834	4.04527	SOX{8,9,10}.p2	AB028049|Srpx|51795|sushi-repeat-containing protein	AB028050|Srpx|51795|sushi-repeat-containing protein	BC022572|Srpx|51795|sushi-repeat-containing protein	AK034696|Srpx|51795|sushi-repeat-containing protein	NM_016911|Srpx|51795|sushi-repeat-containing protein	BC027630|Srpx|51795|sushi-repeat-containing protein	AK159662|Srpx|51795|sushi-repeat-containing protein
mm9_v1_chr5_+_23870625_23870649	4.03219	SOX{8,9,10}.p2	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr3_-_151873242_151873265	4.0017	SOX{8,9,10}.p2	NM_027287|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4	AK077587|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4
mm9_v1_chr10_-_62041134_62041209	4.0004	SOX{8,9,10}.p2	AK149629|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK003009|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK158730|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC055307|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC090974|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC046485|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK161007|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK129320|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK035659|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK141324|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	NM_028197|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene
mm9_v1_chr2_-_73613381_73613446	3.98964	SOX{8,9,10}.p2	NM_001113246|Chn1|108699|chimerin (chimaerin) 1	NM_001166603|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr8_+_74659107_74659219	3.98879	SOX{8,9,10}.p2	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr16_+_23146608_23146621	3.98698	SOX{8,9,10}.p2	AK134112|Adipoq|11450|adiponectin, C1Q and collagen domain containing	NM_009605|Adipoq|11450|adiponectin, C1Q and collagen domain containing
mm9_v1_chr10_+_97110043_97110069	3.96556	SOX{8,9,10}.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr4_-_91066674_91066674	3.95275	SOX{8,9,10}.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr6_+_30351871_30351895	3.94708	SOX{8,9,10}.p2	AK085116|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr4_-_63681749_63681759	3.92713	SOX{8,9,10}.p2	BC117979|Tnc|21923|tenascin C	BC117980|Tnc|21923|tenascin C	NM_011607|Tnc|21923|tenascin C	X56304|Tnc|21923|tenascin C
mm9_v1_chr15_+_25552273_25552341	3.91088	SOX{8,9,10}.p2	AK028552|Myo10|17909|myosin X	AK089482|Myo10|17909|myosin X	NM_019472|Myo10|17909|myosin X
mm9_v1_chr10_+_96942181_96942256	3.90637	SOX{8,9,10}.p2	X53929|Dcn|13179|decorin	AK135287|Dcn|13179|decorin	AK145905|Dcn|13179|decorin	AK161788|Dcn|13179|decorin	AK165408|Dcn|13179|decorin
mm9_v1_chr18_+_37157533_37157533	3.90507	SOX{8,9,10}.p2	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr9_-_75257067_75257210	3.89944	SOX{8,9,10}.p2	NM_027418|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chrX_+_102318792_102318798	3.8989	SOX{8,9,10}.p2	AK209904|Magee1|107528|melanoma antigen, family E, 1
mm9_v1_chr7_-_52241669_52241769	3.89728	SOX{8,9,10}.p2	BC051547|Prmt1|15469|protein arginine N-methyltransferase 1	BC002249|Prmt1|15469|protein arginine N-methyltransferase 1	AK182363|Prmt1|15469|protein arginine N-methyltransferase 1	AF232716|Prmt1|15469|protein arginine N-methyltransferase 1	AF232717|Prmt1|15469|protein arginine N-methyltransferase 1	AK088790|Prmt1|15469|protein arginine N-methyltransferase 1	NM_019830|Prmt1|15469|protein arginine N-methyltransferase 1	AK020120|Prmt1|15469|protein arginine N-methyltransferase 1	AK146927|Prmt1|15469|protein arginine N-methyltransferase 1	AK164421|Prmt1|15469|protein arginine N-methyltransferase 1	AK146975|Prmt1|15469|protein arginine N-methyltransferase 1	BC051953|Prmt1|15469|protein arginine N-methyltransferase 1	BC062964|Prmt1|15469|protein arginine N-methyltransferase 1	AK152342|Prmt1|15469|protein arginine N-methyltransferase 1
mm9_v1_chr3_+_7366586_7366727	3.87962	SOX{8,9,10}.p2	NM_008862|Pkia|18767|protein kinase inhibitor, alpha	BC048244|Pkia|18767|protein kinase inhibitor, alpha	AK139347|Pkia|18767|protein kinase inhibitor, alpha
mm9_v1_chr6_+_29383152_29383347	3.87558	SOX{8,9,10}.p2	NM_001081185|Flnc|68794|filamin C, gamma	AK051985|Flnc|68794|filamin C, gamma	BC151097|Flnc|68794|filamin C, gamma	BC158128|Flnc|68794|filamin C, gamma	BC172159|Flnc|68794|filamin C, gamma
mm9_v1_chr16_-_45724720_45724763	3.85684	SOX{8,9,10}.p2	AK012333|Tagln3|56370|transgelin 3
mm9_v1_chr11_-_65601774_65601862	3.82802	SOX{8,9,10}.p2	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr2_-_181048957_181049005	3.81028	SOX{8,9,10}.p2	AK002957|Stmn3|20262|stathmin-like 3	AK003203|Stmn3|20262|stathmin-like 3	AF069708|Stmn3|20262|stathmin-like 3	BC057017|Stmn3|20262|stathmin-like 3	AB007912|Stmn3|20262|stathmin-like 3	AK082338|Stmn3|20262|stathmin-like 3
mm9_v1_chr9_-_70269326_70269397	3.80434	SOX{8,9,10}.p2	AK013312|Ccnb2|12442|cyclin B2	X66032|Ccnb2|12442|cyclin B2	AK076122|Ccnb2|12442|cyclin B2	NM_007630|Ccnb2|12442|cyclin B2
mm9_v1_chr15_+_101933364_101933418	3.80388	SOX{8,9,10}.p2	AK147789|Tenc1|209039|tensin like C1 domain-containing phosphatase	AK147941|Tenc1|209039|tensin like C1 domain-containing phosphatase	BC042190|Tenc1|209039|tensin like C1 domain-containing phosphatase	NM_153533|Tenc1|209039|tensin like C1 domain-containing phosphatase
mm9_v1_chr18_+_37133455_37133703	3.76145	SOX{8,9,10}.p2	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr11_+_67051128_67051361	3.75608	SOX{8,9,10}.p2	DQ066415|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066416|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066417|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AK138608|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AY963801|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066418|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chr3_+_28680223_28680237	3.74965	SOX{8,9,10}.p2	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr2_-_84614960_84614971	3.74964	SOX{8,9,10}.p2	BC002026|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1	AK167585|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm9_v1_chr12_+_52792192_52792204	3.74106	SOX{8,9,10}.p2	BC053339|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	AK005283|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1
mm9_v1_chr11_-_100831909_100831946	3.73326	SOX{8,9,10}.p2	BC110698|Ptrf|19285|polymerase I and transcript release factor	AK169463|Ptrf|19285|polymerase I and transcript release factor	NM_008986|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr10_+_17516024_17516131	3.71948	SOX{8,9,10}.p2	AK084639|Txlnb|378431|taxilin beta	NM_138628|Txlnb|378431|taxilin beta	AK084579|Txlnb|378431|taxilin beta	AK052324|Txlnb|378431|taxilin beta	AF422244|Txlnb|378431|taxilin beta	AF422245|Txlnb|378431|taxilin beta	AK137442|Txlnb|378431|taxilin beta	BC141023|Txlnb|378431|taxilin beta	AK085904|Txlnb|378431|taxilin beta
mm9_v1_chr19_+_29175864_29175994	3.71485	SOX{8,9,10}.p2	AK009709|Rcl1|59028|RNA terminal phosphate cyclase-like 1	NM_021525|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK168153|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK012585|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK077751|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC053404|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC004574|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK153377|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AJ276895|Rcl1|59028|RNA terminal phosphate cyclase-like 1
mm9_v1_chr10_+_96942124_96942154	3.71258	SOX{8,9,10}.p2	NM_001190451|Dcn|13179|decorin
mm9_v1_chr15_-_88808967_88808984	3.71111	SOX{8,9,10}.p2	AK030396|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	AK043757|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	BC024719|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	NM_133241|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm9_v1_chr9_-_60535274_60535340	3.70076	SOX{8,9,10}.p2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr18_-_43219062_43219124	3.69809	SOX{8,9,10}.p2	BC026686|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK148956|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK013600|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_028392|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr7_-_52184801_52184822	3.69249	SOX{8,9,10}.p2	BC031433|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit
mm9_v1_chr3_+_89222458_89222496	3.68504	SOX{8,9,10}.p2	NM_011368|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr8_+_73993084_73993151	3.68218	SOX{8,9,10}.p2	NM_025600|Dda1|66498|DET1 and DDB1 associated 1	AK160132|Dda1|66498|DET1 and DDB1 associated 1	AK006318|Dda1|66498|DET1 and DDB1 associated 1	AK149980|Dda1|66498|DET1 and DDB1 associated 1	AK149117|Dda1|66498|DET1 and DDB1 associated 1	BC034701|Dda1|66498|DET1 and DDB1 associated 1	AK168085|Dda1|66498|DET1 and DDB1 associated 1	AK032966|Dda1|66498|DET1 and DDB1 associated 1	BC093523|Dda1|66498|DET1 and DDB1 associated 1
mm9_v1_chr12_+_25659777_25659836	3.67668	SOX{8,9,10}.p2	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr10_-_82996799_82996825	3.65833	SOX{8,9,10}.p2	AK046198|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	BC034531|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	AK086413|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr10_-_82996846_82996884	3.65432	SOX{8,9,10}.p2	AK141954|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	NM_153543|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr9_+_110666191_110666214	3.64485	SOX{8,9,10}.p2	AK011518|Myl3|17897|myosin, light polypeptide 3
mm9_v1_chr17_-_80114299_80114446	3.56444	SOX{8,9,10}.p2	AK137461|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	BC050063|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	NM_009994|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	U03283|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	AK139368|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1
mm9_v1_chr13_+_43218207_43218244	3.55557	SOX{8,9,10}.p2	NM_001005748|Phactr1|218194|phosphatase and actin regulator 1	AK166463|Phactr1|218194|phosphatase and actin regulator 1	BC025873|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr11_+_100437204_100437208	3.53821	SOX{8,9,10}.p2	AK041969|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK140280|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_001146318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr16_+_5885447_5885760	3.52732	SOX{8,9,10}.p2	AB041596|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AK158194|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr13_+_22127689_22127755	3.52192	SOX{8,9,10}.p2	BC147143|Hist1h2bk|319184|histone cluster 1, H2bk	BC147144|Hist1h2bk|319184|histone cluster 1, H2bk	NM_175665|Hist1h2bk|319184|histone cluster 1, H2bk
mm9_v1_chr5_+_122550987_122550996	3.49256	SOX{8,9,10}.p2	AK146674|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	BC061144|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	AK002367|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	NM_010861|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	M91602|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow
mm9_v1_chr9_+_110666178_110666184	3.49076	SOX{8,9,10}.p2	AK146943|Myl3|17897|myosin, light polypeptide 3	BC061222|Myl3|17897|myosin, light polypeptide 3	AK002312|Myl3|17897|myosin, light polypeptide 3	NM_010859|Myl3|17897|myosin, light polypeptide 3
mm9_v1_chr18_+_37885359_37885546	3.47415	SOX{8,9,10}.p2	BC054787|Pcdhga8|93716|protocadherin gamma subfamily A, 8	NM_033591|Pcdhga8|93716|protocadherin gamma subfamily A, 8	BC054555|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AK220461|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AY013802|Pcdhga8|93716|protocadherin gamma subfamily A, 8
mm9_v1_chr4_+_106584314_106584344	3.4614	SOX{8,9,10}.p2	BC003430|Ssbp3|72475|single-stranded DNA binding protein 3	AF500117|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chrX_-_101176574_101176590	3.45802	SOX{8,9,10}.p2	AF069992|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr8_+_73017009_73017206	3.44737	SOX{8,9,10}.p2	NM_018827|Crlf1|12931|cytokine receptor-like factor 1	AB040038|Crlf1|12931|cytokine receptor-like factor 1	BC107376|Crlf1|12931|cytokine receptor-like factor 1	BC107377|Crlf1|12931|cytokine receptor-like factor 1	BC114407|Crlf1|12931|cytokine receptor-like factor 1
mm9_v1_chr10_+_97106701_97106701	3.4444	SOX{8,9,10}.p2	AK005684|Epyc|13516|epiphycan	AK015223|Epyc|13516|epiphycan	NM_007884|Epyc|13516|epiphycan
mm9_v1_chr8_+_108939222_108939238	3.43926	SOX{8,9,10}.p2	AK032286|Zfp90|22751|zinc finger protein 90	AK154205|Zfp90|22751|zinc finger protein 90	NM_011764|Zfp90|22751|zinc finger protein 90
mm9_v1_chr2_-_84615535_84615589	3.43406	SOX{8,9,10}.p2	Y10386|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1	AF010254|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1	NM_009776|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm9_v1_chr11_-_120685860_120685860	3.43035	SOX{8,9,10}.p2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr18_-_23197156_23197163	3.41347	SOX{8,9,10}.p2	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr2_-_170232008_170232013	3.41097	SOX{8,9,10}.p2	AK008957|Bcas1|76960|breast carcinoma amplified sequence 1	AK031825|Bcas1|76960|breast carcinoma amplified sequence 1
mm9_v1_chr12_-_5091185_5091230	3.40742	SOX{8,9,10}.p2	AK039195|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr16_+_45094196_45094202	3.39993	SOX{8,9,10}.p2	AK032359|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr7_+_103359146_103359146	3.3958	SOX{8,9,10}.p2	AK147329|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)	NM_011858|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)
mm9_v1_chr5_+_48374328_48374415	3.38822	SOX{8,9,10}.p2	AK053182|Slit2|20563|slit homolog 2 (Drosophila)	AK053913|Slit2|20563|slit homolog 2 (Drosophila)	AK144573|Slit2|20563|slit homolog 2 (Drosophila)	NM_178804|Slit2|20563|slit homolog 2 (Drosophila)	AK084012|Slit2|20563|slit homolog 2 (Drosophila)	AK084293|Slit2|20563|slit homolog 2 (Drosophila)
mm9_v1_chr4_+_106584400_106584461	3.37914	SOX{8,9,10}.p2	AY167987|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr4_+_43888373_43888471	3.37865	SOX{8,9,10}.p2	BC132197|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC138065|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC145133|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK042266|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	NM_016678|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK157885|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK143657|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC053025|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AB006960|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs
mm9_v1_chr10_+_127795461_127795537	3.3784	SOX{8,9,10}.p2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr8_+_96561135_96561146	3.357	SOX{8,9,10}.p2	AK049824|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	BC040267|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr3_+_159502646_159502709	3.35389	SOX{8,9,10}.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr13_-_21879086_21879086	3.34367	SOX{8,9,10}.p2	NM_178184|Hist1h2an|319170|histone cluster 1, H2an
mm9_v1_chr2_-_57905140_57905276	3.34212	SOX{8,9,10}.p2	DQ334270|Ermn|77767|ermin, ERM-like protein	BC089515|Ermn|77767|ermin, ERM-like protein	NM_029972|Ermn|77767|ermin, ERM-like protein	BC090670|Ermn|77767|ermin, ERM-like protein	AK078089|Ermn|77767|ermin, ERM-like protein	AK136820|Ermn|77767|ermin, ERM-like protein	AK137305|Ermn|77767|ermin, ERM-like protein	AK020733|Ermn|77767|ermin, ERM-like protein	AK220372|Ermn|77767|ermin, ERM-like protein
mm9_v1_chr5_-_137510950_137511054	3.34084	SOX{8,9,10}.p2	AK192071|Ap1s1|11769|adaptor protein complex AP-1, sigma 1
mm9_v1_chr13_+_42804911_42805054	3.33561	SOX{8,9,10}.p2	BC048407|Phactr1|218194|phosphatase and actin regulator 1	BC061691|Phactr1|218194|phosphatase and actin regulator 1	NM_001005740|Phactr1|218194|phosphatase and actin regulator 1	AK048208|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr8_-_4259126_4259300	3.33256	SOX{8,9,10}.p2	AK158759|Ctxn1|330695|cortexin 1	BC028881|Ctxn1|330695|cortexin 1	AK154120|Ctxn1|330695|cortexin 1	NM_183315|Ctxn1|330695|cortexin 1
mm9_v1_chr2_-_30329737_30329744	3.33243	SOX{8,9,10}.p2	AK034055|Ier5l|72500|immediate early response 5-like
mm9_v1_chr17_+_25864702_25864739	3.3173	SOX{8,9,10}.p2	BC018186|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr13_-_89881946_89882116	3.29614	SOX{8,9,10}.p2	BC021652|Vcan|13003|versican	AK163927|Vcan|13003|versican	AK135324|Vcan|13003|versican	AK032794|Vcan|13003|versican	NM_001081249|Vcan|13003|versican	NM_001134474|Vcan|13003|versican	NM_001134475|Vcan|13003|versican	NM_019389|Vcan|13003|versican	NM_172955|Vcan|13003|versican
mm9_v1_chr1_+_154802091_154802137	3.28547	SOX{8,9,10}.p2	AK084041|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	AK083532|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr1_+_154802144_154802177	3.28305	SOX{8,9,10}.p2	AK129155|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr10_+_28863801_28863929	3.27411	SOX{8,9,10}.p2	NM_026138|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene	AK030682|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene
mm9_v1_chr1_+_64737918_64737918	3.2666	SOX{8,9,10}.p2	NM_001097644|Ccnyl1|227210|cyclin Y-like 1
mm9_v1_chr15_-_90880241_90880381	3.25035	SOX{8,9,10}.p2	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr11_-_51420064_51420093	3.24983	SOX{8,9,10}.p2	DQ397821|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	DQ397822|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr4_-_11893500_11893609	3.24834	SOX{8,9,10}.p2	AK133542|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	AK137550|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001033453|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098230|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chrX_+_68809128_68809157	3.23957	SOX{8,9,10}.p2	BC011276|Hmgb3|15354|high mobility group box 3	BC158037|Hmgb3|15354|high mobility group box 3
mm9_v1_chr1_-_170085798_170085873	3.23822	SOX{8,9,10}.p2	AK080184|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK032161|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK043495|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK085198|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr7_+_25292201_25292230	3.23024	SOX{8,9,10}.p2	BC096675|Zfp428|232969|zinc finger protein 428	BC024802|Zfp428|232969|zinc finger protein 428	AK010415|Zfp428|232969|zinc finger protein 428
mm9_v1_chr11_-_98590680_98590748	3.22656	SOX{8,9,10}.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr14_-_45839064_45839076	3.21791	SOX{8,9,10}.p2	AK039945|Txndc16|70561|thioredoxin domain containing 16	AK046466|Txndc16|70561|thioredoxin domain containing 16	NM_172597|Txndc16|70561|thioredoxin domain containing 16	BC060101|Txndc16|70561|thioredoxin domain containing 16	AK164111|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chrX_+_155897056_155897081	3.20867	SOX{8,9,10}.p2	AK019929|Mtap7d2|78283|MAP7 domain containing 2	AK031868|Mtap7d2|78283|MAP7 domain containing 2	AK043342|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr2_+_119444452_119444483	3.2076	SOX{8,9,10}.p2	AF305710|Nusap1|108907|nucleolar and spindle associated protein 1	AK042697|Nusap1|108907|nucleolar and spindle associated protein 1	AK044819|Nusap1|108907|nucleolar and spindle associated protein 1	AK076028|Nusap1|108907|nucleolar and spindle associated protein 1	AK088389|Nusap1|108907|nucleolar and spindle associated protein 1	AK038174|Nusap1|108907|nucleolar and spindle associated protein 1	BC004787|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr5_+_34326081_34326346	3.19492	SOX{8,9,10}.p2	BC147444|Gm1673|381633|predicted gene 1673	BC147468|Gm1673|381633|predicted gene 1673	BC048625|Gm1673|381633|predicted gene 1673	AK141724|Gm1673|381633|predicted gene 1673	NM_001033458|Gm1673|381633|predicted gene 1673	BC100514|Gm1673|381633|predicted gene 1673	BC055794|Gm1673|381633|predicted gene 1673	AK131594|Gm1673|381633|predicted gene 1673
mm9_v1_chr3_-_115832605_115832605	3.19457	SOX{8,9,10}.p2	BC029823|Vcam1|22329|vascular cell adhesion molecule 1	NM_011693|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr4_+_13670425_13670448	3.19453	SOX{8,9,10}.p2	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr10_-_115910578_115910595	3.18801	SOX{8,9,10}.p2	AF215892|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC117779|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	NM_021452|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC048471|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr10_-_119913204_119913291	3.18098	SOX{8,9,10}.p2	X58380|Hmga2|15364|high mobility group AT-hook 2	BC069985|Hmga2|15364|high mobility group AT-hook 2	BC085085|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr16_-_45724422_45724643	3.17965	SOX{8,9,10}.p2	BC043027|Tagln3|56370|transgelin 3	AB031291|Tagln3|56370|transgelin 3	AK013484|Tagln3|56370|transgelin 3	BC055338|Tagln3|56370|transgelin 3	NM_019754|Tagln3|56370|transgelin 3
mm9_v1_chr17_+_44215851_44215893	3.1721	SOX{8,9,10}.p2	AK220510|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138977|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138978|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC145484|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr11_+_100870814_100870858	3.17181	SOX{8,9,10}.p2	AK159114|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK172078|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK040343|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr10_+_127774845_127774868	3.17149	SOX{8,9,10}.p2	AK166814|Cs|12974|citrate synthase	AK012151|Cs|12974|citrate synthase	AK145643|Cs|12974|citrate synthase	AK167125|Cs|12974|citrate synthase	AK163273|Cs|12974|citrate synthase
mm9_v1_chr9_+_83728331_83728347	3.15283	SOX{8,9,10}.p2	AX775731|Ttk|22137|Ttk protein kinase	M86377|Ttk|22137|Ttk protein kinase
mm9_v1_chr12_+_52791952_52792023	3.14908	SOX{8,9,10}.p2	BC001985|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	NM_021710|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	AF092093|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1
mm9_v1_chrX_+_54043764_54043779	3.14618	SOX{8,9,10}.p2	BC055725|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr2_+_157385835_157385932	3.13385	SOX{8,9,10}.p2	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr5_-_24083185_24083284	3.13226	SOX{8,9,10}.p2	AK087990|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2	AK137233|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2	AK147937|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2	AK151545|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2	NM_001190443|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2	NM_013853|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2
mm9_v1_chr1_+_75542840_75542910	3.12866	SOX{8,9,10}.p2	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr7_+_25266986_25267120	3.1215	SOX{8,9,10}.p2	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr11_+_100870759_100870810	3.11843	SOX{8,9,10}.p2	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr8_+_74676404_74676467	3.11437	SOX{8,9,10}.p2	AK205532|Tpm4|326618|tropomyosin 4	AK207661|Tpm4|326618|tropomyosin 4
mm9_v1_chr18_+_37637421_37637642	3.11363	SOX{8,9,10}.p2	NM_053141|Pcdhb16|93887|protocadherin beta 16	AK030612|Pcdhb16|93887|protocadherin beta 16	AK036829|Pcdhb16|93887|protocadherin beta 16	BC115720|Pcdhb16|93887|protocadherin beta 16	BC116625|Pcdhb16|93887|protocadherin beta 16	AY013777|Pcdhb16|93887|protocadherin beta 16
mm9_v1_chr2_+_30219752_30219824	3.10609	SOX{8,9,10}.p2	AK165996|Fam73b|108958|family with sequence similarity 73, member B	AK154200|Fam73b|108958|family with sequence similarity 73, member B	AK140122|Fam73b|108958|family with sequence similarity 73, member B	AK040713|Fam73b|108958|family with sequence similarity 73, member B	AK077618|Fam73b|108958|family with sequence similarity 73, member B
mm9_v1_chr19_+_10116001_10116070	3.10532	SOX{8,9,10}.p2	NM_021890|Fads3|60527|fatty acid desaturase 3	AK090042|Fads3|60527|fatty acid desaturase 3	AK172509|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr3_-_122737855_122737904	3.10124	SOX{8,9,10}.p2	AK003634|Myoz2|59006|myozenin 2	AJ252148|Myoz2|59006|myozenin 2	BC024360|Myoz2|59006|myozenin 2	AY013296|Myoz2|59006|myozenin 2	AK085927|Myoz2|59006|myozenin 2	NM_021503|Myoz2|59006|myozenin 2
mm9_v1_chrX_+_68809163_68809181	3.09824	SOX{8,9,10}.p2	NM_008253|Hmgb3|15354|high mobility group box 3	AK032163|Hmgb3|15354|high mobility group box 3
mm9_v1_chr2_+_119444033_119444033	3.09056	SOX{8,9,10}.p2	BC100392|Nusap1|108907|nucleolar and spindle associated protein 1	NM_001042652|Nusap1|108907|nucleolar and spindle associated protein 1	NM_133851|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr8_+_11556679_11556909	3.08651	SOX{8,9,10}.p2	BC147770|Ing1|26356|inhibitor of growth family, member 1	BC147784|Ing1|26356|inhibitor of growth family, member 1	AB221554|Ing1|26356|inhibitor of growth family, member 1	AF149820|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr17_-_25864310_25864359	3.08609	SOX{8,9,10}.p2	BC083096|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	AK052673|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	AK077947|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	BC024142|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	NM_145409|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
mm9_v1_chr1_+_137635977_137636035	3.07548	SOX{8,9,10}.p2	CT010278|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr4_+_117222924_117223239	3.06948	SOX{8,9,10}.p2	AK144107|Eri3|140546|exoribonuclease 3	BC096545|Eri3|140546|exoribonuclease 3	AK083017|Eri3|140546|exoribonuclease 3	NM_080469|Eri3|140546|exoribonuclease 3	BC116685|Eri3|140546|exoribonuclease 3	BC117540|Eri3|140546|exoribonuclease 3
mm9_v1_chr9_+_72773456_72773456	3.06093	SOX{8,9,10}.p2	AK011208|Pygo1|72135|pygopus 1	NM_028116|Pygo1|72135|pygopus 1
mm9_v1_chr5_-_114893989_114894069	3.05183	SOX{8,9,10}.p2	BC022159|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK034288|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK088785|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK142286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK020286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	BC057558|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	NM_029956|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK148421|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)
mm9_v1_chr3_+_99057703_99057793	3.05091	SOX{8,9,10}.p2	AY662679|Tbx15|21384|T-box 15	AF041822|Tbx15|21384|T-box 15
mm9_v1_chr19_+_5038825_5038950	3.04952	SOX{8,9,10}.p2	AK158899|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	NM_175383|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK050347|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	BC069927|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK083857|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm9_v1_chr11_-_94335350_94335511	3.04634	SOX{8,9,10}.p2	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr1_-_72921438_72921462	3.03631	SOX{8,9,10}.p2	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr12_-_73337707_73337756	3.0357	SOX{8,9,10}.p2	AK002997|Rtn1|104001|reticulon 1	NM_001007596|Rtn1|104001|reticulon 1
mm9_v1_chr14_+_55050437_55050513	3.02292	SOX{8,9,10}.p2	AK155117|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK088476|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK165014|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	NM_008608|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK163601|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	BC076638|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	U54984|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149907|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK040968|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK138611|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK134340|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149636|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr13_+_51942043_51942063	3.0086	SOX{8,9,10}.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr14_+_21748646_21748736	3.00709	SOX{8,9,10}.p2	BC008520|Vcl|22330|vinculin	NM_009502|Vcl|22330|vinculin	L18880|Vcl|22330|vinculin
mm9_v1_chr2_+_67955769_67955862	2.99046	SOX{8,9,10}.p2	NM_020283|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC094660|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132246|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132528|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm9_v1_chrX_+_130385546_130385673	2.98678	SOX{8,9,10}.p2	BC049944|Tnmd|64103|tenomodulin	NM_022322|Tnmd|64103|tenomodulin	AF191768|Tnmd|64103|tenomodulin	AK003748|Tnmd|64103|tenomodulin	AF219993|Tnmd|64103|tenomodulin
mm9_v1_chr7_-_52184752_52184788	2.98128	SOX{8,9,10}.p2	AK135424|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit
mm9_v1_chr2_+_180332926_180333016	2.97679	SOX{8,9,10}.p2	NM_009936|Col9a3|12841|collagen, type IX, alpha 3	AK030350|Col9a3|12841|collagen, type IX, alpha 3	AF349718|Col9a3|12841|collagen, type IX, alpha 3
mm9_v1_chr5_+_125343060_125343124	2.96817	SOX{8,9,10}.p2	AK143192|Zfp664|269704|zinc finger protein 664	AK086580|Zfp664|269704|zinc finger protein 664	AK039671|Zfp664|269704|zinc finger protein 664	NM_001081750|Zfp664|269704|zinc finger protein 664	AK165974|Zfp664|269704|zinc finger protein 664
mm9_v1_chr1_-_191167582_191167722	2.95325	SOX{8,9,10}.p2	NM_010607|Kcnk2|16526|potassium channel, subfamily K, member 2	U73488|Kcnk2|16526|potassium channel, subfamily K, member 2	AK080342|Kcnk2|16526|potassium channel, subfamily K, member 2
mm9_v1_chr5_-_136020946_136020998	2.9468	SOX{8,9,10}.p2	AK147246|Hip1|215114|huntingtin interacting protein 1	AK147269|Hip1|215114|huntingtin interacting protein 1	AK166346|Hip1|215114|huntingtin interacting protein 1	AK011828|Hip1|215114|huntingtin interacting protein 1	BC017516|Hip1|215114|huntingtin interacting protein 1	AK087586|Hip1|215114|huntingtin interacting protein 1	NM_146001|Hip1|215114|huntingtin interacting protein 1
mm9_v1_chr1_+_62749850_62750115	2.94585	SOX{8,9,10}.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr2_+_109533772_109533792	2.94177	SOX{8,9,10}.p2	AK033127|Bdnf|12064|brain derived neurotrophic factor	AK017559|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr7_-_133606617_133606631	2.93412	SOX{8,9,10}.p2	AY081946|Atp2a1|11937|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
mm9_v1_chr5_-_24083072_24083180	2.92413	SOX{8,9,10}.p2	BC003300|Abcf2|27407|ATP-binding cassette, sub-family F (GCN20), member 2
mm9_v1_chr8_-_75877407_75877449	2.90958	SOX{8,9,10}.p2	AK122328|Large|16795|like-glycosyltransferase
mm9_v1_chr7_-_52184789_52184800	2.90882	SOX{8,9,10}.p2	AK155515|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit
mm9_v1_chr7_+_25292105_25292148	2.90784	SOX{8,9,10}.p2	NM_146183|Zfp428|232969|zinc finger protein 428	AK080517|Zfp428|232969|zinc finger protein 428
mm9_v1_chr7_-_11080687_11080731	2.90595	SOX{8,9,10}.p2	BC050942|Zik1|22775|zinc finger protein interacting with K protein 1	BC067196|Zik1|22775|zinc finger protein interacting with K protein 1	AK159077|Zik1|22775|zinc finger protein interacting with K protein 1	AK146692|Zik1|22775|zinc finger protein interacting with K protein 1	U69133|Zik1|22775|zinc finger protein interacting with K protein 1	NM_009577|Zik1|22775|zinc finger protein interacting with K protein 1
mm9_v1_chr1_+_166179383_166179419	2.90423	SOX{8,9,10}.p2	AF326916|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2
mm9_v1_chr10_-_59414516_59414582	2.88675	SOX{8,9,10}.p2	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr10_+_127520319_127520396	2.88461	SOX{8,9,10}.p2	AK166525|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK002621|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK011035|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK083276|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK145684|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK148891|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK150599|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151081|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152788|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152976|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159737|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160608|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166603|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166979|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167119|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168941|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK169184|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK010314|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159978|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167764|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	NM_016774|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151600|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152730|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159444|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167728|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167160|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK084009|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK153099|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160199|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK164383|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168692|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC037127|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC046616|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AF030559|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC013253|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr10_+_127774778_127774839	2.88268	SOX{8,9,10}.p2	AK149990|Cs|12974|citrate synthase	AK010298|Cs|12974|citrate synthase
mm9_v1_chrX_-_100381703_100381961	2.87571	SOX{8,9,10}.p2	BC115708|Nap1l2|17954|nucleosome assembly protein 1-like 2	BC115761|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK051439|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK131621|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK077430|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr4_-_129852325_129852365	2.87371	SOX{8,9,10}.p2	AK185091|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1	AB047402|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1	NM_023476|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1
mm9_v1_chr16_-_8672242_8672250	2.86832	SOX{8,9,10}.p2	AK170411|Carhsp1|52502|calcium regulated heat stable protein 1	AK002853|Carhsp1|52502|calcium regulated heat stable protein 1	AK004711|Carhsp1|52502|calcium regulated heat stable protein 1	AK143612|Carhsp1|52502|calcium regulated heat stable protein 1	AK154460|Carhsp1|52502|calcium regulated heat stable protein 1	AK168504|Carhsp1|52502|calcium regulated heat stable protein 1	NM_025821|Carhsp1|52502|calcium regulated heat stable protein 1	AK003926|Carhsp1|52502|calcium regulated heat stable protein 1	AK149875|Carhsp1|52502|calcium regulated heat stable protein 1	AK155318|Carhsp1|52502|calcium regulated heat stable protein 1	AK158112|Carhsp1|52502|calcium regulated heat stable protein 1	AK158252|Carhsp1|52502|calcium regulated heat stable protein 1	AK165373|Carhsp1|52502|calcium regulated heat stable protein 1	AK171282|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr9_+_65738168_65738258	2.86691	SOX{8,9,10}.p2	AK011645|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK017673|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK011835|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK013105|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	BC021413|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	BC096393|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AY496943|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr4_-_82151004_82151131	2.85213	SOX{8,9,10}.p2	BC062908|Nfib|18028|nuclear factor I/B	AK083167|Nfib|18028|nuclear factor I/B
mm9_v1_chr1_-_166388431_166388540	2.84089	SOX{8,9,10}.p2	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr1_-_137210293_137210334	2.82905	SOX{8,9,10}.p2	AF106620|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC010830|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC098216|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003114|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003129|Timm17a|21854|translocase of inner mitochondrial membrane 17a	NM_011590|Timm17a|21854|translocase of inner mitochondrial membrane 17a
mm9_v1_chr8_+_96561097_96561129	2.8241	SOX{8,9,10}.p2	AK029629|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_001093757|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_177767|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK156765|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr5_-_144670646_144670709	2.81971	SOX{8,9,10}.p2	BC026958|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024410|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC026972|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024480|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_001172146|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_146165|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm9_v1_chr16_-_8672226_8672229	2.8191	SOX{8,9,10}.p2	AK150245|Carhsp1|52502|calcium regulated heat stable protein 1	BC086754|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr16_-_45844409_45844495	2.81168	SOX{8,9,10}.p2	AK165251|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	AF506821|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	NM_153412|Phldb2|208177|pleckstrin homology-like domain, family B, member 2
mm9_v1_chr8_+_96561162_96561175	2.81019	SOX{8,9,10}.p2	AK166343|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chrX_+_130385690_130385739	2.80734	SOX{8,9,10}.p2	AK014761|Tnmd|64103|tenomodulin	BC006919|Tnmd|64103|tenomodulin	AB055422|Tnmd|64103|tenomodulin
mm9_v1_chr10_+_90292453_90292587	2.80048	SOX{8,9,10}.p2	AK038609|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr9_-_79566271_79566499	2.78727	SOX{8,9,10}.p2	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr11_-_3256143_3256143	2.78399	SOX{8,9,10}.p2	AB012092|Limk2|16886|LIM motif-containing protein kinase 2	AB012291|Limk2|16886|LIM motif-containing protein kinase 2	NM_001034030|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr11_-_119878383_119878471	2.7833	SOX{8,9,10}.p2	AK147239|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr9_+_83728295_83728324	2.77462	SOX{8,9,10}.p2	NM_001110265|Ttk|22137|Ttk protein kinase	NM_009445|Ttk|22137|Ttk protein kinase	AK164093|Ttk|22137|Ttk protein kinase	AK049200|Ttk|22137|Ttk protein kinase	AK041487|Ttk|22137|Ttk protein kinase	BC058851|Ttk|22137|Ttk protein kinase
mm9_v1_chr10_+_97069816_97069972	2.77383	SOX{8,9,10}.p2	AK086197|Kera|16545|keratocan	NM_008438|Kera|16545|keratocan	AF022256|Kera|16545|keratocan	BC114980|Kera|16545|keratocan
mm9_v1_chr1_+_45368443_45368526	2.77312	SOX{8,9,10}.p2	AK220558|Col3a1|12825|collagen, type III, alpha 1	AK013329|Col3a1|12825|collagen, type III, alpha 1	AK041115|Col3a1|12825|collagen, type III, alpha 1	AK048546|Col3a1|12825|collagen, type III, alpha 1	AK157762|Col3a1|12825|collagen, type III, alpha 1	AK159763|Col3a1|12825|collagen, type III, alpha 1	AK159920|Col3a1|12825|collagen, type III, alpha 1	AK160048|Col3a1|12825|collagen, type III, alpha 1	AK160107|Col3a1|12825|collagen, type III, alpha 1	AK160818|Col3a1|12825|collagen, type III, alpha 1	AK147542|Col3a1|12825|collagen, type III, alpha 1	AK159985|Col3a1|12825|collagen, type III, alpha 1	AK029212|Col3a1|12825|collagen, type III, alpha 1	BC052398|Col3a1|12825|collagen, type III, alpha 1	BC043089|Col3a1|12825|collagen, type III, alpha 1	AK031544|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr16_+_45094214_45094287	2.75887	SOX{8,9,10}.p2	AB075019|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr12_+_72932132_72932152	2.7561	SOX{8,9,10}.p2	BC047431|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK053785|Daam1|208846|dishevelled associated activator of morphogenesis 1	AY426535|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr15_-_100325669_100325697	2.7466	SOX{8,9,10}.p2	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr8_+_96561180_96561211	2.7443	SOX{8,9,10}.p2	AK122532|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK164189|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr18_-_43847367_43847426	2.74232	SOX{8,9,10}.p2	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr2_-_84316891_84316933	2.73461	SOX{8,9,10}.p2	BC036146|Tfpi|21788|tissue factor pathway inhibitor	NM_001177319|Tfpi|21788|tissue factor pathway inhibitor	AK034752|Tfpi|21788|tissue factor pathway inhibitor	NM_001177320|Tfpi|21788|tissue factor pathway inhibitor
mm9_v1_chr1_+_185858324_185858355	2.72781	SOX{8,9,10}.p2	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
mm9_v1_chr4_-_126430511_126430686	2.7272	SOX{8,9,10}.p2	BC017126|Ncdn|26562|neurochondrin	AK154889|Ncdn|26562|neurochondrin	AK170502|Ncdn|26562|neurochondrin	NM_011986|Ncdn|26562|neurochondrin
mm9_v1_chr3_+_89876566_89876658	2.71543	SOX{8,9,10}.p2	U04541|Tpm3|59069|tropomyosin 3, gamma	BC029186|Tpm3|59069|tropomyosin 3, gamma	NM_022314|Tpm3|59069|tropomyosin 3, gamma	AF317223|Tpm3|59069|tropomyosin 3, gamma
mm9_v1_chr3_+_67178037_67178091	2.7005	SOX{8,9,10}.p2	BC027526|Mlf1|17349|myeloid leukemia factor 1	AF100171|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr9_+_78463569_78463695	2.69097	SOX{8,9,10}.p2	AK076475|Cd109|235505|CD109 antigen	AK029247|Cd109|235505|CD109 antigen	BC052443|Cd109|235505|CD109 antigen	AK036799|Cd109|235505|CD109 antigen
mm9_v1_chr18_-_33623069_33623089	2.68301	SOX{8,9,10}.p2	BC054762|D0H4S114|27528|DNA segment, human D4S114	NM_001109990|D0H4S114|27528|DNA segment, human D4S114	X70398|D0H4S114|27528|DNA segment, human D4S114	AK048361|D0H4S114|27528|DNA segment, human D4S114	AK081502|D0H4S114|27528|DNA segment, human D4S114	AK133769|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr4_-_41717062_41717084	2.68218	SOX{8,9,10}.p2	AF082392|Ccl27a|20301|chemokine (C-C motif) ligand 27A	AF099931|Ccl27a|20301|chemokine (C-C motif) ligand 27A	AB013398|Ccl27a|20301|chemokine (C-C motif) ligand 27A	BC107226|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_011336|Ccl27a|20301|chemokine (C-C motif) ligand 27A
mm9_v1_chr19_+_10116104_10116185	2.67912	SOX{8,9,10}.p2	BC071266|Fads3|60527|fatty acid desaturase 3	AK154534|Fads3|60527|fatty acid desaturase 3	AK029318|Fads3|60527|fatty acid desaturase 3	AK080414|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr15_-_98364333_98364415	2.67889	SOX{8,9,10}.p2	BC083325|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene
mm9_v1_chr3_-_81878554_81878643	2.6634	SOX{8,9,10}.p2	AK147128|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AK139406|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AF020339|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AF297083|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	BC050945|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	BC056995|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	NM_001161796|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	NM_017469|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3
mm9_v1_chr9_-_108166193_108166275	2.66008	SOX{8,9,10}.p2	AK053886|Dag1|13138|dystroglycan 1	AK145048|Dag1|13138|dystroglycan 1	AK036174|Dag1|13138|dystroglycan 1
mm9_v1_chr11_-_97883924_97884006	2.65752	SOX{8,9,10}.p2	BC077713|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AK155193|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_001159319|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_031173|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_145121|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AF322905|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr1_-_192803077_192803174	2.65341	SOX{8,9,10}.p2	BC024141|Vash2|226841|vasohibin 2	AK163193|Vash2|226841|vasohibin 2	AK045261|Vash2|226841|vasohibin 2	AK078596|Vash2|226841|vasohibin 2
mm9_v1_chr16_-_67621054_67621188	2.64422	SOX{8,9,10}.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr10_+_115738429_115738633	2.64048	SOX{8,9,10}.p2	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr7_+_149627709_149627734	2.63205	SOX{8,9,10}.p2	BC028515|Tnni2|21953|troponin I, skeletal, fast 2
mm9_v1_chr17_+_21082459_21082491	2.62971	SOX{8,9,10}.p2	AB021743|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr2_+_24805264_24805356	2.62111	SOX{8,9,10}.p2	AK088063|Zmynd19|67187|zinc finger, MYND domain containing 19	AK012484|Zmynd19|67187|zinc finger, MYND domain containing 19	NM_026021|Zmynd19|67187|zinc finger, MYND domain containing 19	AK005908|Zmynd19|67187|zinc finger, MYND domain containing 19	BC027321|Zmynd19|67187|zinc finger, MYND domain containing 19	AJ409150|Zmynd19|67187|zinc finger, MYND domain containing 19
mm9_v1_chr16_+_5884885_5884885	2.6207	SOX{8,9,10}.p2	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr10_+_80643263_80643395	2.61846	SOX{8,9,10}.p2	AK189998|Eef2|13629|eukaryotic translation elongation factor 2	AK190198|Eef2|13629|eukaryotic translation elongation factor 2	AK190350|Eef2|13629|eukaryotic translation elongation factor 2	AK190868|Eef2|13629|eukaryotic translation elongation factor 2	AK191552|Eef2|13629|eukaryotic translation elongation factor 2	AK191881|Eef2|13629|eukaryotic translation elongation factor 2	AK192244|Eef2|13629|eukaryotic translation elongation factor 2	AK192889|Eef2|13629|eukaryotic translation elongation factor 2	AK192915|Eef2|13629|eukaryotic translation elongation factor 2	AK193101|Eef2|13629|eukaryotic translation elongation factor 2	AK193468|Eef2|13629|eukaryotic translation elongation factor 2	AK193703|Eef2|13629|eukaryotic translation elongation factor 2	AK193872|Eef2|13629|eukaryotic translation elongation factor 2	AK194719|Eef2|13629|eukaryotic translation elongation factor 2	AK195368|Eef2|13629|eukaryotic translation elongation factor 2	AK195633|Eef2|13629|eukaryotic translation elongation factor 2	AK195893|Eef2|13629|eukaryotic translation elongation factor 2	AK196946|Eef2|13629|eukaryotic translation elongation factor 2	AK197219|Eef2|13629|eukaryotic translation elongation factor 2	AK197725|Eef2|13629|eukaryotic translation elongation factor 2	AK198008|Eef2|13629|eukaryotic translation elongation factor 2	AK198317|Eef2|13629|eukaryotic translation elongation factor 2	AK198429|Eef2|13629|eukaryotic translation elongation factor 2	AK199118|Eef2|13629|eukaryotic translation elongation factor 2	AK200031|Eef2|13629|eukaryotic translation elongation factor 2	AK200070|Eef2|13629|eukaryotic translation elongation factor 2	AK200383|Eef2|13629|eukaryotic translation elongation factor 2	AK201054|Eef2|13629|eukaryotic translation elongation factor 2	AK201169|Eef2|13629|eukaryotic translation elongation factor 2	AK201226|Eef2|13629|eukaryotic translation elongation factor 2	AK201313|Eef2|13629|eukaryotic translation elongation factor 2	AK201376|Eef2|13629|eukaryotic translation elongation factor 2	AK202006|Eef2|13629|eukaryotic translation elongation factor 2	AK202706|Eef2|13629|eukaryotic translation elongation factor 2	AK202834|Eef2|13629|eukaryotic translation elongation factor 2	AK203709|Eef2|13629|eukaryotic translation elongation factor 2	AK203838|Eef2|13629|eukaryotic translation elongation factor 2	AK204069|Eef2|13629|eukaryotic translation elongation factor 2	AK204359|Eef2|13629|eukaryotic translation elongation factor 2	AK204850|Eef2|13629|eukaryotic translation elongation factor 2	AK207898|Eef2|13629|eukaryotic translation elongation factor 2	AK215864|Eef2|13629|eukaryotic translation elongation factor 2	AK215877|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr8_-_94325138_94325552	2.61174	SOX{8,9,10}.p2	Y15001|Irx3|16373|Iroquois related homeobox 3 (Drosophila)	BC085500|Irx3|16373|Iroquois related homeobox 3 (Drosophila)	NM_008393|Irx3|16373|Iroquois related homeobox 3 (Drosophila)	BC020464|Irx3|16373|Iroquois related homeobox 3 (Drosophila)	AK143023|Irx3|16373|Iroquois related homeobox 3 (Drosophila)	BC067195|Irx3|16373|Iroquois related homeobox 3 (Drosophila)
mm9_v1_chr11_+_69659873_69659874	2.60593	SOX{8,9,10}.p2	AK075841|Plscr3|70310|phospholipid scramblase 3	NM_001168497|Plscr3|70310|phospholipid scramblase 3
mm9_v1_chr13_-_89881804_89881848	2.60577	SOX{8,9,10}.p2	D28599|Vcan|13003|versican	D32040|Vcan|13003|versican
mm9_v1_chr15_-_12479631_12479703	2.59569	SOX{8,9,10}.p2	AK021207|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr2_+_177876635_177876639	2.59192	SOX{8,9,10}.p2	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr14_-_45838944_45839057	2.59064	SOX{8,9,10}.p2	BC052488|Txndc16|70561|thioredoxin domain containing 16	AK017582|Txndc16|70561|thioredoxin domain containing 16	AK034025|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr15_+_25682945_25682960	2.59001	SOX{8,9,10}.p2	AK161653|Myo10|17909|myosin X
mm9_v1_chr7_+_52590612_52590774	2.58867	SOX{8,9,10}.p2	AK017230|Hrc|15464|histidine rich calcium binding protein	NM_010473|Hrc|15464|histidine rich calcium binding protein	AF132218|Hrc|15464|histidine rich calcium binding protein	AF158597|Hrc|15464|histidine rich calcium binding protein	BC141121|Hrc|15464|histidine rich calcium binding protein
mm9_v1_chr7_-_149846916_149846939	2.58306	SOX{8,9,10}.p2	NM_001122736|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr13_+_38436987_38437005	2.56624	SOX{8,9,10}.p2	AK041210|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr15_-_103070227_103070257	2.55828	SOX{8,9,10}.p2	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr11_+_93905557_93905590	2.54039	SOX{8,9,10}.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr10_-_24919916_24919967	2.52727	SOX{8,9,10}.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr10_+_98478207_98478246	2.52549	SOX{8,9,10}.p2	BC025199|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chrX_+_68809092_68809096	2.52199	SOX{8,9,10}.p2	AK141399|Hmgb3|15354|high mobility group box 3	AK146795|Hmgb3|15354|high mobility group box 3
mm9_v1_chr9_-_30978164_30978202	2.5135	SOX{8,9,10}.p2	AK190965|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	M97216|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr13_-_96388412_96388451	2.51265	SOX{8,9,10}.p2	AK146194|F2r|14062|coagulation factor II (thrombin) receptor	AK085990|F2r|14062|coagulation factor II (thrombin) receptor	AK159282|F2r|14062|coagulation factor II (thrombin) receptor	AK160032|F2r|14062|coagulation factor II (thrombin) receptor
mm9_v1_chrX_+_68809103_68809115	2.50543	SOX{8,9,10}.p2	AK159119|Hmgb3|15354|high mobility group box 3	AK159322|Hmgb3|15354|high mobility group box 3
mm9_v1_chr10_-_128063522_128063566	2.50397	SOX{8,9,10}.p2	BC100456|Rps26|27370|ribosomal protein S26	AK010689|Rps26|27370|ribosomal protein S26	AK008301|Rps26|27370|ribosomal protein S26	AK012722|Rps26|27370|ribosomal protein S26	AK018702|Rps26|27370|ribosomal protein S26	AK152132|Rps26|27370|ribosomal protein S26	NM_013765|Rps26|27370|ribosomal protein S26
mm9_v1_chr14_+_47380287_47380301	2.50189	SOX{8,9,10}.p2	AK146312|Cdkn3|72391|cyclin-dependent kinase inhibitor 3
mm9_v1_chr11_+_69660115_69660155	2.498	SOX{8,9,10}.p2	NM_023564|Plscr3|70310|phospholipid scramblase 3	AK011716|Plscr3|70310|phospholipid scramblase 3	AK166288|Plscr3|70310|phospholipid scramblase 3	AK172635|Plscr3|70310|phospholipid scramblase 3
mm9_v1_chr4_+_8462805_8462808	2.49693	SOX{8,9,10}.p2	AK135421|Rab2a|59021|RAB2A, member RAS oncogene family	AK163320|Rab2a|59021|RAB2A, member RAS oncogene family	AK146179|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr4_-_134828503_134828682	2.47209	SOX{8,9,10}.p2	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr11_-_59653240_59653315	2.46943	SOX{8,9,10}.p2	AK142318|Cops3|26572|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)	AK048906|Cops3|26572|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)	AF071313|Cops3|26572|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)	BC068179|Cops3|26572|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)	NM_011991|Cops3|26572|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm9_v1_chr3_-_83967952_83967954	2.46788	SOX{8,9,10}.p2	AK054540|Trim2|80890|tripartite motif-containing 2
mm9_v1_chrX_+_93651684_93651766	2.46021	SOX{8,9,10}.p2	NM_001159627|Heph|15203|hephaestin	NM_181273|Heph|15203|hephaestin	AK081330|Heph|15203|hephaestin	AK129194|Heph|15203|hephaestin	AK032895|Heph|15203|hephaestin	AK086923|Heph|15203|hephaestin
mm9_v1_chr9_-_108166100_108166104	2.45985	SOX{8,9,10}.p2	BC007150|Dag1|13138|dystroglycan 1
mm9_v1_chr7_+_86040793_86040943	2.44935	SOX{8,9,10}.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr14_-_7859962_7859962	2.44745	SOX{8,9,10}.p2	NM_001164727|Gm10406|100038847|predicted gene 10406
mm9_v1_chr10_+_90292388_90292441	2.4455	SOX{8,9,10}.p2	AK032061|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr7_-_133606586_133606595	2.43991	SOX{8,9,10}.p2	BC036292|Atp2a1|11937|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	NM_007504|Atp2a1|11937|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
mm9_v1_chr11_-_43239663_43239784	2.43212	SOX{8,9,10}.p2	NM_001131054|Pttg1|30939|pituitary tumor-transforming gene 1	BC023324|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr7_-_91558468_91558528	2.4319	SOX{8,9,10}.p2	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr15_+_103070840_103070935	2.4273	SOX{8,9,10}.p2	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr5_-_38550627_38550759	2.42682	SOX{8,9,10}.p2	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr14_+_48283430_48283453	2.42637	SOX{8,9,10}.p2	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr8_+_74676812_74676920	2.42601	SOX{8,9,10}.p2	
mm9_v1_chr1_-_173957316_173957398	2.425	SOX{8,9,10}.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr10_+_44786959_44787139	2.42267	SOX{8,9,10}.p2	AK053816|Prep|19072|prolyl endopeptidase	AK163787|Prep|19072|prolyl endopeptidase	AK141851|Prep|19072|prolyl endopeptidase	AK170570|Prep|19072|prolyl endopeptidase	BC012869|Prep|19072|prolyl endopeptidase	NM_011156|Prep|19072|prolyl endopeptidase	AK076257|Prep|19072|prolyl endopeptidase	AK133875|Prep|19072|prolyl endopeptidase	AK161528|Prep|19072|prolyl endopeptidase	BC050830|Prep|19072|prolyl endopeptidase	AB007631|Prep|19072|prolyl endopeptidase
mm9_v1_chr3_+_67178016_67178018	2.416	SOX{8,9,10}.p2	AK007292|Mlf1|17349|myeloid leukemia factor 1	AK133448|Mlf1|17349|myeloid leukemia factor 1	NM_001039543|Mlf1|17349|myeloid leukemia factor 1	NM_010801|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr10_-_115910911_115910982	2.41054	SOX{8,9,10}.p2	AK013647|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr1_+_141351340_141351508	2.4064	SOX{8,9,10}.p2	AK052326|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	NM_009791|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK050785|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AF533752|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK083710|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK079744|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK052515|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AY971958|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm9_v1_chr16_+_13986691_13986753	2.40394	SOX{8,9,10}.p2	AK049997|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK076136|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK139470|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK136859|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	NM_144518|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK019307|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	BC022741|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK035868|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene
mm9_v1_chr7_-_52184840_52184904	2.40176	SOX{8,9,10}.p2	NM_001077264|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit	NM_007458|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit
mm9_v1_chr12_-_101121613_101121712	2.39772	SOX{8,9,10}.p2	BC049109|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK035051|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK011836|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK011507|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	NM_030172|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK132473|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene
mm9_v1_chr14_-_34260308_34260313	2.39217	SOX{8,9,10}.p2	BC053027|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chrX_+_132779615_132779721	2.38596	SOX{8,9,10}.p2	NM_011712|Wbp5|22381|WW domain binding protein 5	AY459189|Wbp5|22381|WW domain binding protein 5	AK017717|Wbp5|22381|WW domain binding protein 5	AK002214|Wbp5|22381|WW domain binding protein 5	BC020289|Wbp5|22381|WW domain binding protein 5	BC007478|Wbp5|22381|WW domain binding protein 5
mm9_v1_chr9_+_21172314_21172446	2.38235	SOX{8,9,10}.p2	AK150276|Ilf3|16201|interleukin enhancer binding factor 3	AK128936|Ilf3|16201|interleukin enhancer binding factor 3	AK048096|Ilf3|16201|interleukin enhancer binding factor 3	AK077560|Ilf3|16201|interleukin enhancer binding factor 3	BC047272|Ilf3|16201|interleukin enhancer binding factor 3	AF497751|Ilf3|16201|interleukin enhancer binding factor 3	AF497752|Ilf3|16201|interleukin enhancer binding factor 3	DQ104405|Ilf3|16201|interleukin enhancer binding factor 3	DQ104406|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042707|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042708|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042709|Ilf3|16201|interleukin enhancer binding factor 3	NM_010561|Ilf3|16201|interleukin enhancer binding factor 3
mm9_v1_chr19_-_6982516_6982562	2.37873	SOX{8,9,10}.p2	AK209224|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr7_+_25292375_25292405	2.37771	SOX{8,9,10}.p2	AK139174|Zfp428|232969|zinc finger protein 428
mm9_v1_chr5_+_54200858_54200899	2.36399	SOX{8,9,10}.p2	NM_144517|Tbc1d19|67249|TBC1 domain family, member 19	AK083084|Tbc1d19|67249|TBC1 domain family, member 19
mm9_v1_chr2_-_113878535_113878550	2.35335	SOX{8,9,10}.p2	BC062138|Actc1|11464|actin, alpha, cardiac muscle 1	AK014303|Actc1|11464|actin, alpha, cardiac muscle 1	AK146496|Actc1|11464|actin, alpha, cardiac muscle 1	AK146899|Actc1|11464|actin, alpha, cardiac muscle 1	AK168637|Actc1|11464|actin, alpha, cardiac muscle 1	AK168661|Actc1|11464|actin, alpha, cardiac muscle 1	AK168831|Actc1|11464|actin, alpha, cardiac muscle 1	AK169161|Actc1|11464|actin, alpha, cardiac muscle 1	AK169165|Actc1|11464|actin, alpha, cardiac muscle 1	BC100600|Actc1|11464|actin, alpha, cardiac muscle 1	NM_009608|Actc1|11464|actin, alpha, cardiac muscle 1	AK014307|Actc1|11464|actin, alpha, cardiac muscle 1
mm9_v1_chr9_-_108166059_108166072	2.34881	SOX{8,9,10}.p2	AK038702|Dag1|13138|dystroglycan 1	NM_010017|Dag1|13138|dystroglycan 1
mm9_v1_chr12_+_52449216_52449372	2.34308	SOX{8,9,10}.p2	NM_001015099|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	NM_001167963|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	NM_001167964|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	AK033513|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	AK129332|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	BC086455|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	AK084256|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase	AK031333|G2e3|217558|G2/M-phase specific E3 ubiquitin ligase
mm9_v1_chr10_+_127774872_127774973	2.34253	SOX{8,9,10}.p2	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr8_-_114255972_114256047	2.32595	SOX{8,9,10}.p2	AK166248|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK079554|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK159168|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK159297|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK138372|Bcar1|12927|breast cancer anti-estrogen resistance 1	U28151|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167352|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167504|Bcar1|12927|breast cancer anti-estrogen resistance 1	NM_001198839|Bcar1|12927|breast cancer anti-estrogen resistance 1
mm9_v1_chr8_-_87323896_87323913	2.32284	SOX{8,9,10}.p2	U57636|Nfix|18032|nuclear factor I/X
mm9_v1_chr2_-_152655725_152655826	2.32256	SOX{8,9,10}.p2	U10100|Bcl2l1|12048|BCL2-like 1	U10101|Bcl2l1|12048|BCL2-like 1	X83574|Bcl2l1|12048|BCL2-like 1	BC089017|Bcl2l1|12048|BCL2-like 1	U51278|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr18_+_37644674_37644812	2.31772	SOX{8,9,10}.p2	BC017149|Pcdhb17|93888|protocadherin beta 17	NM_053142|Pcdhb17|93888|protocadherin beta 17	AK077255|Pcdhb17|93888|protocadherin beta 17	AF326310|Pcdhb17|93888|protocadherin beta 17	AY013778|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr5_-_137521896_137522032	2.31021	SOX{8,9,10}.p2	AK002225|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	M62418|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	NM_007457|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	BC052692|Ap1s1|11769|adaptor protein complex AP-1, sigma 1
mm9_v1_chr13_+_31898501_31898514	2.30725	SOX{8,9,10}.p2	BC027689|Foxc1|17300|forkhead box C1	NM_008592|Foxc1|17300|forkhead box C1
mm9_v1_chr17_-_35840931_35841083	2.29395	SOX{8,9,10}.p2	L57509|Ddr1|12305|discoidin domain receptor family, member 1	AK143088|Ddr1|12305|discoidin domain receptor family, member 1	AK031442|Ddr1|12305|discoidin domain receptor family, member 1	NM_007584|Ddr1|12305|discoidin domain receptor family, member 1	NM_172962|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr9_-_110526866_110526924	2.29204	SOX{8,9,10}.p2	BC039808|Nradd|67169|neurotrophin receptor associated death domain	AK160222|Nradd|67169|neurotrophin receptor associated death domain	BC069856|Nradd|67169|neurotrophin receptor associated death domain	NM_026012|Nradd|67169|neurotrophin receptor associated death domain
mm9_v1_chr10_-_33816255_33816324	2.28957	SOX{8,9,10}.p2	AK161070|Fam26e|103511|family with sequence similarity 26, member E	AK052861|Fam26e|103511|family with sequence similarity 26, member E	AK078850|Fam26e|103511|family with sequence similarity 26, member E	BC025893|Fam26e|103511|family with sequence similarity 26, member E	AK085925|Fam26e|103511|family with sequence similarity 26, member E	NM_178908|Fam26e|103511|family with sequence similarity 26, member E
mm9_v1_chr7_+_80520360_80520429	2.28672	SOX{8,9,10}.p2	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr10_-_70055559_70055571	2.28356	SOX{8,9,10}.p2	NM_001162846|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK014946|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr19_+_7049639_7049662	2.27615	SOX{8,9,10}.p2	BC125654|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	BC125650|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm9_v1_chr13_-_96388378_96388387	2.27447	SOX{8,9,10}.p2	BC031516|F2r|14062|coagulation factor II (thrombin) receptor	NM_010169|F2r|14062|coagulation factor II (thrombin) receptor
mm9_v1_chr1_-_173957407_173957430	2.27119	SOX{8,9,10}.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr5_-_115750940_115750978	2.26959	SOX{8,9,10}.p2	AK002522|Dynll1|56455|dynein light chain LC8-type 1	AK010614|Dynll1|56455|dynein light chain LC8-type 1	AK010685|Dynll1|56455|dynein light chain LC8-type 1	AK013721|Dynll1|56455|dynein light chain LC8-type 1	AK013725|Dynll1|56455|dynein light chain LC8-type 1	AK082923|Dynll1|56455|dynein light chain LC8-type 1	AK147977|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr7_-_129164546_129164728	2.26909	SOX{8,9,10}.p2	AK187372|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK129280|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	BC062933|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK004632|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK154904|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK143691|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK159953|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK149798|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	NM_028758|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm9_v1_chr8_+_65430028_65430291	2.26229	SOX{8,9,10}.p2	AJ278998|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK049843|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK220280|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK013644|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC017601|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	NM_023689|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK164338|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC053334|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm9_v1_chr7_+_141862336_141862393	2.25401	SOX{8,9,10}.p2	AK163853|Dock1|330662|dedicator of cytokinesis 1	NM_001033420|Dock1|330662|dedicator of cytokinesis 1	AK147836|Dock1|330662|dedicator of cytokinesis 1	AK082835|Dock1|330662|dedicator of cytokinesis 1	AK141224|Dock1|330662|dedicator of cytokinesis 1	AK164963|Dock1|330662|dedicator of cytokinesis 1
mm9_v1_chr1_+_133737686_133737717	2.25349	SOX{8,9,10}.p2	BC037033|Slc41a1|98396|solute carrier family 41, member 1
mm9_v1_chr2_-_76820599_76820607	2.24968	SOX{8,9,10}.p2	AK084718|Ttn|22138|titin	AK052859|Ttn|22138|titin	AK084709|Ttn|22138|titin	AK085811|Ttn|22138|titin	AK085832|Ttn|22138|titin	NM_011652|Ttn|22138|titin	NM_028004|Ttn|22138|titin
mm9_v1_chr16_+_45094163_45094171	2.24636	SOX{8,9,10}.p2	AK132178|Ccdc80|67896|coiled-coil domain containing 80	NM_026439|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr5_-_134932407_134932628	2.24531	SOX{8,9,10}.p2	BC057091|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC058964|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF247161|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497637|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497638|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497639|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343348|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343351|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497640|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK078488|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343350|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497642|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343349|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497641|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK051310|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF260133|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030287|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030288|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030289|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF257475|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK147196|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC050822|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081462|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081463|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081464|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081466|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081467|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081468|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081469|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081470|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_020331|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1
mm9_v1_chr18_-_58369579_58369752	2.24512	SOX{8,9,10}.p2	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr2_+_22751003_22751041	2.24192	SOX{8,9,10}.p2	NM_019501|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr9_+_59504168_59504414	2.23948	SOX{8,9,10}.p2	AK151724|Pkm2|18746|pyruvate kinase, muscle	AK153483|Pkm2|18746|pyruvate kinase, muscle	AK171106|Pkm2|18746|pyruvate kinase, muscle	AK155655|Pkm2|18746|pyruvate kinase, muscle	AK170892|Pkm2|18746|pyruvate kinase, muscle	AK083076|Pkm2|18746|pyruvate kinase, muscle	AK135397|Pkm2|18746|pyruvate kinase, muscle	AK155110|Pkm2|18746|pyruvate kinase, muscle	AK168943|Pkm2|18746|pyruvate kinase, muscle	AK171023|Pkm2|18746|pyruvate kinase, muscle	AK171033|Pkm2|18746|pyruvate kinase, muscle	AK154695|Pkm2|18746|pyruvate kinase, muscle	AK169872|Pkm2|18746|pyruvate kinase, muscle	AK200951|Pkm2|18746|pyruvate kinase, muscle	BC016619|Pkm2|18746|pyruvate kinase, muscle	NM_011099|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr8_-_73919683_73919738	2.2352	SOX{8,9,10}.p2	BC026453|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK043798|Ushbp1|234395|Usher syndrome 1C binding protein 1	NM_181418|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK034939|Ushbp1|234395|Usher syndrome 1C binding protein 1
mm9_v1_chr15_-_36724008_36724060	2.22759	SOX{8,9,10}.p2	AK083368|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr4_+_8462756_8462764	2.22574	SOX{8,9,10}.p2	AK150030|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr6_+_29298117_29298193	2.22447	SOX{8,9,10}.p2	AK163674|Calu|12321|calumenin	NM_007594|Calu|12321|calumenin	NM_184053|Calu|12321|calumenin	AK035600|Calu|12321|calumenin	BC051423|Calu|12321|calumenin	AK032402|Calu|12321|calumenin	AK147756|Calu|12321|calumenin	AK160795|Calu|12321|calumenin	AK161807|Calu|12321|calumenin	AK166705|Calu|12321|calumenin	AK148178|Calu|12321|calumenin	AY225334|Calu|12321|calumenin	U81829|Calu|12321|calumenin	AK135295|Calu|12321|calumenin
mm9_v1_chr8_-_74009856_74009896	2.21197	SOX{8,9,10}.p2	BC027735|Ano8|382014|anoctamin 8
mm9_v1_chr5_-_115750998_115751012	2.19815	SOX{8,9,10}.p2	NM_019682|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr7_+_120350963_120350978	2.17825	SOX{8,9,10}.p2	AK146628|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	AK147145|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	NM_007489|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like
mm9_v1_chr11_+_101594342_101594372	2.17635	SOX{8,9,10}.p2	AK170616|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr2_-_156138199_156138439	2.16568	SOX{8,9,10}.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chr2_-_30758745_30758791	2.16272	SOX{8,9,10}.p2	AB035323|Ptges|64292|prostaglandin E synthase	BC024960|Ptges|64292|prostaglandin E synthase	AK172621|Ptges|64292|prostaglandin E synthase	AK010757|Ptges|64292|prostaglandin E synthase	AK033752|Ptges|64292|prostaglandin E synthase	AB041997|Ptges|64292|prostaglandin E synthase
mm9_v1_chr11_-_116704485_116704688	2.15937	SOX{8,9,10}.p2	EF527405|Jmjd6|107817|jumonji domain containing 6	BC006067|Jmjd6|107817|jumonji domain containing 6	BC011503|Jmjd6|107817|jumonji domain containing 6	AK122317|Jmjd6|107817|jumonji domain containing 6	AF304118|Jmjd6|107817|jumonji domain containing 6
mm9_v1_chr4_+_47220883_47221121	2.15463	SOX{8,9,10}.p2	NM_009928|Col15a1|12819|collagen, type XV, alpha 1	BC052428|Col15a1|12819|collagen, type XV, alpha 1	AF011450|Col15a1|12819|collagen, type XV, alpha 1	AK134030|Col15a1|12819|collagen, type XV, alpha 1
mm9_v1_chr6_-_118429289_118429292	2.14893	SOX{8,9,10}.p2	NM_011763|Zfp9|22750|zinc finger protein 9
mm9_v1_chr15_-_36723995_36724005	2.14713	SOX{8,9,10}.p2	BC050891|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr5_-_143667004_143667334	2.14118	SOX{8,9,10}.p2	AK218610|Actb|11461|actin, beta	AK206771|Actb|11461|actin, beta	AK208252|Actb|11461|actin, beta	AK202772|Actb|11461|actin, beta	M12481|Actb|11461|actin, beta	X03765|Actb|11461|actin, beta	EF095208|Actb|11461|actin, beta
mm9_v1_chr15_+_6336747_6336872	2.13925	SOX{8,9,10}.p2	NM_001037905|Dab2|13132|disabled homolog 2 (Drosophila)	NM_001102400|Dab2|13132|disabled homolog 2 (Drosophila)	NM_023118|Dab2|13132|disabled homolog 2 (Drosophila)	AK154716|Dab2|13132|disabled homolog 2 (Drosophila)	AK162744|Dab2|13132|disabled homolog 2 (Drosophila)	AK162851|Dab2|13132|disabled homolog 2 (Drosophila)	AK168375|Dab2|13132|disabled homolog 2 (Drosophila)	U18869|Dab2|13132|disabled homolog 2 (Drosophila)	AK165810|Dab2|13132|disabled homolog 2 (Drosophila)
mm9_v1_chr1_+_196765014_196765069	2.12235	SOX{8,9,10}.p2	NM_001111059|Cd34|12490|CD34 antigen	NM_133654|Cd34|12490|CD34 antigen
mm9_v1_chr4_+_8462766_8462804	2.1202	SOX{8,9,10}.p2	AK159607|Rab2a|59021|RAB2A, member RAS oncogene family	AK079071|Rab2a|59021|RAB2A, member RAS oncogene family	AK160333|Rab2a|59021|RAB2A, member RAS oncogene family	NM_021518|Rab2a|59021|RAB2A, member RAS oncogene family	BC058382|Rab2a|59021|RAB2A, member RAS oncogene family	X95403|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chrX_+_10173557_10173565	2.11946	SOX{8,9,10}.p2	
mm9_v1_chr1_-_88479034_88479140	2.11858	SOX{8,9,10}.p2	AF039216|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	BC005636|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	NM_008801|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	AK141209|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	AK170067|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta
mm9_v1_chr4_+_8462823_8462831	2.11407	SOX{8,9,10}.p2	AK042862|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr1_-_162142846_162143024	2.11367	SOX{8,9,10}.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr11_+_49607656_49607690	2.10875	SOX{8,9,10}.p2	NM_013529|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AK053670|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	BC031928|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AB016780|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2
mm9_v1_chr3_-_87831317_87831504	2.09982	SOX{8,9,10}.p2	BC138584|Hapln2|73940|hyaluronan and proteoglycan link protein 2	BC138585|Hapln2|73940|hyaluronan and proteoglycan link protein 2	AB049055|Hapln2|73940|hyaluronan and proteoglycan link protein 2	AK081264|Hapln2|73940|hyaluronan and proteoglycan link protein 2	NM_022031|Hapln2|73940|hyaluronan and proteoglycan link protein 2	BC023911|Hapln2|73940|hyaluronan and proteoglycan link protein 2
mm9_v1_chr3_+_34548916_34548976	2.09146	SOX{8,9,10}.p2	NM_011443|Sox2|20674|SRY-box containing gene 2	U31967|Sox2|20674|SRY-box containing gene 2
mm9_v1_chr8_-_87904870_87904876	2.08995	SOX{8,9,10}.p2	AK165216|Mylk3|213435|myosin light chain kinase 3
mm9_v1_chr2_-_180689380_180689413	2.08612	SOX{8,9,10}.p2	BC061107|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK021096|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_001141933|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_021426|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr12_+_83271002_83271165	2.08012	SOX{8,9,10}.p2	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr9_+_122832164_122832215	2.07601	SOX{8,9,10}.p2	AK147198|Zfp105|22646|zinc finger protein 105	BC052165|Zfp105|22646|zinc finger protein 105	NM_009544|Zfp105|22646|zinc finger protein 105	AF045565|Zfp105|22646|zinc finger protein 105
mm9_v1_chr5_+_54200903_54200980	2.07176	SOX{8,9,10}.p2	BC020138|Tbc1d19|67249|TBC1 domain family, member 19	AK012836|Tbc1d19|67249|TBC1 domain family, member 19	AK076128|Tbc1d19|67249|TBC1 domain family, member 19	AK177065|Tbc1d19|67249|TBC1 domain family, member 19
mm9_v1_chr6_+_35210429_35210433	2.06436	SOX{8,9,10}.p2	AK206324|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene
mm9_v1_chr3_+_19857053_19857266	2.05661	SOX{8,9,10}.p2	BC062957|Cp|12870|ceruloplasmin	NM_001042611|Cp|12870|ceruloplasmin	NM_007752|Cp|12870|ceruloplasmin	DQ336396|Cp|12870|ceruloplasmin	AK014835|Cp|12870|ceruloplasmin	AK043248|Cp|12870|ceruloplasmin	U49430|Cp|12870|ceruloplasmin	AK149523|Cp|12870|ceruloplasmin
mm9_v1_chr17_+_44215761_44215847	2.05639	SOX{8,9,10}.p2	NM_032003|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	NM_001168620|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AK032341|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AF233377|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC089320|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr5_-_115750913_115750938	2.05595	SOX{8,9,10}.p2	BC008106|Dynll1|56455|dynein light chain LC8-type 1	BC034258|Dynll1|56455|dynein light chain LC8-type 1	AF020185|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr13_+_94074449_94074449	2.0549	SOX{8,9,10}.p2	AF093257|Homer1|26556|homer homolog 1 (Drosophila)	NM_011982|Homer1|26556|homer homolog 1 (Drosophila)	NM_147176|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr3_+_66023884_66023904	2.05337	SOX{8,9,10}.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr13_+_23838602_23838602	2.05138	SOX{8,9,10}.p2	BC116853|Hist1h2bb|319178|histone cluster 1, H2bb	BC116857|Hist1h2bb|319178|histone cluster 1, H2bb	NM_175664|Hist1h2bb|319178|histone cluster 1, H2bb
mm9_v1_chr11_-_29147217_29147312	2.04422	SOX{8,9,10}.p2	BC005731|Ccdc104|216618|coiled-coil domain containing 104	AK075858|Ccdc104|216618|coiled-coil domain containing 104	NM_025740|Ccdc104|216618|coiled-coil domain containing 104	AK010468|Ccdc104|216618|coiled-coil domain containing 104	AK016479|Ccdc104|216618|coiled-coil domain containing 104
mm9_v1_chr4_+_13711928_13711928	2.02003	SOX{8,9,10}.p2	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr6_-_118429262_118429276	2.01918	SOX{8,9,10}.p2	AK007823|Zfp9|22750|zinc finger protein 9	AK029052|Zfp9|22750|zinc finger protein 9
mm9_v1_chr17_+_56219032_56219219	2.01812	SOX{8,9,10}.p2	AK144669|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	AK143616|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	D63850|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	NM_008233|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	AK146918|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	AK146813|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	BC003741|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2	FN687734|Hdgfrp2|15193|hepatoma-derived growth factor, related protein 2
mm9_v1_chr2_-_130985746_130985825	2.01491	SOX{8,9,10}.p2	AK003406|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	NM_026091|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	BC071212|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	AK006622|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene
mm9_v1_chr2_+_109533719_109533771	2.01099	SOX{8,9,10}.p2	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr14_-_70919701_70919955	2.01032	SOX{8,9,10}.p2	AK004995|Bmp1|12153|bone morphogenetic protein 1	L24755|Bmp1|12153|bone morphogenetic protein 1	BC053923|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr17_+_28829512_28829512	2.00807	SOX{8,9,10}.p2	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr5_+_27231234_27231317	2.00337	SOX{8,9,10}.p2	AK051708|Dpp6|13483|dipeptidylpeptidase 6	BC085154|Dpp6|13483|dipeptidylpeptidase 6	NM_001198886|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr11_-_43561446_43561512	2.00296	SOX{8,9,10}.p2	AK019021|Ttc1|66827|tetratricopeptide repeat domain 1	BC010236|Ttc1|66827|tetratricopeptide repeat domain 1	NM_133795|Ttc1|66827|tetratricopeptide repeat domain 1	AK166431|Ttc1|66827|tetratricopeptide repeat domain 1	AK170032|Ttc1|66827|tetratricopeptide repeat domain 1	AK170230|Ttc1|66827|tetratricopeptide repeat domain 1	AK077715|Ttc1|66827|tetratricopeptide repeat domain 1
mm9_v1_chr13_-_23677831_23677860	2.00276	SOX{8,9,10}.p2	BC069889|Hist1h2be|319179|histone cluster 1, H2be
mm9_v1_chr14_-_78936606_78936676	1.99992	SOX{8,9,10}.p2	NM_001164503|Akap11|219181|A kinase (PRKA) anchor protein 11
mm9_v1_chr5_-_136410393_136410481	1.99886	SOX{8,9,10}.p2	BC008129|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK088847|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AF058799|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AB073970|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK164356|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK076615|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK148618|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK153307|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr2_-_84662710_84662808	1.99861	SOX{8,9,10}.p2	AK003989|Smtnl1|68678|smoothelin-like 1	BC002317|Smtnl1|68678|smoothelin-like 1	NM_024230|Smtnl1|68678|smoothelin-like 1
mm9_v1_chr18_+_77303920_77303957	1.9964	SOX{8,9,10}.p2	AK029716|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164167|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164169|Pias2|17344|protein inhibitor of activated STAT 2	NM_008602|Pias2|17344|protein inhibitor of activated STAT 2	AK014871|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr3_+_88425073_88425232	1.99569	SOX{8,9,10}.p2	BC006589|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AB093254|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr4_+_43681807_43681971	1.98772	SOX{8,9,10}.p2	AK029713|Tmem8b|242409|transmembrane protein 8B	NM_001085508|Tmem8b|242409|transmembrane protein 8B	BC147569|Tmem8b|242409|transmembrane protein 8B	BC147574|Tmem8b|242409|transmembrane protein 8B	BC151067|Tmem8b|242409|transmembrane protein 8B	BC151070|Tmem8b|242409|transmembrane protein 8B
mm9_v1_chr19_+_10257363_10257524	1.98066	SOX{8,9,10}.p2	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr4_+_155266340_155266446	1.97953	SOX{8,9,10}.p2	BC098196|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC025556|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr1_+_154802198_154802230	1.9775	SOX{8,9,10}.p2	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr7_+_120657336_120657425	1.96664	SOX{8,9,10}.p2	AK005531|Far1|67420|fatty acyl CoA reductase 1	AK014405|Far1|67420|fatty acyl CoA reductase 1	AK011187|Far1|67420|fatty acyl CoA reductase 1	AK014486|Far1|67420|fatty acyl CoA reductase 1	NM_026143|Far1|67420|fatty acyl CoA reductase 1	NM_027379|Far1|67420|fatty acyl CoA reductase 1	BC007178|Far1|67420|fatty acyl CoA reductase 1	AK033674|Far1|67420|fatty acyl CoA reductase 1	AK030067|Far1|67420|fatty acyl CoA reductase 1
mm9_v1_chr7_-_135020290_135020344	1.96449	SOX{8,9,10}.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr6_+_37821110_37821130	1.96125	SOX{8,9,10}.p2	AB221637|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr8_-_67171805_67171871	1.9561	SOX{8,9,10}.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr15_+_43308745_43308829	1.95429	SOX{8,9,10}.p2	AK014989|Ttc35|66736|tetratricopeptide repeat domain 35	NM_025736|Ttc35|66736|tetratricopeptide repeat domain 35	AK015968|Ttc35|66736|tetratricopeptide repeat domain 35	BC004716|Ttc35|66736|tetratricopeptide repeat domain 35	AK172887|Ttc35|66736|tetratricopeptide repeat domain 35
mm9_v1_chr13_+_21845991_21845991	1.95427	SOX{8,9,10}.p2	NM_178201|Hist1h2bn|319187|histone cluster 1, H2bn
mm9_v1_chr8_-_49760037_49760043	1.95426	SOX{8,9,10}.p2	BC145284|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	AB025412|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_001145937|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_011857|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)
mm9_v1_chr8_+_32239179_32239274	1.95012	SOX{8,9,10}.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr3_+_89019126_89019154	1.93949	SOX{8,9,10}.p2	L04302|Thbs3|21827|thrombospondin 3	L24434|Thbs3|21827|thrombospondin 3	BC060104|Thbs3|21827|thrombospondin 3	BC053023|Thbs3|21827|thrombospondin 3
mm9_v1_chr17_-_56615861_56615871	1.93822	SOX{8,9,10}.p2	BC083188|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	AK163915|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr11_-_109472694_109472694	1.93615	SOX{8,9,10}.p2	BC025560|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr9_+_92437056_92437289	1.92993	SOX{8,9,10}.p2	AK046364|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	NM_001142916|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	NM_011961|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK033363|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK157207|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK042433|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	BC021352|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AF080572|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr9_+_65738129_65738143	1.92332	SOX{8,9,10}.p2	AK011090|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	NM_026515|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr8_-_4325051_4325113	1.91113	SOX{8,9,10}.p2	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr3_+_13471681_13471721	1.90929	SOX{8,9,10}.p2	AK079659|Ralyl|76897|RALY RNA binding protein-like	AK032086|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr3_+_66023808_66023844	1.90469	SOX{8,9,10}.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr15_+_78744576_78744597	1.90059	SOX{8,9,10}.p2	BC069982|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr16_-_31314534_31314685	1.89819	SOX{8,9,10}.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr9_+_21903696_21903696	1.89779	SOX{8,9,10}.p2	NM_009922|Cnn1|12797|calponin 1
mm9_v1_chr6_+_4484651_4484672	1.89053	SOX{8,9,10}.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr8_+_73051625_73051647	1.87948	SOX{8,9,10}.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr11_-_100831819_100831899	1.87725	SOX{8,9,10}.p2	AK154132|Ptrf|19285|polymerase I and transcript release factor	BC116701|Ptrf|19285|polymerase I and transcript release factor	BC117527|Ptrf|19285|polymerase I and transcript release factor	AF036249|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr11_+_69209261_69209338	1.87675	SOX{8,9,10}.p2	AK018782|Lsmd1|78304|LSM domain containing 1	NM_030083|Lsmd1|78304|LSM domain containing 1	BC048499|Lsmd1|78304|LSM domain containing 1	BC062267|Lsmd1|78304|LSM domain containing 1	BC038659|Lsmd1|78304|LSM domain containing 1
mm9_v1_chr4_+_114285302_114285518	1.87424	SOX{8,9,10}.p2	AK040809|Gm12824|666048|predicted gene 12824	BC038617|Gm12824|666048|predicted gene 12824
mm9_v1_chr11_-_102308966_102308985	1.874	SOX{8,9,10}.p2	NM_199200|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr12_-_112910475_112910550	1.87014	SOX{8,9,10}.p2	BC106109|Ckb|12709|creatine kinase, brain	BC015271|Ckb|12709|creatine kinase, brain	AK014299|Ckb|12709|creatine kinase, brain	BC058257|Ckb|12709|creatine kinase, brain	AK148885|Ckb|12709|creatine kinase, brain	AK152388|Ckb|12709|creatine kinase, brain	AK153484|Ckb|12709|creatine kinase, brain	AK161990|Ckb|12709|creatine kinase, brain	AK002467|Ckb|12709|creatine kinase, brain	AK165779|Ckb|12709|creatine kinase, brain	AK166980|Ckb|12709|creatine kinase, brain	AK167034|Ckb|12709|creatine kinase, brain	NM_021273|Ckb|12709|creatine kinase, brain
mm9_v1_chr10_-_95026390_95026668	1.86217	SOX{8,9,10}.p2	CT010342|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK211623|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK216782|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	BC027209|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr8_+_109417539_109417610	1.85147	SOX{8,9,10}.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr14_-_8491067_8491129	1.85022	SOX{8,9,10}.p2	AK049619|Gm2897|100040671|predicted gene 2897
mm9_v1_chr4_-_129012546_129012617	1.83655	SOX{8,9,10}.p2	U35141|Rbbp4|19646|retinoblastoma binding protein 4	AK166437|Rbbp4|19646|retinoblastoma binding protein 4	AK082419|Rbbp4|19646|retinoblastoma binding protein 4	BC138568|Rbbp4|19646|retinoblastoma binding protein 4	BC138570|Rbbp4|19646|retinoblastoma binding protein 4	NM_009030|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr16_+_31664022_31664124	1.83476	SOX{8,9,10}.p2	AK220189|Dlg1|13383|discs, large homolog 1 (Drosophila)	BC057118|Dlg1|13383|discs, large homolog 1 (Drosophila)	NM_007862|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr2_+_22751081_22751226	1.83126	SOX{8,9,10}.p2	AK012307|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	AB210841|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC026820|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107274|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107273|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr2_+_121115337_121115465	1.82933	SOX{8,9,10}.p2	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr15_-_84388113_84388233	1.82591	SOX{8,9,10}.p2	AK083881|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr8_+_4325209_4325236	1.8236	SOX{8,9,10}.p2	AK132700|Ccl25|20300|chemokine (C-C motif) ligand 25	AK043043|Ccl25|20300|chemokine (C-C motif) ligand 25	AK154211|Ccl25|20300|chemokine (C-C motif) ligand 25	AK038019|Ccl25|20300|chemokine (C-C motif) ligand 25	AK086889|Ccl25|20300|chemokine (C-C motif) ligand 25
mm9_v1_chr11_-_102786403_102786422	1.81727	SOX{8,9,10}.p2	AK156592|Kif18b|70218|kinesin family member 18B	BC057614|Kif18b|70218|kinesin family member 18B
mm9_v1_chr14_+_66963139_66963219	1.81688	SOX{8,9,10}.p2	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr11_-_6344354_6344443	1.81094	SOX{8,9,10}.p2	BC028539|H2afv|77605|H2A histone family, member V	AK021267|H2afv|77605|H2A histone family, member V	AK168110|H2afv|77605|H2A histone family, member V	BC147293|H2afv|77605|H2A histone family, member V	BC147294|H2afv|77605|H2A histone family, member V	BC147741|H2afv|77605|H2A histone family, member V	BC147751|H2afv|77605|H2A histone family, member V
mm9_v1_chr17_-_33897262_33897301	1.80996	SOX{8,9,10}.p2	AK146452|Rab11b|19326|RAB11B, member RAS oncogene family	AK148022|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr2_+_30219837_30219854	1.80874	SOX{8,9,10}.p2	BC051404|Fam73b|108958|family with sequence similarity 73, member B	NM_175392|Fam73b|108958|family with sequence similarity 73, member B
mm9_v1_chr11_+_69660172_69660183	1.80295	SOX{8,9,10}.p2	AK029154|Plscr3|70310|phospholipid scramblase 3	BC020143|Plscr3|70310|phospholipid scramblase 3
mm9_v1_chr2_-_80287218_80287228	1.79147	SOX{8,9,10}.p2	AK019093|Frzb|20378|frizzled-related protein
mm9_v1_chr13_+_88961034_88961117	1.79138	SOX{8,9,10}.p2	AF031525|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK046885|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_001037987|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_010103|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK157810|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK141907|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK135220|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK139093|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK036117|Edil3|13612|EGF-like repeats and discoidin I-like domains 3
mm9_v1_chr1_-_166387998_166388161	1.78941	SOX{8,9,10}.p2	X16646|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC094070|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC027319|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK005071|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK140862|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK160405|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK161891|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr6_+_128325473_128325533	1.78604	SOX{8,9,10}.p2	AK016804|4933413G19Rik|71149|RIKEN cDNA 4933413G19 gene	AK187908|Foxm1|14235|forkhead box M1	AK161342|4933413G19Rik|71149|RIKEN cDNA 4933413G19 gene	NM_027697|4933413G19Rik|71149|RIKEN cDNA 4933413G19 gene	AK218223|Foxm1|14235|forkhead box M1
mm9_v1_chr17_+_29230715_29230763	1.78446	SOX{8,9,10}.p2	AK139306|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK149910|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK170467|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	NM_007669|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK007630|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK089093|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	U24173|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	BC002043|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr13_-_108948762_108948841	1.78098	SOX{8,9,10}.p2	AB183434|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AY262012|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC048512|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK166492|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC116975|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC116977|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC144716|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK007894|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK080810|B230220B15Rik|320723|RIKEN cDNA B230220B15 gene	NM_001127346|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2
mm9_v1_chr11_+_20124648_20124793	1.76886	SOX{8,9,10}.p2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr4_+_59048027_59048124	1.76558	SOX{8,9,10}.p2	NM_025277|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK014158|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC023670|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK003187|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC055434|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC061090|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10
mm9_v1_chr14_-_52935887_52935914	1.76379	SOX{8,9,10}.p2	AK077601|Sall2|50524|sal-like 2 (Drosophila)
mm9_v1_chr11_+_101594269_101594313	1.75725	SOX{8,9,10}.p2	AK153829|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	NM_144831|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	BC132445|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	AK220485|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr6_-_52108249_52108315	1.75578	SOX{8,9,10}.p2	BC138097|Hoxa1|15394|homeobox A1	BC138098|Hoxa1|15394|homeobox A1	M22115|Hoxa1|15394|homeobox A1	AK143943|Hoxa1|15394|homeobox A1	AK083575|Hoxa1|15394|homeobox A1	NM_010449|Hoxa1|15394|homeobox A1
mm9_v1_chr9_-_97011440_97011575	1.75552	SOX{8,9,10}.p2	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr4_+_103236110_103236164	1.74986	SOX{8,9,10}.p2	
mm9_v1_chr2_+_181498036_181498036	1.74414	SOX{8,9,10}.p2	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr6_-_128305798_128305874	1.73863	SOX{8,9,10}.p2	BC060068|Tulp3|22158|tubby-like protein 3	AB016963|Tulp3|22158|tubby-like protein 3	AF045582|Tulp3|22158|tubby-like protein 3	AK035363|Tulp3|22158|tubby-like protein 3	AK009482|Tulp3|22158|tubby-like protein 3	AK142527|Tulp3|22158|tubby-like protein 3	NM_011657|Tulp3|22158|tubby-like protein 3
mm9_v1_chr11_-_72028494_72028582	1.7368	SOX{8,9,10}.p2	AK005655|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)	AK013990|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)	AK045566|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm9_v1_chr12_-_84938095_84938119	1.73157	SOX{8,9,10}.p2	AK170954|Zfyve1|217695|zinc finger, FYVE domain containing 1	NM_183154|Zfyve1|217695|zinc finger, FYVE domain containing 1	AK139825|Zfyve1|217695|zinc finger, FYVE domain containing 1
mm9_v1_chr9_-_60535841_60535940	1.73119	SOX{8,9,10}.p2	AK085022|Lrrc49|102747|leucine rich repeat containing 49	NM_001146046|Lrrc49|102747|leucine rich repeat containing 49	NM_145616|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr4_+_11118500_11118500	1.7301	SOX{8,9,10}.p2	NM_001037134|Ccne2|12448|cyclin E2
mm9_v1_chr9_-_79607490_79607521	1.72592	SOX{8,9,10}.p2	X58486|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	BC010979|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	AK019210|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	AK011269|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2
mm9_v1_chr11_+_70471347_70471375	1.72011	SOX{8,9,10}.p2	CT010193|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr19_-_41151561_41151602	1.71681	SOX{8,9,10}.p2	BC060980|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	AK140031|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	NM_153520|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein
mm9_v1_chr8_+_47576483_47576510	1.71458	SOX{8,9,10}.p2	AK161189|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr10_-_81007727_81007945	1.71373	SOX{8,9,10}.p2	M55411|Gna11|14672|guanine nucleotide binding protein, alpha 11	BC011169|Gna11|14672|guanine nucleotide binding protein, alpha 11	AK143685|Gna11|14672|guanine nucleotide binding protein, alpha 11	NM_010301|Gna11|14672|guanine nucleotide binding protein, alpha 11
mm9_v1_chr18_-_64676090_64676141	1.71264	SOX{8,9,10}.p2	BC005473|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr7_-_106494110_106494153	1.71248	SOX{8,9,10}.p2	
mm9_v1_chr3_+_136566015_136566156	1.7061	SOX{8,9,10}.p2	AK076570|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr17_+_25864655_25864695	1.70359	SOX{8,9,10}.p2	AK009926|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	AK049334|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	NM_028009|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr8_+_4166521_4166600	1.70153	SOX{8,9,10}.p2	AK045240|Evi5l|213027|ecotropic viral integration site 5 like	AK087482|Evi5l|213027|ecotropic viral integration site 5 like	NM_001039578|Evi5l|213027|ecotropic viral integration site 5 like	AK134074|Evi5l|213027|ecotropic viral integration site 5 like	BC042653|Evi5l|213027|ecotropic viral integration site 5 like
mm9_v1_chr2_+_177876710_177876721	1.69816	SOX{8,9,10}.p2	BC058621|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr18_+_37663917_37664076	1.69786	SOX{8,9,10}.p2	AK045399|Pcdhb20|93891|protocadherin beta 20	NM_053145|Pcdhb20|93891|protocadherin beta 20	AK046137|Pcdhb20|93891|protocadherin beta 20	AF326313|Pcdhb20|93891|protocadherin beta 20	AK045527|Pcdhb20|93891|protocadherin beta 20	BC031895|Pcdhb20|93891|protocadherin beta 20	AY013782|Pcdhb20|93891|protocadherin beta 20
mm9_v1_chr7_-_29096957_29097119	1.69722	SOX{8,9,10}.p2	AK010832|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC010303|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AY551342|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK088074|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK012977|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC037056|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008340|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008382|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	NM_025616|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK167473|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)
mm9_v1_chr16_-_57754816_57754849	1.69283	SOX{8,9,10}.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr11_+_60513191_60513346	1.69282	SOX{8,9,10}.p2	NM_001159404|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	NM_001159405|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	NM_008502|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	BC055399|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	AK159412|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	D16141|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)	BC050913|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)
mm9_v1_chr9_+_31923720_31923720	1.68554	SOX{8,9,10}.p2	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr11_+_70471297_70471326	1.68067	SOX{8,9,10}.p2	BC013460|Eno3|13808|enolase 3, beta muscle	NM_007933|Eno3|13808|enolase 3, beta muscle	X62667|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr8_-_23704176_23704284	1.67643	SOX{8,9,10}.p2	BC004743|Vdac3|22335|voltage-dependent anion channel 3	BC089336|Vdac3|22335|voltage-dependent anion channel 3	AK161283|Vdac3|22335|voltage-dependent anion channel 3	AK083785|Vdac3|22335|voltage-dependent anion channel 3	AK150828|Vdac3|22335|voltage-dependent anion channel 3	AK169228|Vdac3|22335|voltage-dependent anion channel 3	AK150741|Vdac3|22335|voltage-dependent anion channel 3	AK159431|Vdac3|22335|voltage-dependent anion channel 3	AK167781|Vdac3|22335|voltage-dependent anion channel 3	AK168815|Vdac3|22335|voltage-dependent anion channel 3	U30839|Vdac3|22335|voltage-dependent anion channel 3	AK002296|Vdac3|22335|voltage-dependent anion channel 3	AK146957|Vdac3|22335|voltage-dependent anion channel 3	AK169099|Vdac3|22335|voltage-dependent anion channel 3	NM_001198998|Vdac3|22335|voltage-dependent anion channel 3	NM_011696|Vdac3|22335|voltage-dependent anion channel 3
mm9_v1_chr16_+_20535519_20535657	1.67133	SOX{8,9,10}.p2	AK146517|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK168414|Ap2m1|11773|adaptor protein complex AP-2, mu1	NM_009679|Ap2m1|11773|adaptor protein complex AP-2, mu1	U27106|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK159534|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC056352|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK150358|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC089342|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC094510|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK143586|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK141862|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK172889|Ap2m1|11773|adaptor protein complex AP-2, mu1
mm9_v1_chr7_+_120351012_120351092	1.66933	SOX{8,9,10}.p2	BC011080|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	AK143267|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	AB014494|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like
mm9_v1_chr2_-_62411970_62412077	1.66764	SOX{8,9,10}.p2	BC019190|Fap|14089|fibroblast activation protein	AK051959|Fap|14089|fibroblast activation protein	NM_007986|Fap|14089|fibroblast activation protein	Y10007|Fap|14089|fibroblast activation protein
mm9_v1_chrX_-_100381973_100382006	1.66742	SOX{8,9,10}.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr1_+_196765079_196765114	1.66327	SOX{8,9,10}.p2	AK044121|Cd34|12490|CD34 antigen	AK053874|Cd34|12490|CD34 antigen	AK051507|Cd34|12490|CD34 antigen	AK167329|Cd34|12490|CD34 antigen	AK167350|Cd34|12490|CD34 antigen	BC006607|Cd34|12490|CD34 antigen	AK089010|Cd34|12490|CD34 antigen
mm9_v1_chr14_+_47380215_47380264	1.663	SOX{8,9,10}.p2	NM_028222|Cdkn3|72391|cyclin-dependent kinase inhibitor 3	BC049694|Cdkn3|72391|cyclin-dependent kinase inhibitor 3	AK033341|Cdkn3|72391|cyclin-dependent kinase inhibitor 3	AK010426|Cdkn3|72391|cyclin-dependent kinase inhibitor 3
mm9_v1_chr2_-_32136262_32136304	1.6617	SOX{8,9,10}.p2	
mm9_v1_chrX_-_163647057_163647080	1.65868	SOX{8,9,10}.p2	BC018286|Tmsb4x|19241|thymosin, beta 4, X chromosome	X16053|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr15_-_77426500_77426554	1.65745	SOX{8,9,10}.p2	BC147348|Apol10b|328561|apolipoprotein L 10b	BC147349|Apol10b|328561|apolipoprotein L 10b	AK033678|Apol10b|328561|apolipoprotein L 10b	AK144113|Apol10b|328561|apolipoprotein L 10b	NM_177820|Apol10b|328561|apolipoprotein L 10b
mm9_v1_chr8_-_87461251_87461273	1.65519	SOX{8,9,10}.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr7_+_52690164_52690415	1.65384	SOX{8,9,10}.p2	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr6_+_54987993_54988082	1.64808	SOX{8,9,10}.p2	NM_180678|Gars|353172|glycyl-tRNA synthetase	AK012758|Gars|353172|glycyl-tRNA synthetase	BC021747|Gars|353172|glycyl-tRNA synthetase	AK146238|Gars|353172|glycyl-tRNA synthetase	AK165857|Gars|353172|glycyl-tRNA synthetase
mm9_v1_chr10_-_70747929_70748034	1.64805	SOX{8,9,10}.p2	AK144468|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK043167|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	BC019464|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK148364|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	NM_145420|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)
mm9_v1_chr3_+_28680248_28680315	1.64623	SOX{8,9,10}.p2	AK052412|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106843|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106844|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK082214|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr17_-_33897193_33897231	1.6461	SOX{8,9,10}.p2	AB232606|Rab11b|19326|RAB11B, member RAS oncogene family	AK146978|Rab11b|19326|RAB11B, member RAS oncogene family	AK148106|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr2_+_18594027_18594125	1.64339	SOX{8,9,10}.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr8_+_87162885_87162891	1.64307	SOX{8,9,10}.p2	AK132071|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr10_-_52265544_52265544	1.63572	SOX{8,9,10}.p2	AK029509|Zfa|22639|zinc finger protein, autosomal	NM_009540|Zfa|22639|zinc finger protein, autosomal
mm9_v1_chr10_-_93498449_93498481	1.63412	SOX{8,9,10}.p2	AY753561|Vezt|215008|vezatin, adherens junctions transmembrane protein	AY753562|Vezt|215008|vezatin, adherens junctions transmembrane protein	DQ025533|Vezt|215008|vezatin, adherens junctions transmembrane protein	BC056428|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr8_+_106625524_106625609	1.61984	SOX{8,9,10}.p2	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr19_+_37281988_37282110	1.61371	SOX{8,9,10}.p2	AK009364|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164336|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164337|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_027314|March5|69104|membrane-associated ring finger (C3HC4) 5	AK009232|March5|69104|membrane-associated ring finger (C3HC4) 5	AK021403|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr18_+_77303959_77304054	1.60967	SOX{8,9,10}.p2	AK078813|Pias2|17344|protein inhibitor of activated STAT 2	AK149142|Pias2|17344|protein inhibitor of activated STAT 2	AK086653|Pias2|17344|protein inhibitor of activated STAT 2	AF201391|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr12_+_60167873_60167985	1.60507	SOX{8,9,10}.p2	NM_008891|Pnn|18949|pinin	AK051640|Pnn|18949|pinin	AK009055|Pnn|18949|pinin	AK085295|Pnn|18949|pinin	AK050669|Pnn|18949|pinin	AK157587|Pnn|18949|pinin	AK028219|Pnn|18949|pinin	AK161109|Pnn|18949|pinin	AK160616|Pnn|18949|pinin	BC132571|Pnn|18949|pinin	BC138014|Pnn|18949|pinin	Y08701|Pnn|18949|pinin	AK030978|Pnn|18949|pinin
mm9_v1_chr7_-_53069599_53069692	1.60365	SOX{8,9,10}.p2	BC004662|Cyth2|19158|cytohesin 2	AB013466|Cyth2|19158|cytohesin 2	AK168979|Cyth2|19158|cytohesin 2	AK143829|Cyth2|19158|cytohesin 2	AK172050|Cyth2|19158|cytohesin 2	AF079971|Cyth2|19158|cytohesin 2	AK045451|Cyth2|19158|cytohesin 2	BC088833|Cyth2|19158|cytohesin 2	AK078067|Cyth2|19158|cytohesin 2	NM_001112701|Cyth2|19158|cytohesin 2	NM_011181|Cyth2|19158|cytohesin 2
mm9_v1_chr15_-_98637560_98637620	1.59725	SOX{8,9,10}.p2	AK164154|Ddn|13199|dendrin
mm9_v1_chr17_-_24781872_24781901	1.58907	SOX{8,9,10}.p2	BC065778|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK002557|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023449|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr16_-_45844343_45844346	1.58845	SOX{8,9,10}.p2	AK049595|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	BC050915|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	BC060683|Phldb2|208177|pleckstrin homology-like domain, family B, member 2
mm9_v1_chr1_+_196765124_196765159	1.5853	SOX{8,9,10}.p2	S69293|Cd34|12490|CD34 antigen	BC066820|Cd34|12490|CD34 antigen	AK158452|Cd34|12490|CD34 antigen	S69299|Cd34|12490|CD34 antigen	S69301|Cd34|12490|CD34 antigen
mm9_v1_chr9_+_95538038_95538059	1.58347	SOX{8,9,10}.p2	AK010249|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	NM_029620|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr10_-_61802889_61803289	1.58222	SOX{8,9,10}.p2	AK167468|Hk1|15275|hexokinase 1	AK143630|Hk1|15275|hexokinase 1	NM_001146100|Hk1|15275|hexokinase 1	BC072628|Hk1|15275|hexokinase 1
mm9_v1_chr19_+_10978153_10978193	1.57829	SOX{8,9,10}.p2	AK206563|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	AK214592|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
mm9_v1_chr10_-_79850388_79850445	1.57587	SOX{8,9,10}.p2	NM_198615|Mex3d|237400|mex3 homolog D (C. elegans)
mm9_v1_chr3_-_143868210_143868237	1.56953	SOX{8,9,10}.p2	NM_010723|Lmo4|16911|LIM domain only 4
mm9_v1_chr14_-_80171003_80171120	1.56825	SOX{8,9,10}.p2	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chrX_+_156146532_156146595	1.56806	SOX{8,9,10}.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr1_+_174271397_174271531	1.56593	SOX{8,9,10}.p2	BC099932|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AK044640|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AB039879|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	BC141088|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AF322631|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr4_+_11118855_11118930	1.56512	SOX{8,9,10}.p2	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr8_+_73051648_73051650	1.56457	SOX{8,9,10}.p2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr9_-_112090150_112090479	1.56191	SOX{8,9,10}.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr11_+_75300278_75300323	1.56074	SOX{8,9,10}.p2	NM_138659|Prpf8|192159|pre-mRNA processing factor 8	AK041017|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr13_+_31898612_31898654	1.55881	SOX{8,9,10}.p2	AK144420|Foxc1|17300|forkhead box C1
mm9_v1_chr11_-_116704762_116704824	1.55767	SOX{8,9,10}.p2	BC056629|Jmjd6|107817|jumonji domain containing 6	EF527404|Jmjd6|107817|jumonji domain containing 6	NM_033398|Jmjd6|107817|jumonji domain containing 6
mm9_v1_chr1_+_160292470_160292548	1.55672	SOX{8,9,10}.p2	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr6_-_125236045_125236060	1.55607	SOX{8,9,10}.p2	BC050770|Tuba3a|22144|tubulin, alpha 3A	BC089547|Tuba3a|22144|tubulin, alpha 3A	M13442|Tuba3a|22144|tubulin, alpha 3A	AK132775|Tuba3a|22144|tubulin, alpha 3A	NM_009446|Tuba3a|22144|tubulin, alpha 3A
mm9_v1_chr4_+_118781405_118781458	1.55202	SOX{8,9,10}.p2	AK155252|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170425|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK089353|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170873|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M22998|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr7_+_149684731_149684776	1.55135	SOX{8,9,10}.p2	L49466|Tnnt3|21957|troponin T3, skeletal, fast	L49467|Tnnt3|21957|troponin T3, skeletal, fast	L49468|Tnnt3|21957|troponin T3, skeletal, fast	L49469|Tnnt3|21957|troponin T3, skeletal, fast	L49470|Tnnt3|21957|troponin T3, skeletal, fast	L49471|Tnnt3|21957|troponin T3, skeletal, fast	L49472|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163664|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163665|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163666|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163667|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163668|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163669|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163670|Tnnt3|21957|troponin T3, skeletal, fast	NM_011620|Tnnt3|21957|troponin T3, skeletal, fast	U77779|Tnnt3|21957|troponin T3, skeletal, fast	BC003747|Tnnt3|21957|troponin T3, skeletal, fast	AK003147|Tnnt3|21957|troponin T3, skeletal, fast
mm9_v1_chr2_+_74536030_74536036	1.54698	SOX{8,9,10}.p2	AK134427|Hoxd9|15438|homeobox D9
mm9_v1_chr3_-_75073981_75073999	1.5419	SOX{8,9,10}.p2	AF251276|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK007347|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK008931|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	NM_026460|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm9_v1_chr10_+_79516232_79516445	1.53999	SOX{8,9,10}.p2	D87896|Gpx4|625249|glutathione peroxidase 4	NM_008162|Gpx4|625249|glutathione peroxidase 4	AF045768|Gpx4|625249|glutathione peroxidase 4	AK167881|Gpx4|625249|glutathione peroxidase 4	AK006441|Gpx4|625249|glutathione peroxidase 4	AK160389|Gpx4|625249|glutathione peroxidase 4	AK168027|Gpx4|625249|glutathione peroxidase 4	AF045769|Gpx4|625249|glutathione peroxidase 4	AK160509|Gpx4|625249|glutathione peroxidase 4	BC083137|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chr16_-_91647153_91647201	1.53641	SOX{8,9,10}.p2	AK146478|Gart|14450|phosphoribosylglycinamide formyltransferase	BC070465|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168876|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168445|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168864|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168458|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168501|Gart|14450|phosphoribosylglycinamide formyltransferase	U01023|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168724|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168796|Gart|14450|phosphoribosylglycinamide formyltransferase	AK146355|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr13_+_88961161_88961261	1.53553	SOX{8,9,10}.p2	AK045839|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK084810|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	BC056386|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK044978|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK084215|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK081003|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK045088|Edil3|13612|EGF-like repeats and discoidin I-like domains 3
mm9_v1_chr9_-_79607524_79607659	1.53271	SOX{8,9,10}.p2	AF037371|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	AK007875|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	AK153173|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2	NM_009945|Cox7a2|12866|cytochrome c oxidase, subunit VIIa 2
mm9_v1_chr10_-_36855292_36855411	1.52799	SOX{8,9,10}.p2	AK082623|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK136452|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr7_+_30023368_30023534	1.5279	SOX{8,9,10}.p2	AK020444|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr13_+_9275741_9275783	1.52767	SOX{8,9,10}.p2	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr15_-_96850752_96850787	1.52713	SOX{8,9,10}.p2	BC031717|Slc38a4|69354|solute carrier family 38, member 4	AY027919|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr7_-_51562263_51562328	1.52575	SOX{8,9,10}.p2	AB009245|Clec11a|20256|C-type lectin domain family 11, member a	BC002001|Clec11a|20256|C-type lectin domain family 11, member a	NM_009131|Clec11a|20256|C-type lectin domain family 11, member a
mm9_v1_chr9_+_59504417_59504440	1.52574	SOX{8,9,10}.p2	BC094663|Pkm2|18746|pyruvate kinase, muscle	D38379|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr2_+_32006651_32006708	1.5184	SOX{8,9,10}.p2	AK147271|Prrc2b|227723|proline-rich coiled-coil 2B	AK147677|Prrc2b|227723|proline-rich coiled-coil 2B	NM_001159634|Prrc2b|227723|proline-rich coiled-coil 2B	NM_172661|Prrc2b|227723|proline-rich coiled-coil 2B	BC055116|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr10_-_83996516_83996534	1.51736	SOX{8,9,10}.p2	AK030708|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr18_+_42671147_42671160	1.51404	SOX{8,9,10}.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr10_-_60609031_60609082	1.51238	SOX{8,9,10}.p2	CT010214|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr13_-_74480876_74480941	1.50972	SOX{8,9,10}.p2	AF095938|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	DQ402975|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK216171|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK209906|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK215982|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr4_-_70195952_70195978	1.50945	SOX{8,9,10}.p2	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr8_-_88063071_88063191	1.50921	SOX{8,9,10}.p2	
mm9_v1_chr2_-_174289569_174289618	1.50564	SOX{8,9,10}.p2	BC024339|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AY341882|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK160387|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK007752|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK007809|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK012444|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK010661|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	NM_025983|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm9_v1_chr4_-_108311676_108311740	1.50527	SOX{8,9,10}.p2	
mm9_v1_chr2_-_103637714_103637791	1.50153	SOX{8,9,10}.p2	AK133891|Caprin1|53872|cell cycle associated protein 1	AK170830|Caprin1|53872|cell cycle associated protein 1	AK147514|Caprin1|53872|cell cycle associated protein 1	BC052427|Caprin1|53872|cell cycle associated protein 1	AK157707|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr14_-_109313298_109313300	1.49488	SOX{8,9,10}.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr13_-_55614750_55614802	1.49018	SOX{8,9,10}.p2	AK003019|Pdlim7|67399|PDZ and LIM domain 7	BC052698|Pdlim7|67399|PDZ and LIM domain 7	AK142933|Pdlim7|67399|PDZ and LIM domain 7	AK003338|Pdlim7|67399|PDZ and LIM domain 7	AK010141|Pdlim7|67399|PDZ and LIM domain 7	AK128987|Pdlim7|67399|PDZ and LIM domain 7	BC049565|Pdlim7|67399|PDZ and LIM domain 7	AK010339|Pdlim7|67399|PDZ and LIM domain 7	AK033091|Pdlim7|67399|PDZ and LIM domain 7	AK049902|Pdlim7|67399|PDZ and LIM domain 7	AK077998|Pdlim7|67399|PDZ and LIM domain 7	AK167476|Pdlim7|67399|PDZ and LIM domain 7	NM_001114087|Pdlim7|67399|PDZ and LIM domain 7	NM_001114088|Pdlim7|67399|PDZ and LIM domain 7	NM_026131|Pdlim7|67399|PDZ and LIM domain 7
mm9_v1_chr11_-_102786433_102786439	1.48618	SOX{8,9,10}.p2	NM_197959|Kif18b|70218|kinesin family member 18B
mm9_v1_chr2_-_103637795_103637829	1.48313	SOX{8,9,10}.p2	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr5_-_115750649_115750671	1.47416	SOX{8,9,10}.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr4_-_134260127_134260247	1.47388	SOX{8,9,10}.p2	AK144486|Man1c1|230815|mannosidase, alpha, class 1C, member 1	BC067023|Man1c1|230815|mannosidase, alpha, class 1C, member 1	NM_207237|Man1c1|230815|mannosidase, alpha, class 1C, member 1
mm9_v1_chr11_+_59476181_59476356	1.47005	SOX{8,9,10}.p2	AK155630|Mprip|26936|myosin phosphatase Rho interacting protein	AK044512|Mprip|26936|myosin phosphatase Rho interacting protein	BC049803|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr15_-_84387921_84388066	1.46821	SOX{8,9,10}.p2	BC058638|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr7_-_4704436_4704695	1.46375	SOX{8,9,10}.p2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chr12_-_112951127_112951165	1.46128	SOX{8,9,10}.p2	AK160246|Bag5|70369|BCL2-associated athanogene 5
mm9_v1_chr9_-_108480927_108481054	1.45975	SOX{8,9,10}.p2	BC054367|Wdr6|83669|WD repeat domain 6	AK163752|Wdr6|83669|WD repeat domain 6	AK052235|Wdr6|83669|WD repeat domain 6	AK146617|Wdr6|83669|WD repeat domain 6	AK165935|Wdr6|83669|WD repeat domain 6	AK046119|Wdr6|83669|WD repeat domain 6	AK037181|Wdr6|83669|WD repeat domain 6	AK166265|Wdr6|83669|WD repeat domain 6	AF348591|Wdr6|83669|WD repeat domain 6	BC050894|Wdr6|83669|WD repeat domain 6	NM_031392|Wdr6|83669|WD repeat domain 6	AK169357|Wdr6|83669|WD repeat domain 6
mm9_v1_chr5_+_13399492_13399661	1.4546	SOX{8,9,10}.p2	AK053115|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	BC057588|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr14_-_109313333_109313374	1.45203	SOX{8,9,10}.p2	AK173296|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr1_-_58561631_58561830	1.45053	SOX{8,9,10}.p2	BC015257|Orc2|18393|origin recognition complex, subunit 2	NM_008765|Orc2|18393|origin recognition complex, subunit 2	U27457|Orc2|18393|origin recognition complex, subunit 2	AK048408|Orc2|18393|origin recognition complex, subunit 2	AK133604|Orc2|18393|origin recognition complex, subunit 2	AK146281|Orc2|18393|origin recognition complex, subunit 2	AK146859|Orc2|18393|origin recognition complex, subunit 2	AK051747|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr6_+_88415396_88415624	1.45013	SOX{8,9,10}.p2	NM_019685|Ruvbl1|56505|RuvB-like protein 1	AK146374|Ruvbl1|56505|RuvB-like protein 1	AK146258|Ruvbl1|56505|RuvB-like protein 1	AK132783|Ruvbl1|56505|RuvB-like protein 1	AK156078|Ruvbl1|56505|RuvB-like protein 1	BC004718|Ruvbl1|56505|RuvB-like protein 1	AK145062|Ruvbl1|56505|RuvB-like protein 1	AK012170|Ruvbl1|56505|RuvB-like protein 1
mm9_v1_chr3_+_88425352_88425437	1.44945	SOX{8,9,10}.p2	AK167628|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK171223|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr1_+_174271338_174271373	1.44816	SOX{8,9,10}.p2	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr1_-_188573165_188573236	1.4479	SOX{8,9,10}.p2	AK007616|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013217|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	BC006787|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK010658|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK087997|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013204|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK169088|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	NM_026041|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)
mm9_v1_chr2_-_102026486_102026616	1.43576	SOX{8,9,10}.p2	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr1_+_59538966_59539075	1.4328	SOX{8,9,10}.p2	NM_008057|Fzd7|14369|frizzled homolog 7 (Drosophila)	BC063077|Fzd7|14369|frizzled homolog 7 (Drosophila)
mm9_v1_chr2_+_31101302_31101442	1.43169	SOX{8,9,10}.p2	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr9_+_70526702_70526924	1.42116	SOX{8,9,10}.p2	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr8_-_4324998_4325031	1.41936	SOX{8,9,10}.p2	AK148528|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr8_-_74150754_74150876	1.4178	SOX{8,9,10}.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr14_-_122097583_122097657	1.41254	SOX{8,9,10}.p2	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr12_+_36883692_36883781	1.41179	SOX{8,9,10}.p2	NM_146033|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	AK077556|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC012275|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC024959|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chr11_-_3439172_3439299	1.40418	SOX{8,9,10}.p2	BC066192|Smtn|29856|smoothelin	BC069836|Smtn|29856|smoothelin	BC069839|Smtn|29856|smoothelin	BC010599|Smtn|29856|smoothelin	AF064236|Smtn|29856|smoothelin	AJ010305|Smtn|29856|smoothelin	AK166385|Smtn|29856|smoothelin	AK170516|Smtn|29856|smoothelin	AK085412|Smtn|29856|smoothelin	AK030932|Smtn|29856|smoothelin	AK138898|Smtn|29856|smoothelin	NM_001159284|Smtn|29856|smoothelin	NM_013870|Smtn|29856|smoothelin
mm9_v1_chr6_+_30351902_30351953	1.40361	SOX{8,9,10}.p2	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr6_+_107479719_107479841	1.40194	SOX{8,9,10}.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr14_+_27852148_27852279	1.40187	SOX{8,9,10}.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr5_-_130293069_130293128	1.40168	SOX{8,9,10}.p2	AK088865|Psph|100678|phosphoserine phosphatase	AK089221|Psph|100678|phosphoserine phosphatase	NM_133900|Psph|100678|phosphoserine phosphatase
mm9_v1_chr12_-_13255934_13256032	1.40107	SOX{8,9,10}.p2	BC008570|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK166146|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK028341|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK053259|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK160982|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	BC010624|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	NM_134040|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK153335|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK132157|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm9_v1_chr15_-_36937065_36937180	1.39769	SOX{8,9,10}.p2	AK132053|Zfp706|68036|zinc finger protein 706	AK167897|Zfp706|68036|zinc finger protein 706	AK168303|Zfp706|68036|zinc finger protein 706	BC054356|Zfp706|68036|zinc finger protein 706	AK167791|Zfp706|68036|zinc finger protein 706	BC052459|Zfp706|68036|zinc finger protein 706	NM_026521|Zfp706|68036|zinc finger protein 706
mm9_v1_chr7_-_137410321_137410321	1.38306	SOX{8,9,10}.p2	NM_010207|Fgfr2|14183|fibroblast growth factor receptor 2	NM_201601|Fgfr2|14183|fibroblast growth factor receptor 2
mm9_v1_chrX_-_153929935_153930011	1.38249	SOX{8,9,10}.p2	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr11_+_58144207_58144291	1.38067	SOX{8,9,10}.p2	AK156171|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK159202|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK172333|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_001161338|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_024480|Sh3bp5l|79566|SH3 binding domain protein 5 like	BC094418|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK166491|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK144928|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK086088|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK150129|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK167203|Sh3bp5l|79566|SH3 binding domain protein 5 like
mm9_v1_chr4_-_148681792_148681843	1.38013	SOX{8,9,10}.p2	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr11_+_121098532_121098610	1.37555	SOX{8,9,10}.p2	NM_026272|Narf|67608|nuclear prelamin A recognition factor	AK076232|Narf|67608|nuclear prelamin A recognition factor	AK081305|Narf|67608|nuclear prelamin A recognition factor	AK013432|Narf|67608|nuclear prelamin A recognition factor	BC016090|Narf|67608|nuclear prelamin A recognition factor
mm9_v1_chr18_+_37120093_37120209	1.37458	SOX{8,9,10}.p2	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr2_-_32837527_32837604	1.37444	SOX{8,9,10}.p2	AF232061|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856043|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856044|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856045|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856046|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AJ245936|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	Y17802|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	BC090993|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	NM_019488|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK141193|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK170319|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK081806|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK155792|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8
mm9_v1_chr8_+_10153910_10154187	1.37337	SOX{8,9,10}.p2	BC072580|Myo16|244281|myosin XVI	NM_001081397|Myo16|244281|myosin XVI	BC151049|Myo16|244281|myosin XVI	BC151051|Myo16|244281|myosin XVI	BC157966|Myo16|244281|myosin XVI	BC172122|Myo16|244281|myosin XVI	BC082311|Myo16|244281|myosin XVI	AK082350|Myo16|244281|myosin XVI
mm9_v1_chr5_-_145891052_145891100	1.36921	SOX{8,9,10}.p2	AK177019|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr14_-_34260323_34260352	1.3629	SOX{8,9,10}.p2	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr11_-_74491006_74491182	1.36223	SOX{8,9,10}.p2	AK152284|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK164276|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr11_+_75161934_75162104	1.36113	SOX{8,9,10}.p2	NM_001102611|Smyd4|319822|SET and MYND domain containing 4	AK166057|Smyd4|319822|SET and MYND domain containing 4	AK089959|Smyd4|319822|SET and MYND domain containing 4	AK141484|Smyd4|319822|SET and MYND domain containing 4	BC095952|Smyd4|319822|SET and MYND domain containing 4	BC049810|Smyd4|319822|SET and MYND domain containing 4	AK030380|Smyd4|319822|SET and MYND domain containing 4	AK154507|Smyd4|319822|SET and MYND domain containing 4
mm9_v1_chr6_-_87285690_87285768	1.35398	SOX{8,9,10}.p2	AF378762|Antxr1|69538|anthrax toxin receptor 1	BC094544|Antxr1|69538|anthrax toxin receptor 1	AK031465|Antxr1|69538|anthrax toxin receptor 1	NM_054041|Antxr1|69538|anthrax toxin receptor 1
mm9_v1_chr1_+_181891219_181891219	1.34979	SOX{8,9,10}.p2	BC158017|Cdc42bpa|226751|CDC42 binding protein kinase alpha	BC158095|Cdc42bpa|226751|CDC42 binding protein kinase alpha	NM_001033285|Cdc42bpa|226751|CDC42 binding protein kinase alpha
mm9_v1_chr1_+_160292665_160292848	1.34858	SOX{8,9,10}.p2	AK147450|Astn1|11899|astrotactin 1	AK138576|Astn1|11899|astrotactin 1	AK045561|Astn1|11899|astrotactin 1	AK165200|Astn1|11899|astrotactin 1	U48797|Astn1|11899|astrotactin 1	AB093222|Astn1|11899|astrotactin 1
mm9_v1_chr9_+_98325217_98325252	1.34518	SOX{8,9,10}.p2	AK011641|Rbp1|19659|retinol binding protein 1, cellular	BC091751|Rbp1|19659|retinol binding protein 1, cellular	BC018254|Rbp1|19659|retinol binding protein 1, cellular
mm9_v1_chr2_+_142904128_142904227	1.34314	SOX{8,9,10}.p2	BC139152|Otor|57329|otoraplin	BC139153|Otor|57329|otoraplin	AK047965|Otor|57329|otoraplin	AJ243939|Otor|57329|otoraplin	AF243504|Otor|57329|otoraplin	NM_020595|Otor|57329|otoraplin
mm9_v1_chr7_-_111001598_111001720	1.34292	SOX{8,9,10}.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr6_-_97155541_97155640	1.34286	SOX{8,9,10}.p2	BC002002|Uba3|22200|ubiquitin-like modifier activating enzyme 3	BC080776|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK048148|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK032514|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK166655|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK168859|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK043801|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK014433|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_001111106|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_011666|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK159381|Uba3|22200|ubiquitin-like modifier activating enzyme 3
mm9_v1_chr15_-_95359136_95359208	1.34189	SOX{8,9,10}.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chrX_+_159198302_159198437	1.33994	SOX{8,9,10}.p2	NM_009031|Rbbp7|245688|retinoblastoma binding protein 7	AK146439|Rbbp7|245688|retinoblastoma binding protein 7	AK147062|Rbbp7|245688|retinoblastoma binding protein 7	AK153913|Rbbp7|245688|retinoblastoma binding protein 7	AK148852|Rbbp7|245688|retinoblastoma binding protein 7	U35142|Rbbp7|245688|retinoblastoma binding protein 7	BC003785|Rbbp7|245688|retinoblastoma binding protein 7	AK076016|Rbbp7|245688|retinoblastoma binding protein 7	AK135779|Rbbp7|245688|retinoblastoma binding protein 7	AK135956|Rbbp7|245688|retinoblastoma binding protein 7	AK078349|Rbbp7|245688|retinoblastoma binding protein 7	AK082892|Rbbp7|245688|retinoblastoma binding protein 7	AK136110|Rbbp7|245688|retinoblastoma binding protein 7	AK145531|Rbbp7|245688|retinoblastoma binding protein 7	AK146014|Rbbp7|245688|retinoblastoma binding protein 7	AK146904|Rbbp7|245688|retinoblastoma binding protein 7	AK146967|Rbbp7|245688|retinoblastoma binding protein 7	AK160023|Rbbp7|245688|retinoblastoma binding protein 7	AK132101|Rbbp7|245688|retinoblastoma binding protein 7	AK145651|Rbbp7|245688|retinoblastoma binding protein 7
mm9_v1_chr19_+_7049425_7049555	1.33659	SOX{8,9,10}.p2	AK141152|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	X97490|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	BC082545|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	NM_008889|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm9_v1_chr2_+_25413360_25413471	1.33534	SOX{8,9,10}.p2	AK003557|Edf1|59022|endothelial differentiation-related factor 1	AK002345|Edf1|59022|endothelial differentiation-related factor 1	AK010191|Edf1|59022|endothelial differentiation-related factor 1	AB030185|Edf1|59022|endothelial differentiation-related factor 1	NM_021519|Edf1|59022|endothelial differentiation-related factor 1	BC023472|Edf1|59022|endothelial differentiation-related factor 1	AJ309569|Edf1|59022|endothelial differentiation-related factor 1
mm9_v1_chr7_-_4763923_4763976	1.33416	SOX{8,9,10}.p2	BC083323|Ube2s|77891|ubiquitin-conjugating enzyme E2S	BC030171|Ube2s|77891|ubiquitin-conjugating enzyme E2S	BC012255|Ube2s|77891|ubiquitin-conjugating enzyme E2S	NM_133777|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK020143|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK146276|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK003078|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK154026|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK017648|Ube2s|77891|ubiquitin-conjugating enzyme E2S	AK154067|Ube2s|77891|ubiquitin-conjugating enzyme E2S
mm9_v1_chrX_-_92853721_92853847	1.33041	SOX{8,9,10}.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr3_-_143868114_143868170	1.32862	SOX{8,9,10}.p2	AK033097|Lmo4|16911|LIM domain only 4	AK159590|Lmo4|16911|LIM domain only 4
mm9_v1_chr9_-_108481069_108481081	1.32349	SOX{8,9,10}.p2	AB041854|Wdr6|83669|WD repeat domain 6
mm9_v1_chr17_-_7997838_7997838	1.32341	SOX{8,9,10}.p2	NM_001081416|Fndc1|68655|fibronectin type III domain containing 1
mm9_v1_chrX_+_20265093_20265121	1.32304	SOX{8,9,10}.p2	AK166188|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr7_-_29157512_29157714	1.32012	SOX{8,9,10}.p2	AK131110|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AF465238|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AK144152|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_001083912|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_138752|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm9_v1_chr5_+_137994744_137994862	1.31667	SOX{8,9,10}.p2	BC049539|Actl6b|83766|actin-like 6B	NM_031404|Actl6b|83766|actin-like 6B	AB075226|Actl6b|83766|actin-like 6B
mm9_v1_chr9_+_95538150_95538173	1.31412	SOX{8,9,10}.p2	AF352788|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	AK132395|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	BC051174|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr7_+_27542160_27542205	1.3136	SOX{8,9,10}.p2	BC137965|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	BC137966|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AK029227|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AF047529|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	NM_007814|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19
mm9_v1_chr15_-_98507886_98507905	1.31297	SOX{8,9,10}.p2	AK161870|Rnd1|223881|Rho family GTPase 1	BC048531|Rnd1|223881|Rho family GTPase 1	AK039992|Rnd1|223881|Rho family GTPase 1	AK043639|Rnd1|223881|Rho family GTPase 1	NM_172612|Rnd1|223881|Rho family GTPase 1
mm9_v1_chr12_-_32746061_32746210	1.30294	SOX{8,9,10}.p2	BC048710|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK011647|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK138963|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK041013|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK135621|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	NM_011158|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta
mm9_v1_chr4_+_130125682_130125774	1.29674	SOX{8,9,10}.p2	NM_025998|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK011850|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116391|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116392|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr9_+_55889639_55889686	1.29592	SOX{8,9,10}.p2	AK041996|Rcn2|26611|reticulocalbin 2	NM_011992|Rcn2|26611|reticulocalbin 2	AF049125|Rcn2|26611|reticulocalbin 2	AK077486|Rcn2|26611|reticulocalbin 2	AK077734|Rcn2|26611|reticulocalbin 2	AK079156|Rcn2|26611|reticulocalbin 2	AK169765|Rcn2|26611|reticulocalbin 2	AK078106|Rcn2|26611|reticulocalbin 2	BC132320|Rcn2|26611|reticulocalbin 2	BC145668|Rcn2|26611|reticulocalbin 2
mm9_v1_chr9_-_103664100_103664222	1.29474	SOX{8,9,10}.p2	BC052085|Tmem108|81907|transmembrane protein 108	AK077586|Tmem108|81907|transmembrane protein 108	AK044989|Tmem108|81907|transmembrane protein 108	AK047474|Tmem108|81907|transmembrane protein 108	AK086266|Tmem108|81907|transmembrane protein 108	AK141589|Tmem108|81907|transmembrane protein 108	AK052330|Tmem108|81907|transmembrane protein 108	NM_178638|Tmem108|81907|transmembrane protein 108
mm9_v1_chr1_+_87804349_87804399	1.29291	SOX{8,9,10}.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr16_-_91728816_91728882	1.28366	SOX{8,9,10}.p2	BC019387|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1	AK008846|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1	BC010479|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1	NM_133679|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1	AK010433|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1	AK145827|Cryzl1|66609|crystallin, zeta (quinone reductase)-like 1
mm9_v1_chr6_+_134932018_134932018	1.27801	SOX{8,9,10}.p2	NM_001109914|Apold1|381823|apolipoprotein L domain containing 1
mm9_v1_chr7_-_150734970_150735032	1.27683	SOX{8,9,10}.p2	AJ002198|Nap1l4|17955|nucleosome assembly protein 1-like 4	NM_008672|Nap1l4|17955|nucleosome assembly protein 1-like 4	AK156835|Nap1l4|17955|nucleosome assembly protein 1-like 4	BC089018|Nap1l4|17955|nucleosome assembly protein 1-like 4
mm9_v1_chr2_+_84903869_84903875	1.27434	SOX{8,9,10}.p2	BC024499|Tnks1bp1|228140|tankyrase 1 binding protein 1
mm9_v1_chr8_-_107850154_107850175	1.26557	SOX{8,9,10}.p2	BC034290|Lrrc29|234684|leucine rich repeat containing 29	AK041606|Lrrc29|234684|leucine rich repeat containing 29	AK042435|Lrrc29|234684|leucine rich repeat containing 29	AK170400|Lrrc29|234684|leucine rich repeat containing 29	AK148120|Lrrc29|234684|leucine rich repeat containing 29	NM_177449|Lrrc29|234684|leucine rich repeat containing 29
mm9_v1_chr10_-_94877824_94877916	1.26417	SOX{8,9,10}.p2	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr5_+_34338625_34338665	1.26324	SOX{8,9,10}.p2	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr9_-_106794158_106794229	1.26207	SOX{8,9,10}.p2	AK176996|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr19_-_7114388_7114515	1.25233	SOX{8,9,10}.p2	AK181280|Stip1|20867|stress-induced phosphoprotein 1	AK204291|Stip1|20867|stress-induced phosphoprotein 1	BC003794|Stip1|20867|stress-induced phosphoprotein 1	AK134171|Stip1|20867|stress-induced phosphoprotein 1	AK149493|Stip1|20867|stress-induced phosphoprotein 1	AK168181|Stip1|20867|stress-induced phosphoprotein 1	AK161645|Stip1|20867|stress-induced phosphoprotein 1	U27830|Stip1|20867|stress-induced phosphoprotein 1	AK167273|Stip1|20867|stress-induced phosphoprotein 1	AK075988|Stip1|20867|stress-induced phosphoprotein 1	AK080936|Stip1|20867|stress-induced phosphoprotein 1	AK088494|Stip1|20867|stress-induced phosphoprotein 1	NM_016737|Stip1|20867|stress-induced phosphoprotein 1
mm9_v1_chr19_-_46114019_46114148	1.24085	SOX{8,9,10}.p2	NM_010697|Ldb1|16825|LIM domain binding 1	U69270|Ldb1|16825|LIM domain binding 1
mm9_v1_chr11_+_3795221_3795283	1.2395	SOX{8,9,10}.p2	NM_173745|Dusp18|75219|dual specificity phosphatase 18	AK079664|Dusp18|75219|dual specificity phosphatase 18	BC020036|Dusp18|75219|dual specificity phosphatase 18	AK015917|Dusp18|75219|dual specificity phosphatase 18	AK081916|Dusp18|75219|dual specificity phosphatase 18
mm9_v1_chr3_-_80606500_80606592	1.23939	SOX{8,9,10}.p2	BC066193|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	X57498|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	BC048248|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr9_-_75246118_75246213	1.23583	SOX{8,9,10}.p2	BC048779|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr11_-_109472695_109472714	1.23421	SOX{8,9,10}.p2	NM_145940|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK031672|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK045131|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK050495|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr7_-_104727924_104728026	1.23224	SOX{8,9,10}.p2	BC026557|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007717|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK008195|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007558|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	BC062811|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177945|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177946|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177947|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_183251|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene
mm9_v1_chr2_+_14525932_14526000	1.22941	SOX{8,9,10}.p2	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr1_-_192802869_192802928	1.22738	SOX{8,9,10}.p2	AK140989|Vash2|226841|vasohibin 2	NM_144879|Vash2|226841|vasohibin 2
mm9_v1_chr1_+_87804443_87804463	1.22611	SOX{8,9,10}.p2	AK190372|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr17_+_43938887_43938898	1.22007	SOX{8,9,10}.p2	AK138768|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr8_-_38001686_38001686	1.21522	SOX{8,9,10}.p2	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr3_+_88425294_88425344	1.21081	SOX{8,9,10}.p2	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr17_+_33947466_33947491	1.208	SOX{8,9,10}.p2	AK002623|Kank3|80880|KN motif and ankyrin repeat domains 3	AK132011|Kank3|80880|KN motif and ankyrin repeat domains 3	BC061055|Kank3|80880|KN motif and ankyrin repeat domains 3	NM_030697|Kank3|80880|KN motif and ankyrin repeat domains 3	BC037741|Kank3|80880|KN motif and ankyrin repeat domains 3
mm9_v1_chr5_-_101227486_101227632	1.20614	SOX{8,9,10}.p2	BC109169|Helq|191578|helicase, POLQ-like	BC109170|Helq|191578|helicase, POLQ-like	AK052427|Helq|191578|helicase, POLQ-like	BC082601|Helq|191578|helicase, POLQ-like	AK050769|Helq|191578|helicase, POLQ-like	AK040335|Helq|191578|helicase, POLQ-like	NM_001081107|Helq|191578|helicase, POLQ-like
mm9_v1_chr15_+_102797226_102797241	1.20389	SOX{8,9,10}.p2	BC053405|Hoxc10|209448|homeobox C10	AK138664|Hoxc10|209448|homeobox C10
mm9_v1_chr10_+_90039435_90039495	1.2025	SOX{8,9,10}.p2	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr1_-_44175585_44175667	1.20233	SOX{8,9,10}.p2	BC023141|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK079701|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK007835|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035391|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK053315|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035899|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	NM_023645|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK077468|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK170300|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1
mm9_v1_chr10_-_61802814_61802882	1.20056	SOX{8,9,10}.p2	AK214520|Hk1|15275|hexokinase 1	J05277|Hk1|15275|hexokinase 1	BC027316|Hk1|15275|hexokinase 1	AK149749|Hk1|15275|hexokinase 1
mm9_v1_chr12_-_71087988_71088118	1.19967	SOX{8,9,10}.p2	AJ292968|Sav1|64010|salvador homolog 1 (Drosophila)	NM_022028|Sav1|64010|salvador homolog 1 (Drosophila)
mm9_v1_chr6_-_125141525_125141634	1.19881	SOX{8,9,10}.p2	BC029133|Ncapd2|68298|non-SMC condensin I complex, subunit D2	AK129068|Ncapd2|68298|non-SMC condensin I complex, subunit D2	BC026982|Ncapd2|68298|non-SMC condensin I complex, subunit D2	NM_146171|Ncapd2|68298|non-SMC condensin I complex, subunit D2	BC025460|Ncapd2|68298|non-SMC condensin I complex, subunit D2	AK156143|Ncapd2|68298|non-SMC condensin I complex, subunit D2
mm9_v1_chr8_-_13677450_13677625	1.19534	SOX{8,9,10}.p2	BC068297|Rasa3|19414|RAS p21 protein activator 3	AK147896|Rasa3|19414|RAS p21 protein activator 3	U20238|Rasa3|19414|RAS p21 protein activator 3	BC057300|Rasa3|19414|RAS p21 protein activator 3	AK053353|Rasa3|19414|RAS p21 protein activator 3	AK166354|Rasa3|19414|RAS p21 protein activator 3	NM_009025|Rasa3|19414|RAS p21 protein activator 3	AK141511|Rasa3|19414|RAS p21 protein activator 3	BC060195|Rasa3|19414|RAS p21 protein activator 3
mm9_v1_chr10_+_53316720_53316974	1.19482	SOX{8,9,10}.p2	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr16_+_91225794_91225820	1.19422	SOX{8,9,10}.p2	BC051967|Olig2|50913|oligodendrocyte transcription factor 2	NM_016967|Olig2|50913|oligodendrocyte transcription factor 2	AB038697|Olig2|50913|oligodendrocyte transcription factor 2	AK080615|Olig2|50913|oligodendrocyte transcription factor 2
mm9_v1_chr5_-_92512683_92512782	1.19347	SOX{8,9,10}.p2	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr4_+_151470827_151470883	1.18791	SOX{8,9,10}.p2	AY605057|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	AY605058|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	NM_001004156|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr2_+_71367501_71367643	1.18586	SOX{8,9,10}.p2	NM_010053|Dlx1|13390|distal-less homeobox 1	U51001|Dlx1|13390|distal-less homeobox 1	BC079609|Dlx1|13390|distal-less homeobox 1
mm9_v1_chr2_+_30700800_30700941	1.18501	SOX{8,9,10}.p2	X52875|Prrx2|20204|paired related homeobox 2	BC137872|Prrx2|20204|paired related homeobox 2	BC137874|Prrx2|20204|paired related homeobox 2	NM_009116|Prrx2|20204|paired related homeobox 2
mm9_v1_chr1_-_191511950_191512003	1.18132	SOX{8,9,10}.p2	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chr15_-_26825266_26825387	1.17739	SOX{8,9,10}.p2	AK129227|Fbxl7|448987|F-box and leucine-rich repeat protein 7	BC050864|Fbxl7|448987|F-box and leucine-rich repeat protein 7	BC091646|Fbxl7|448987|F-box and leucine-rich repeat protein 7	NM_176959|Fbxl7|448987|F-box and leucine-rich repeat protein 7	AK048688|Fbxl7|448987|F-box and leucine-rich repeat protein 7	AK051849|Fbxl7|448987|F-box and leucine-rich repeat protein 7
mm9_v1_chr14_+_51716032_51716087	1.17642	SOX{8,9,10}.p2	AY762362|Rnase4|58809|ribonuclease, RNase A family 4	AK050451|Rnase4|58809|ribonuclease, RNase A family 4	BC055355|Ang|11727|angiogenin, ribonuclease, RNase A family, 5
mm9_v1_chr4_-_131901576_131901664	1.17627	SOX{8,9,10}.p2	BC019807|Rcc1|100088|regulator of chromosome condensation 1	AK155225|Rcc1|100088|regulator of chromosome condensation 1	AK150610|Rcc1|100088|regulator of chromosome condensation 1	AK153193|Rcc1|100088|regulator of chromosome condensation 1	AK153994|Rcc1|100088|regulator of chromosome condensation 1	AK150153|Rcc1|100088|regulator of chromosome condensation 1	BC057645|Rcc1|100088|regulator of chromosome condensation 1	AK076089|Rcc1|100088|regulator of chromosome condensation 1	NM_001197082|Rcc1|100088|regulator of chromosome condensation 1	NM_133878|Rcc1|100088|regulator of chromosome condensation 1
mm9_v1_chrX_-_156560678_156560850	1.17287	SOX{8,9,10}.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr7_+_109614267_109614297	1.1706	SOX{8,9,10}.p2	AK200772|Rrm1|20133|ribonucleotide reductase M1	AK203165|Rrm1|20133|ribonucleotide reductase M1	AK209968|Rrm1|20133|ribonucleotide reductase M1	AK211974|Rrm1|20133|ribonucleotide reductase M1
mm9_v1_chr15_-_97661807_97661936	1.16812	SOX{8,9,10}.p2	AF207749|Hdac7|56233|histone deacetylase 7	AK040406|Hdac7|56233|histone deacetylase 7	AK150041|Hdac7|56233|histone deacetylase 7	AK036586|Hdac7|56233|histone deacetylase 7	AK044287|Hdac7|56233|histone deacetylase 7
mm9_v1_chr9_-_123626642_123626742	1.16412	SOX{8,9,10}.p2	AK046515|Lztfl1|93730|leucine zipper transcription factor-like 1	BC037045|Lztfl1|93730|leucine zipper transcription factor-like 1	AJ297352|Lztfl1|93730|leucine zipper transcription factor-like 1	BC098224|Lztfl1|93730|leucine zipper transcription factor-like 1	BC026840|Lztfl1|93730|leucine zipper transcription factor-like 1	NM_033322|Lztfl1|93730|leucine zipper transcription factor-like 1	AK054003|Lztfl1|93730|leucine zipper transcription factor-like 1	AK157770|Lztfl1|93730|leucine zipper transcription factor-like 1	AK145263|Lztfl1|93730|leucine zipper transcription factor-like 1	AK030068|Lztfl1|93730|leucine zipper transcription factor-like 1	AK029671|Lztfl1|93730|leucine zipper transcription factor-like 1	AK041091|Lztfl1|93730|leucine zipper transcription factor-like 1	AK147312|Lztfl1|93730|leucine zipper transcription factor-like 1
mm9_v1_chrX_+_72341192_72341192	1.16401	SOX{8,9,10}.p2	NM_001030307|Dkc1|245474|dyskeratosis congenita 1, dyskerin homolog (human)
mm9_v1_chr6_+_124780226_124780272	1.16392	SOX{8,9,10}.p2	AK008606|Cdca3|14793|cell division cycle associated 3	AK169792|Cdca3|14793|cell division cycle associated 3	AK010409|Cdca3|14793|cell division cycle associated 3	AK028159|Cdca3|14793|cell division cycle associated 3	AK145537|Cdca3|14793|cell division cycle associated 3	BC002006|Cdca3|14793|cell division cycle associated 3	BC027172|Cdca3|14793|cell division cycle associated 3
mm9_v1_chrX_-_132706705_132706789	1.1608	SOX{8,9,10}.p2	AK137039|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK012030|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK027927|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK083347|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK156414|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK014459|Tceal8|66684|transcription elongation factor A (SII)-like 8	BC027269|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK076203|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_001168578|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_025703|Tceal8|66684|transcription elongation factor A (SII)-like 8
mm9_v1_chr10_-_79896086_79896137	1.15646	SOX{8,9,10}.p2	AF352579|Tcf3|21423|transcription factor 3
mm9_v1_chr15_+_77307476_77307476	1.1497	SOX{8,9,10}.p2	AK033521|Apol10a|245282|apolipoprotein L 10a	NM_177744|Apol10a|245282|apolipoprotein L 10a
mm9_v1_chr6_-_118147735_118147761	1.1474	SOX{8,9,10}.p2	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr16_+_34995000_34995001	1.1472	SOX{8,9,10}.p2	BC038902|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr9_+_59465036_59465209	1.1458	SOX{8,9,10}.p2	NM_029922|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	BC052064|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK076321|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK007206|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK035349|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK021076|Parp6|67287|poly (ADP-ribose) polymerase family, member 6
mm9_v1_chr3_-_144233091_144233106	1.13978	SOX{8,9,10}.p2	BC025443|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr6_-_146596323_146596323	1.13598	SOX{8,9,10}.p2	NM_001178001|Gm6654|626175|predicted pseudogene 6654
mm9_v1_chr18_+_37854011_37854154	1.13589	SOX{8,9,10}.p2	AK043161|Pcdhga5|93713|protocadherin gamma subfamily A, 5	BC057404|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AK043491|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AY013799|Pcdhga5|93713|protocadherin gamma subfamily A, 5	NM_033588|Pcdhga5|93713|protocadherin gamma subfamily A, 5
mm9_v1_chr6_+_124780193_124780220	1.13346	SOX{8,9,10}.p2	NM_013538|Cdca3|14793|cell division cycle associated 3	AK011313|Cdca3|14793|cell division cycle associated 3
mm9_v1_chr10_-_93498482_93498486	1.13315	SOX{8,9,10}.p2	AK042540|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr5_-_136410488_136410547	1.1327	SOX{8,9,10}.p2	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr10_-_94878117_94878117	1.13115	SOX{8,9,10}.p2	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr3_+_80841086_80841191	1.12881	SOX{8,9,10}.p2	AK052947|Pdgfc|54635|platelet-derived growth factor, C polypeptide	BC029099|Pdgfc|54635|platelet-derived growth factor, C polypeptide	AF117608|Pdgfc|54635|platelet-derived growth factor, C polypeptide	BC037696|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chrX_-_45388010_45388030	1.12875	SOX{8,9,10}.p2	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr18_+_37303622_37303622	1.12782	SOX{8,9,10}.p2	AY013769|Pcdhac2|353237|protocadherin alpha subfamily C, 2	NM_001003672|Pcdhac2|353237|protocadherin alpha subfamily C, 2
mm9_v1_chr15_-_84388245_84388282	1.12562	SOX{8,9,10}.p2	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr17_+_43938789_43938843	1.12462	SOX{8,9,10}.p2	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr7_+_53631843_53631909	1.12244	SOX{8,9,10}.p2	AK076157|Myod1|17927|myogenic differentiation 1	NM_010866|Myod1|17927|myogenic differentiation 1	AK142859|Myod1|17927|myogenic differentiation 1	M84918|Myod1|17927|myogenic differentiation 1	M18779|Myod1|17927|myogenic differentiation 1	BC103613|Myod1|17927|myogenic differentiation 1	BC103618|Myod1|17927|myogenic differentiation 1	BC103619|Myod1|17927|myogenic differentiation 1
mm9_v1_chr18_+_42671163_42671217	1.11892	SOX{8,9,10}.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr7_-_123182257_123182257	1.11822	SOX{8,9,10}.p2	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr1_-_176851918_176851937	1.11646	SOX{8,9,10}.p2	AK161827|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	BC079905|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr1_-_33871349_33871443	1.11644	SOX{8,9,10}.p2	AK015797|Zfp451|98403|zinc finger protein 451
mm9_v1_chr4_-_127031320_127031326	1.11562	SOX{8,9,10}.p2	AK132468|Gjb4|14621|gap junction protein, beta 4	AK076408|Gjb4|14621|gap junction protein, beta 4	NM_008127|Gjb4|14621|gap junction protein, beta 4
mm9_v1_chr17_-_79754365_79754410	1.11213	SOX{8,9,10}.p2	BC092297|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	BC034714|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK012309|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK150214|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chr1_+_169528706_169528770	1.11021	SOX{8,9,10}.p2	X66225|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr4_-_150418667_150418697	1.11008	SOX{8,9,10}.p2	AK036345|Per3|18628|period homolog 3 (Drosophila)	AF050182|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chrX_+_162676870_162676901	1.10624	SOX{8,9,10}.p2	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr17_+_25023618_25023724	1.10616	SOX{8,9,10}.p2	NM_001163750|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	NM_001163751|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	BC072556|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK076170|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK082768|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK220234|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK156579|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK167474|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3
mm9_v1_chr11_-_75161767_75161884	1.09973	SOX{8,9,10}.p2	AK177196|Rpa1|68275|replication protein A1	AK197958|Rpa1|68275|replication protein A1	AK203654|Rpa1|68275|replication protein A1	AK167598|Rpa1|68275|replication protein A1	AK150785|Rpa1|68275|replication protein A1	AK165316|Rpa1|68275|replication protein A1	BC019119|Rpa1|68275|replication protein A1	AK035084|Rpa1|68275|replication protein A1	AK152296|Rpa1|68275|replication protein A1	AK153107|Rpa1|68275|replication protein A1	AK165944|Rpa1|68275|replication protein A1	AK169599|Rpa1|68275|replication protein A1	AK148035|Rpa1|68275|replication protein A1	AK168400|Rpa1|68275|replication protein A1	AK151590|Rpa1|68275|replication protein A1	AK153144|Rpa1|68275|replication protein A1	NM_001164223|Rpa1|68275|replication protein A1	NM_026653|Rpa1|68275|replication protein A1
mm9_v1_chr1_-_20608010_20608144	1.09723	SOX{8,9,10}.p2	AY438374|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK143992|Pkhd1|241035|polycystic kidney and hepatic disease 1	AY130764|Pkhd1|241035|polycystic kidney and hepatic disease 1	NM_153179|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK052698|Pkhd1|241035|polycystic kidney and hepatic disease 1
mm9_v1_chrX_-_7783571_7783654	1.08856	SOX{8,9,10}.p2	BC027292|Porcn|53627|porcupine homolog (Drosophila)	BC032284|Porcn|53627|porcupine homolog (Drosophila)	AK010405|Porcn|53627|porcupine homolog (Drosophila)	AB036746|Porcn|53627|porcupine homolog (Drosophila)	AB036747|Porcn|53627|porcupine homolog (Drosophila)	AB036748|Porcn|53627|porcupine homolog (Drosophila)	AB036749|Porcn|53627|porcupine homolog (Drosophila)	NM_016913|Porcn|53627|porcupine homolog (Drosophila)	NM_023638|Porcn|53627|porcupine homolog (Drosophila)	NM_145907|Porcn|53627|porcupine homolog (Drosophila)	NM_145908|Porcn|53627|porcupine homolog (Drosophila)
mm9_v1_chr12_-_21423383_21423468	1.08207	SOX{8,9,10}.p2	BC080802|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK159403|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK163237|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK145568|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK146371|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK150850|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK167397|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK012540|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151715|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK008948|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151437|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151864|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK159817|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC085299|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr4_+_118781336_118781380	1.08197	SOX{8,9,10}.p2	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr11_-_94834751_94834776	1.07742	SOX{8,9,10}.p2	AF019564|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	BC060287|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	AK009015|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	AK075915|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	NM_001136080|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)
mm9_v1_chr1_-_176851949_176851953	1.07484	SOX{8,9,10}.p2	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr3_-_86724773_86724792	1.07431	SOX{8,9,10}.p2	BC056921|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr16_+_95924061_95924067	1.0724	SOX{8,9,10}.p2	AK128933|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK152750|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK143687|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK144974|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK151315|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153339|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153478|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr17_-_90487479_90487653	1.07233	SOX{8,9,10}.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr3_-_143865162_143865359	1.07189	SOX{8,9,10}.p2	BC003488|Lmo4|16911|LIM domain only 4	BC100382|Lmo4|16911|LIM domain only 4	AF102817|Lmo4|16911|LIM domain only 4	AK138278|Lmo4|16911|LIM domain only 4	NM_001161770|Lmo4|16911|LIM domain only 4	NM_001161769|Lmo4|16911|LIM domain only 4
mm9_v1_chr13_-_100286521_100286556	1.07125	SOX{8,9,10}.p2	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr4_-_11181335_11181349	1.06604	SOX{8,9,10}.p2	BC049092|Ints8|72656|integrator complex subunit 8	BC057618|Ints8|72656|integrator complex subunit 8
mm9_v1_chrX_+_90900201_90900217	1.0656	SOX{8,9,10}.p2	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr2_+_74535801_74535819	1.06107	SOX{8,9,10}.p2	NM_013555|Hoxd9|15438|homeobox D9
mm9_v1_chr8_+_73051651_73051898	1.0579	SOX{8,9,10}.p2	AK167663|Fkbp8|14232|FK506 binding protein 8	AK158155|Fkbp8|14232|FK506 binding protein 8	AY278608|Fkbp8|14232|FK506 binding protein 8	BC027808|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_-_28929698_28929810	1.05481	SOX{8,9,10}.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr7_+_119369347_119369415	1.05177	SOX{8,9,10}.p2	NM_001193305|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	NM_177282|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK030608|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK138935|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163078|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK143191|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK161075|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163231|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2
mm9_v1_chr11_-_115375672_115375704	1.05126	SOX{8,9,10}.p2	BC003758|Hn1|15374|hematological and neurological expressed sequence 1	NM_008258|Hn1|15374|hematological and neurological expressed sequence 1	U90123|Hn1|15374|hematological and neurological expressed sequence 1	AK167961|Hn1|15374|hematological and neurological expressed sequence 1	AK013122|Hn1|15374|hematological and neurological expressed sequence 1	AK004909|Hn1|15374|hematological and neurological expressed sequence 1	AK010057|Hn1|15374|hematological and neurological expressed sequence 1	AK159784|Hn1|15374|hematological and neurological expressed sequence 1	AK167466|Hn1|15374|hematological and neurological expressed sequence 1	AK168632|Hn1|15374|hematological and neurological expressed sequence 1	AK014212|Hn1|15374|hematological and neurological expressed sequence 1	AK152560|Hn1|15374|hematological and neurological expressed sequence 1	AK150410|Hn1|15374|hematological and neurological expressed sequence 1
mm9_v1_chr12_+_36883788_36883809	1.05034	SOX{8,9,10}.p2	AK164434|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chr11_+_75300330_75300364	1.04808	SOX{8,9,10}.p2	BC093481|Prpf8|192159|pre-mRNA processing factor 8	AK144232|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr4_-_155159937_155159982	1.04784	SOX{8,9,10}.p2	BC147318|Tmem88b|320587|transmembrane protein 88B	BC147319|Tmem88b|320587|transmembrane protein 88B	AK035998|Tmem88b|320587|transmembrane protein 88B	AK158459|Tmem88b|320587|transmembrane protein 88B	NM_001033394|Tmem88b|320587|transmembrane protein 88B
mm9_v1_chr1_-_20810238_20810392	1.04518	SOX{8,9,10}.p2	X62154|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	BC031700|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	NM_008563|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK146497|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK147065|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	BC020400|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK148006|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK088142|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK133850|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK145563|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)
mm9_v1_chr1_-_178737254_178737254	1.03439	SOX{8,9,10}.p2	NM_001099637|Cep170|545389|centrosomal protein 170
mm9_v1_chr18_-_64676160_64676211	1.03248	SOX{8,9,10}.p2	AK083730|Nars|70223|asparaginyl-tRNA synthetase	AK157244|Nars|70223|asparaginyl-tRNA synthetase	AK172657|Nars|70223|asparaginyl-tRNA synthetase	AK077699|Nars|70223|asparaginyl-tRNA synthetase	NM_001142950|Nars|70223|asparaginyl-tRNA synthetase	NM_027350|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr1_+_166179176_166179227	1.03148	SOX{8,9,10}.p2	AK044825|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF179403|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF418986|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	NM_054087|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF360396|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	BC034659|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF216204|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2
mm9_v1_chr6_-_119146426_119146446	1.03023	SOX{8,9,10}.p2	AK052162|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_009781|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm9_v1_chrX_+_162676903_162676907	1.02997	SOX{8,9,10}.p2	AF254871|Gpm6b|14758|glycoprotein m6b	AF254876|Gpm6b|14758|glycoprotein m6b	AF254877|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr6_-_72908352_72908476	1.02906	SOX{8,9,10}.p2	BC089326|Tmsb10|19240|thymosin, beta 10	BC145877|Tmsb10|19240|thymosin, beta 10	BC145879|Tmsb10|19240|thymosin, beta 10	BC094284|Tmsb10|19240|thymosin, beta 10	BC070416|Tmsb10|19240|thymosin, beta 10	BC048070|Tmsb10|19240|thymosin, beta 10	BC037153|Tmsb10|19240|thymosin, beta 10	BC080312|Tmsb10|19240|thymosin, beta 10	BC099374|Tmsb10|19240|thymosin, beta 10	BC093587|Tmsb10|19240|thymosin, beta 10	BC059777|Tmsb10|19240|thymosin, beta 10	BC092009|Tmsb10|19240|thymosin, beta 10	BC038926|Tmsb10|19240|thymosin, beta 10	AK019232|Tmsb10|19240|thymosin, beta 10	AK003178|Tmsb10|19240|thymosin, beta 10	AK005512|Tmsb10|19240|thymosin, beta 10	AK008557|Tmsb10|19240|thymosin, beta 10	AK012361|Tmsb10|19240|thymosin, beta 10	AK019212|Tmsb10|19240|thymosin, beta 10	AK131711|Tmsb10|19240|thymosin, beta 10	AK161987|Tmsb10|19240|thymosin, beta 10	NM_025284|Tmsb10|19240|thymosin, beta 10
mm9_v1_chr18_+_82754829_82754843	1.02895	SOX{8,9,10}.p2	AK193989|Mbp|17196|myelin basic protein	AK198113|Mbp|17196|myelin basic protein	AK200233|Mbp|17196|myelin basic protein	AK200632|Mbp|17196|myelin basic protein	AK201435|Mbp|17196|myelin basic protein	AK201834|Mbp|17196|myelin basic protein	AK202354|Mbp|17196|myelin basic protein	AK209511|Mbp|17196|myelin basic protein
mm9_v1_chr12_-_103057259_103057314	1.02767	SOX{8,9,10}.p2	AK090129|Fbln5|23876|fibulin 5	NM_011812|Fbln5|23876|fibulin 5	AF112151|Fbln5|23876|fibulin 5	AK157936|Fbln5|23876|fibulin 5	AK159960|Fbln5|23876|fibulin 5	AK159471|Fbln5|23876|fibulin 5
mm9_v1_chr19_-_5510453_5510506	1.0276	SOX{8,9,10}.p2	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr9_+_55889731_55889871	1.0274	SOX{8,9,10}.p2	AK076153|Rcn2|26611|reticulocalbin 2
mm9_v1_chr9_-_117161564_117161606	1.02042	SOX{8,9,10}.p2	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chrX_+_74756540_74756586	1.0183	SOX{8,9,10}.p2	AK036996|Tbl1x|21372|transducin (beta)-like 1 X-linked	AK038674|Tbl1x|21372|transducin (beta)-like 1 X-linked	NM_020601|Tbl1x|21372|transducin (beta)-like 1 X-linked
mm9_v1_chr15_-_103164744_103164757	1.01807	SOX{8,9,10}.p2	BC017644|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr14_-_66539632_66539775	1.00685	SOX{8,9,10}.p2	AK035740|Scara3|219151|scavenger receptor class A, member 3
mm9_v1_chr17_-_85461840_85461859	1.00583	SOX{8,9,10}.p2	AK019367|Prepl|213760|prolyl endopeptidase-like
mm9_v1_chrX_+_160346948_160347157	1.00154	SOX{8,9,10}.p2	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr2_-_152656236_152656402	0.998615	SOX{8,9,10}.p2	L35049|Bcl2l1|12048|BCL2-like 1	U51279|Bcl2l1|12048|BCL2-like 1	AK172250|Bcl2l1|12048|BCL2-like 1	U51277|Bcl2l1|12048|BCL2-like 1	AK146461|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr4_-_134108044_134108129	0.992869	SOX{8,9,10}.p2	NM_029100|Sepn1|74777|selenoprotein N, 1
mm9_v1_chr15_-_77473707_77473715	0.991925	SOX{8,9,10}.p2	AY662646|Apol11b|328563|apolipoprotein L 11b	AK039744|Apol11b|328563|apolipoprotein L 11b	NM_001143686|Apol11b|328563|apolipoprotein L 11b
mm9_v1_chr15_-_10643273_10643318	0.989318	SOX{8,9,10}.p2	AF274866|Rai14|75646|retinoic acid induced 14	BC052458|Rai14|75646|retinoic acid induced 14	NM_030690|Rai14|75646|retinoic acid induced 14	AK006172|Rai14|75646|retinoic acid induced 14
mm9_v1_chrX_-_96085778_96085963	0.981815	SOX{8,9,10}.p2	AK046214|Ophn1|94190|oligophrenin 1	AK087469|Ophn1|94190|oligophrenin 1	AK028822|Ophn1|94190|oligophrenin 1	AK077982|Ophn1|94190|oligophrenin 1	AK032500|Ophn1|94190|oligophrenin 1	AK082551|Ophn1|94190|oligophrenin 1
mm9_v1_chr10_-_30375572_30375672	0.980217	SOX{8,9,10}.p2	BC080742|Ncoa7|211329|nuclear receptor coactivator 7	AK033503|Ncoa7|211329|nuclear receptor coactivator 7	AK171679|Ncoa7|211329|nuclear receptor coactivator 7	BC058572|Ncoa7|211329|nuclear receptor coactivator 7	BC080670|Ncoa7|211329|nuclear receptor coactivator 7	BC049997|Ncoa7|211329|nuclear receptor coactivator 7	AK165098|Ncoa7|211329|nuclear receptor coactivator 7	AK042369|Ncoa7|211329|nuclear receptor coactivator 7	EF602028|Ncoa7|211329|nuclear receptor coactivator 7	NM_001111267|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr5_+_30969259_30969346	0.980178	SOX{8,9,10}.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr2_+_120302644_120302680	0.979547	SOX{8,9,10}.p2	BC090661|Capn3|12335|calpain 3	NM_001109761|Capn3|12335|calpain 3	AF091998|Capn3|12335|calpain 3
mm9_v1_chr5_+_34064954_34065046	0.979072	SOX{8,9,10}.p2	NM_001163216|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163217|Fgfr3|14184|fibroblast growth factor receptor 3	S56291|Fgfr3|14184|fibroblast growth factor receptor 3	AF024638|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr2_+_139996381_139996403	0.977863	SOX{8,9,10}.p2	NM_027093|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene
mm9_v1_chr8_-_114457667_114457780	0.976054	SOX{8,9,10}.p2	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr14_-_67690829_67691018	0.975806	SOX{8,9,10}.p2	AK201086|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC022916|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr8_+_34842810_34842810	0.975458	SOX{8,9,10}.p2	NM_001167922|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr8_-_87297283_87297318	0.975288	SOX{8,9,10}.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chr12_+_101348348_101348406	0.973773	SOX{8,9,10}.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr13_+_83803830_83803849	0.966404	SOX{8,9,10}.p2	AK044589|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr9_+_6168583_6168611	0.963779	SOX{8,9,10}.p2	AK141551|Pdgfd|71785|platelet-derived growth factor, D polypeptide	AK003359|Pdgfd|71785|platelet-derived growth factor, D polypeptide	NM_027924|Pdgfd|71785|platelet-derived growth factor, D polypeptide
mm9_v1_chr2_-_127618207_127618237	0.963745	SOX{8,9,10}.p2	AK165423|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC048556|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK008527|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK027942|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116797|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116799|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK005218|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene
mm9_v1_chr12_+_30213224_30213265	0.962319	SOX{8,9,10}.p2	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr1_-_173152548_173152594	0.959656	SOX{8,9,10}.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr8_-_87461220_87461246	0.954389	SOX{8,9,10}.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr6_+_112223751_112223811	0.951126	SOX{8,9,10}.p2	AK075847|Lmcd1|30937|LIM and cysteine-rich domains 1	NM_144799|Lmcd1|30937|LIM and cysteine-rich domains 1	AK159946|Lmcd1|30937|LIM and cysteine-rich domains 1	BC019124|Lmcd1|30937|LIM and cysteine-rich domains 1
mm9_v1_chr17_-_36046961_36047023	0.949003	SOX{8,9,10}.p2	AK049682|Atat1|73242|alpha tubulin acetyltransferase 1	AK014265|Atat1|73242|alpha tubulin acetyltransferase 1	AK011750|Atat1|73242|alpha tubulin acetyltransferase 1	AK034725|Atat1|73242|alpha tubulin acetyltransferase 1	AK133694|Atat1|73242|alpha tubulin acetyltransferase 1	BC030669|Atat1|73242|alpha tubulin acetyltransferase 1	AK011350|Atat1|73242|alpha tubulin acetyltransferase 1	BC028847|Atat1|73242|alpha tubulin acetyltransferase 1	AK011838|Atat1|73242|alpha tubulin acetyltransferase 1	AK028297|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142744|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142745|Atat1|73242|alpha tubulin acetyltransferase 1	NM_028476|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr7_-_133940879_133940922	0.948312	SOX{8,9,10}.p2	X03797|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr8_+_73051900_73051908	0.940203	SOX{8,9,10}.p2	AK040736|Fkbp8|14232|FK506 binding protein 8	AK088739|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr3_+_95238342_95238357	0.94006	SOX{8,9,10}.p2	BC012870|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	AK145415|Arnt|11863|aryl hydrocarbon receptor nuclear translocator
mm9_v1_chr4_-_70195870_70195917	0.935935	SOX{8,9,10}.p2	BC088994|Megf9|230316|multiple EGF-like-domains 9	BC138128|Megf9|230316|multiple EGF-like-domains 9	BC138129|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr19_+_21347181_21347203	0.934238	SOX{8,9,10}.p2	AF062071|Zfand5|22682|zinc finger, AN1-type domain 5	BC107566|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr16_-_20302299_20302462	0.933803	SOX{8,9,10}.p2	AK039142|Parl|381038|presenilin associated, rhomboid-like	BC083153|Parl|381038|presenilin associated, rhomboid-like	AK151652|Parl|381038|presenilin associated, rhomboid-like	NM_001005767|Parl|381038|presenilin associated, rhomboid-like	AK150980|Parl|381038|presenilin associated, rhomboid-like	AK207637|Parl|381038|presenilin associated, rhomboid-like
mm9_v1_chr3_-_80606641_80606686	0.933561	SOX{8,9,10}.p2	AK044574|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK134572|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK086614|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK043490|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK141525|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr1_+_193645351_193645467	0.933467	SOX{8,9,10}.p2	NM_010892|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK147072|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK077627|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK169330|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK164467|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC057576|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC011316|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK170179|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK171277|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK171387|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AF007247|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	U95610|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC010302|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AF013166|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2
mm9_v1_chr5_+_13399301_13399308	0.928283	SOX{8,9,10}.p2	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr5_+_19413335_19413335	0.920619	SOX{8,9,10}.p2	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr19_+_53385022_53385154	0.919476	SOX{8,9,10}.p2	D31824|Mxi1|17859|Max interacting protein 1
mm9_v1_chr16_+_48283847_48283930	0.917465	SOX{8,9,10}.p2	AK033197|Dppa4|73693|developmental pluripotency associated 4	NM_001018002|Dppa4|73693|developmental pluripotency associated 4	NM_028610|Dppa4|73693|developmental pluripotency associated 4	AK010753|Dppa4|73693|developmental pluripotency associated 4	BC064754|Dppa4|73693|developmental pluripotency associated 4	AF490348|Dppa4|73693|developmental pluripotency associated 4
mm9_v1_chr17_-_56615875_56615935	0.910712	SOX{8,9,10}.p2	NM_011218|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr7_-_52125157_52125184	0.910558	SOX{8,9,10}.p2	BC024632|Ptov1|84113|prostate tumor over expressed gene 1	NM_133949|Ptov1|84113|prostate tumor over expressed gene 1
mm9_v1_chr5_+_130293218_130293390	0.908518	SOX{8,9,10}.p2	AK159975|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK147130|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167180|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK166795|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167007|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK168940|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167669|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK159785|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	NM_009838|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	Z31557|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	BC055043|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK145522|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167164|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK150977|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK159354|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK160067|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK164312|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK165612|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK166749|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167851|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK134428|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK077916|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK166870|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK166887|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK166929|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167076|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167307|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167082|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK167994|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK168065|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	BC069917|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK169033|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	BC094352|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)	AK216762|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)
mm9_v1_chr3_-_57496415_57496458	0.907848	SOX{8,9,10}.p2	AK134766|Gm410|242037|predicted gene 410	AK138483|Gm410|242037|predicted gene 410	NM_001033349|Gm410|242037|predicted gene 410
mm9_v1_chr18_+_37170365_37170627	0.906704	SOX{8,9,10}.p2	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr1_+_55462764_55462802	0.90663	SOX{8,9,10}.p2	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr16_+_45093784_45093803	0.906408	SOX{8,9,10}.p2	AK144183|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr12_+_109572514_109572610	0.90632	SOX{8,9,10}.p2	BC018307|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AK140740|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AF094479|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	NM_010010|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1
mm9_v1_chr12_-_71448300_71448379	0.906074	SOX{8,9,10}.p2	AK129109|Trim9|94090|tripartite motif-containing 9	AK049907|Trim9|94090|tripartite motif-containing 9	AK035807|Trim9|94090|tripartite motif-containing 9	AK028280|Trim9|94090|tripartite motif-containing 9	AK048875|Trim9|94090|tripartite motif-containing 9	AK163123|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr3_-_88893885_88893966	0.905009	SOX{8,9,10}.p2	AK170210|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083808|Rusc1|72296|RUN and SH3 domain containing 1	AK170012|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chrX_-_92361778_92361824	0.904972	SOX{8,9,10}.p2	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr12_+_3365147_3365223	0.90117	SOX{8,9,10}.p2	AK133649|Kif3c|16570|kinesin family member 3C	BC053053|Kif3c|16570|kinesin family member 3C
mm9_v1_chr1_-_42751652_42751673	0.899301	SOX{8,9,10}.p2	BC094545|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK011437|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK019154|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK048630|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr9_+_64025147_64025147	0.899064	SOX{8,9,10}.p2	AJ844648|Rpl4|67891|ribosomal protein L4
mm9_v1_chr6_-_124779408_124779497	0.89846	SOX{8,9,10}.p2	AK186740|Usp5|22225|ubiquitin specific peptidase 5 (isopeptidase T)	BC066993|Usp5|22225|ubiquitin specific peptidase 5 (isopeptidase T)	AK154008|Usp5|22225|ubiquitin specific peptidase 5 (isopeptidase T)	NM_013700|Usp5|22225|ubiquitin specific peptidase 5 (isopeptidase T)
mm9_v1_chr3_-_104855832_104856063	0.897266	SOX{8,9,10}.p2	BC003236|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK145085|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK051259|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK030438|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK129359|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163332|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163333|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK029901|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_030249|Cttnbp2nl|80281|CTTNBP2 N-terminal like
mm9_v1_chr8_-_109417431_109417531	0.892878	SOX{8,9,10}.p2	AK030924|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK165993|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	NM_145412|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK087721|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK088257|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
mm9_v1_chr17_+_53618611_53618848	0.883128	SOX{8,9,10}.p2	AK036011|Rab5a|271457|RAB5A, member RAS oncogene family	BC004842|Rab5a|271457|RAB5A, member RAS oncogene family	AK010495|Rab5a|271457|RAB5A, member RAS oncogene family	AK150405|Rab5a|271457|RAB5A, member RAS oncogene family	AK002631|Rab5a|271457|RAB5A, member RAS oncogene family	AK150296|Rab5a|271457|RAB5A, member RAS oncogene family	AK151066|Rab5a|271457|RAB5A, member RAS oncogene family	AK153131|Rab5a|271457|RAB5A, member RAS oncogene family	AK159706|Rab5a|271457|RAB5A, member RAS oncogene family	AK150346|Rab5a|271457|RAB5A, member RAS oncogene family	BC034370|Rab5a|271457|RAB5A, member RAS oncogene family	AK008198|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr2_+_151969288_151969344	0.880734	SOX{8,9,10}.p2	U18658|Tcf15|21407|transcription factor 15	BC027533|Tcf15|21407|transcription factor 15	NM_009328|Tcf15|21407|transcription factor 15
mm9_v1_chr4_-_73596693_73596749	0.879989	SOX{8,9,10}.p2	BC115483|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	BC115484|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009124|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009097|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027104|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027981|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene
mm9_v1_chr15_+_73578455_73578455	0.87998	SOX{8,9,10}.p2	AK147489|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_008975|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr1_+_43245927_43245978	0.878256	SOX{8,9,10}.p2	AK088551|Rpl29|19944|ribosomal protein L29	BC094039|Rpl29|19944|ribosomal protein L29	BC096575|Rpl29|19944|ribosomal protein L29	BC002062|Rpl29|19944|ribosomal protein L29	BC019179|Rpl29|19944|ribosomal protein L29	BC082292|Rpl29|19944|ribosomal protein L29	L08651|Rpl29|19944|ribosomal protein L29
mm9_v1_chr10_-_8605668_8605870	0.876811	SOX{8,9,10}.p2	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr4_-_77857594_77857662	0.87402	SOX{8,9,10}.p2	AK086248|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr8_+_91220965_91221031	0.873432	SOX{8,9,10}.p2	AK147426|Cyld|74256|cylindromatosis (turban tumor syndrome)	BC042438|Cyld|74256|cylindromatosis (turban tumor syndrome)	AK039054|Cyld|74256|cylindromatosis (turban tumor syndrome)
mm9_v1_chr2_-_84555162_84555500	0.872475	SOX{8,9,10}.p2	BC065155|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK082513|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK145086|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK173251|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AY894891|Zdhhc5|228136|zinc finger, DHHC domain containing 5	NM_144887|Zdhhc5|228136|zinc finger, DHHC domain containing 5
mm9_v1_chr13_-_107812106_107812216	0.869601	SOX{8,9,10}.p2	AK037037|Kif2a|16563|kinesin family member 2A	BC006803|Kif2a|16563|kinesin family member 2A	D12644|Kif2a|16563|kinesin family member 2A	NM_001145779|Kif2a|16563|kinesin family member 2A	NM_008442|Kif2a|16563|kinesin family member 2A
mm9_v1_chr18_+_42671130_42671146	0.868958	SOX{8,9,10}.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr16_+_8470854_8470905	0.865916	SOX{8,9,10}.p2	AK136614|BC024814|239706|cDNA sequence BC024814	AK089212|BC024814|239706|cDNA sequence BC024814	BC024814|BC024814|239706|cDNA sequence BC024814	NM_146247|BC024814|239706|cDNA sequence BC024814
mm9_v1_chr9_+_21903702_21903764	0.865545	SOX{8,9,10}.p2	Z19542|Cnn1|12797|calponin 1	AK035548|Cnn1|12797|calponin 1	BC138863|Cnn1|12797|calponin 1	BC138864|Cnn1|12797|calponin 1	BC145446|Cnn1|12797|calponin 1
mm9_v1_chr9_-_117539030_117539030	0.863656	SOX{8,9,10}.p2	AK046197|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172121|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr14_+_73542316_73542336	0.862547	SOX{8,9,10}.p2	NM_001170694|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	NM_134083|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr8_+_72839642_72839751	0.858402	SOX{8,9,10}.p2	AK053885|Lass1|93898|LAG1 homolog, ceramide synthase 1	NM_001163282|Gdf1|14559|growth differentiation factor 1	NM_138647|Lass1|93898|LAG1 homolog, ceramide synthase 1	M62301|Gdf1|14559|growth differentiation factor 1	AK162823|Gdf1|14559|growth differentiation factor 1	BC056973|Gdf1|14559|growth differentiation factor 1	BC094351|Gdf1|14559|growth differentiation factor 1	BC132318|Lass1|93898|LAG1 homolog, ceramide synthase 1
mm9_v1_chr19_-_37281951_37281997	0.855777	SOX{8,9,10}.p2	AB093274|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK044639|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK161513|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr8_+_72853663_72853663	0.855597	SOX{8,9,10}.p2	M57639|Gdf1|14559|growth differentiation factor 1	NM_008107|Gdf1|14559|growth differentiation factor 1
mm9_v1_chr2_+_84820615_84820637	0.855324	SOX{8,9,10}.p2	AK156715|Prg2|19074|proteoglycan 2, bone marrow	AK010901|Prg2|19074|proteoglycan 2, bone marrow	NM_008920|Prg2|19074|proteoglycan 2, bone marrow	BC109348|Prg2|19074|proteoglycan 2, bone marrow
mm9_v1_chr3_-_142054771_142054814	0.854351	SOX{8,9,10}.p2	DQ177283|Pdlim5|56376|PDZ and LIM domain 5	HM369794|Pdlim5|56376|PDZ and LIM domain 5	HM369795|Pdlim5|56376|PDZ and LIM domain 5	HM369796|Pdlim5|56376|PDZ and LIM domain 5	HM369797|Pdlim5|56376|PDZ and LIM domain 5	HM369798|Pdlim5|56376|PDZ and LIM domain 5	NM_001190857|Pdlim5|56376|PDZ and LIM domain 5	NM_022554|Pdlim5|56376|PDZ and LIM domain 5	AB016587|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr7_+_31076771_31076772	0.850146	SOX{8,9,10}.p2	NM_001081114|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr13_-_100286446_100286519	0.846273	SOX{8,9,10}.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr4_+_83063621_83063661	0.84407	SOX{8,9,10}.p2	AK049933|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK016168|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK007563|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK010932|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK031870|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK031924|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	BC048713|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	NM_029949|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK019863|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3
mm9_v1_chr10_+_77505031_77505031	0.840984	SOX{8,9,10}.p2	EF051624|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	NM_001081695|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like
mm9_v1_chr4_+_42668782_42668814	0.829912	SOX{8,9,10}.p2	AK005520|Gm13306|100039863|predicted gene 13306	NM_001164046|Gm13306|100039863|predicted gene 13306	BC028511|Gm13306|100039863|predicted gene 13306
mm9_v1_chr8_+_74092790_74092825	0.82874	SOX{8,9,10}.p2	BC028937|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1	NM_011977|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1
mm9_v1_chr8_-_74009902_74009965	0.828643	SOX{8,9,10}.p2	NM_001164679|Ano8|382014|anoctamin 8
mm9_v1_chr15_+_73578771_73578842	0.823255	SOX{8,9,10}.p2	AK143702|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK172192|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK014601|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr12_-_110131406_110131420	0.821555	SOX{8,9,10}.p2	BC003450|Wars|22375|tryptophanyl-tRNA synthetase	AK004541|Wars|22375|tryptophanyl-tRNA synthetase	NM_001164488|Wars|22375|tryptophanyl-tRNA synthetase	NM_011710|Wars|22375|tryptophanyl-tRNA synthetase
mm9_v1_chr10_+_79612410_79612424	0.820284	SOX{8,9,10}.p2	AK154535|Midn|59090|midnolin
mm9_v1_chr15_+_78778153_78778153	0.819036	SOX{8,9,10}.p2	DQ228000|Triobp|110253|TRIO and F-actin binding protein	DQ228001|Triobp|110253|TRIO and F-actin binding protein	DQ228002|Triobp|110253|TRIO and F-actin binding protein	NM_001039155|Triobp|110253|TRIO and F-actin binding protein	NM_001039156|Triobp|110253|TRIO and F-actin binding protein	NM_138579|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr16_-_38525341_38525620	0.818225	SOX{8,9,10}.p2	AK076379|Poglut1|224143|protein O-glucosyltransferase 1
mm9_v1_chr7_-_54175214_54175352	0.816878	SOX{8,9,10}.p2	AK185554|Tsg101|22088|tumor susceptibility gene 101	AK179695|Tsg101|22088|tumor susceptibility gene 101	AK014049|Tsg101|22088|tumor susceptibility gene 101	U52945|Tsg101|22088|tumor susceptibility gene 101	BC085308|Tsg101|22088|tumor susceptibility gene 101	AK146602|Tsg101|22088|tumor susceptibility gene 101	NM_021884|Tsg101|22088|tumor susceptibility gene 101	BC005424|Tsg101|22088|tumor susceptibility gene 101	AK146229|Tsg101|22088|tumor susceptibility gene 101	AK150369|Tsg101|22088|tumor susceptibility gene 101
mm9_v1_chr4_+_155383006_155383012	0.814585	SOX{8,9,10}.p2	AK207454|Sdf4|20318|stromal cell derived factor 4	AK178167|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr16_-_85056592_85056771	0.812825	SOX{8,9,10}.p2	M24397|App|11820|amyloid beta (A4) precursor protein	AK161854|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_+_125860377_125860409	0.810881	SOX{8,9,10}.p2	AK037172|Fgf7|14178|fibroblast growth factor 7	NM_008008|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chrX_+_55283804_55283819	0.808387	SOX{8,9,10}.p2	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr4_-_155574875_155574926	0.806452	SOX{8,9,10}.p2	BC083156|Isg15|100038882|ISG15 ubiquitin-like modifier	BC109346|Isg15|100038882|ISG15 ubiquitin-like modifier	BC031424|Isg15|100038882|ISG15 ubiquitin-like modifier	X56602|Isg15|100038882|ISG15 ubiquitin-like modifier	NM_015783|Isg15|100038882|ISG15 ubiquitin-like modifier
mm9_v1_chr10_+_87323855_87324094	0.804273	SOX{8,9,10}.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr11_-_30168142_30168145	0.801631	SOX{8,9,10}.p2	BC092544|Spnb2|20742|spectrin beta 2
mm9_v1_chr10_+_79689342_79689484	0.801537	SOX{8,9,10}.p2	AK158750|Mum1|68114|melanoma associated antigen (mutated) 1	NM_023431|Mum1|68114|melanoma associated antigen (mutated) 1	AK159972|Mum1|68114|melanoma associated antigen (mutated) 1	AK170459|Mum1|68114|melanoma associated antigen (mutated) 1	AK154610|Mum1|68114|melanoma associated antigen (mutated) 1
mm9_v1_chr4_+_73659506_73659598	0.79792	SOX{8,9,10}.p2	AK079349|Frmd3|242506|FERM domain containing 3	NM_001163732|Frmd3|242506|FERM domain containing 3	NM_172869|Frmd3|242506|FERM domain containing 3	AK034956|Frmd3|242506|FERM domain containing 3	AK048561|Frmd3|242506|FERM domain containing 3	BC118964|Frmd3|242506|FERM domain containing 3	BC112419|Frmd3|242506|FERM domain containing 3	BC113795|Frmd3|242506|FERM domain containing 3
mm9_v1_chr11_+_105898183_105898284	0.796307	SOX{8,9,10}.p2	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr8_+_74092759_74092780	0.79384	SOX{8,9,10}.p2	AK040923|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1
mm9_v1_chr14_+_84843366_84843370	0.793637	SOX{8,9,10}.p2	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr4_-_11181388_11181409	0.792066	SOX{8,9,10}.p2	AK140829|Ints8|72656|integrator complex subunit 8	NM_001159595|Ints8|72656|integrator complex subunit 8	NM_178112|Ints8|72656|integrator complex subunit 8
mm9_v1_chr16_-_92466335_92466428	0.790862	SOX{8,9,10}.p2	AY325904|Rcan1|54720|regulator of calcineurin 1	AK146764|Rcan1|54720|regulator of calcineurin 1	NM_001081549|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr2_-_80287349_80287399	0.789851	SOX{8,9,10}.p2	U88568|Frzb|20378|frizzled-related protein	BC016884|Frzb|20378|frizzled-related protein
mm9_v1_chr8_-_107995282_107995321	0.789809	SOX{8,9,10}.p2	AK009771|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK012437|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK155018|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK160507|Tppp3|67971|tubulin polymerization-promoting protein family member 3	NM_026481|Tppp3|67971|tubulin polymerization-promoting protein family member 3
mm9_v1_chr4_+_34011567_34011625	0.785642	SOX{8,9,10}.p2	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr11_+_70470701_70470714	0.785363	SOX{8,9,10}.p2	X70182|Eno3|13808|enolase 3, beta muscle	AK002485|Eno3|13808|enolase 3, beta muscle	NM_001136062|Eno3|13808|enolase 3, beta muscle	X57747|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr2_-_173102033_173102038	0.784489	SOX{8,9,10}.p2	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr15_-_83341285_83341349	0.783336	SOX{8,9,10}.p2	BC010510|Ttll1|319953|tubulin tyrosine ligase-like 1	AK084005|Ttll1|319953|tubulin tyrosine ligase-like 1	AK140472|Ttll1|319953|tubulin tyrosine ligase-like 1	AK031917|Ttll1|319953|tubulin tyrosine ligase-like 1	AK168786|Ttll1|319953|tubulin tyrosine ligase-like 1	AK047046|Ttll1|319953|tubulin tyrosine ligase-like 1	AK169150|Ttll1|319953|tubulin tyrosine ligase-like 1	NM_178869|Ttll1|319953|tubulin tyrosine ligase-like 1
mm9_v1_chr7_-_25772525_25772570	0.781468	SOX{8,9,10}.p2	BC040512|Atp1a3|232975|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm9_v1_chr8_+_77633426_77633531	0.781173	SOX{8,9,10}.p2	BC090645|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	NM_008566|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	AK033196|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	AK133826|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	AK051795|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	BC094416|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	D26090|Mcm5|17218|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)
mm9_v1_chr4_+_42028814_42028846	0.7811	SOX{8,9,10}.p2	AK005520|Gm13306|100039863|predicted gene 13306	NM_001164046|Gm13306|100039863|predicted gene 13306	BC028511|Gm13306|100039863|predicted gene 13306
mm9_v1_chr8_-_108089811_108089973	0.777717	SOX{8,9,10}.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr15_-_36724292_36724292	0.776104	SOX{8,9,10}.p2	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr11_+_23156022_23156046	0.773987	SOX{8,9,10}.p2	BC062912|Xpo1|103573|exportin 1, CRM1 homolog (yeast)	NM_001035226|Xpo1|103573|exportin 1, CRM1 homolog (yeast)	NM_134014|Xpo1|103573|exportin 1, CRM1 homolog (yeast)
mm9_v1_chr4_+_41412148_41412191	0.772076	SOX{8,9,10}.p2	AK132532|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	NM_025539|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	AK009933|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	AK018771|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm9_v1_chr16_+_13780778_13780842	0.77056	SOX{8,9,10}.p2	NM_001039521|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK021410|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK165676|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK080680|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	BC138774|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	BC138776|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK080397|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)
mm9_v1_chr13_-_76081244_76081314	0.769518	SOX{8,9,10}.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr1_-_33871261_33871282	0.768962	SOX{8,9,10}.p2	AK122541|Zfp451|98403|zinc finger protein 451	BC019546|Zfp451|98403|zinc finger protein 451	AK030088|Zfp451|98403|zinc finger protein 451	NM_133817|Zfp451|98403|zinc finger protein 451
mm9_v1_chr12_+_109843975_109843976	0.767823	SOX{8,9,10}.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr10_-_75807976_75808035	0.767129	SOX{8,9,10}.p2	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr16_-_45408997_45409165	0.766921	SOX{8,9,10}.p2	AF004023|Cd200|17470|CD200 antigen	BC019172|Cd200|17470|CD200 antigen	AK009051|2300009N04Rik|69477|RIKEN cDNA 2300009N04 gene	BC051984|Cd200|17470|CD200 antigen	AK164478|Cd200|17470|CD200 antigen	BC054759|Cd200|17470|CD200 antigen	AK131640|2300009N04Rik|69477|RIKEN cDNA 2300009N04 gene	AK148308|Cd200|17470|CD200 antigen	NM_010818|Cd200|17470|CD200 antigen
mm9_v1_chr18_+_69504145_69504185	0.766	SOX{8,9,10}.p2	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr5_+_43907004_43907024	0.765859	SOX{8,9,10}.p2	AK078818|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7
mm9_v1_chr4_+_94406190_94406316	0.76547	SOX{8,9,10}.p2	X67553|Tek|21687|endothelial-specific receptor tyrosine kinase	X71426|Tek|21687|endothelial-specific receptor tyrosine kinase	S67051|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chrX_+_97821403_97821491	0.765233	SOX{8,9,10}.p2	NM_008446|Kif4|16571|kinesin family member 4	AK084837|Kif4|16571|kinesin family member 4	AK135179|Kif4|16571|kinesin family member 4	BC050946|Kif4|16571|kinesin family member 4	BC054537|Kif4|16571|kinesin family member 4	AK171938|Kif4|16571|kinesin family member 4
mm9_v1_chr11_-_109472638_109472693	0.765149	SOX{8,9,10}.p2	BC024883|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	BC024811|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr3_+_95238406_95238462	0.764063	SOX{8,9,10}.p2	AK141362|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	U10325|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	U14333|Arnt|11863|aryl hydrocarbon receptor nuclear translocator
mm9_v1_chr16_-_31274947_31275377	0.763612	SOX{8,9,10}.p2	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chr14_+_60997104_60997126	0.762345	SOX{8,9,10}.p2	NM_001164705|Fam123a|72125|family with sequence similarity 123, member A	NM_028113|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr18_-_13100228_13100349	0.759446	SOX{8,9,10}.p2	AY536214|Osbpl1a|64291|oxysterol binding protein-like 1A	NM_207530|Osbpl1a|64291|oxysterol binding protein-like 1A	BC031735|Osbpl1a|64291|oxysterol binding protein-like 1A	AK090069|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr14_+_73542347_73542351	0.757822	SOX{8,9,10}.p2	AK031242|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	AK031248|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr3_-_144232768_144232936	0.757078	SOX{8,9,10}.p2	AF169243|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AF060178|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	BC059008|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr11_-_30168153_30168187	0.75504	SOX{8,9,10}.p2	AK137356|Spnb2|20742|spectrin beta 2
mm9_v1_chr5_-_75098910_75098927	0.754839	SOX{8,9,10}.p2	AF034745|Lnx1|16924|ligand of numb-protein X 1	NM_001159577|Lnx1|16924|ligand of numb-protein X 1
mm9_v1_chr12_-_52792851_52792915	0.754471	SOX{8,9,10}.p2	BC138055|Strn3|94186|striatin, calmodulin binding protein 3	BC145127|Strn3|94186|striatin, calmodulin binding protein 3	AF307777|Strn3|94186|striatin, calmodulin binding protein 3	EF685152|Strn3|94186|striatin, calmodulin binding protein 3	AK139183|Strn3|94186|striatin, calmodulin binding protein 3	AK140447|Strn3|94186|striatin, calmodulin binding protein 3	AK164967|Strn3|94186|striatin, calmodulin binding protein 3	NM_001172098|Strn3|94186|striatin, calmodulin binding protein 3	NM_052973|Strn3|94186|striatin, calmodulin binding protein 3
mm9_v1_chr11_+_121121273_121121393	0.752185	SOX{8,9,10}.p2	EU882160|Foxk2|68837|forkhead box K2	NM_001080932|Foxk2|68837|forkhead box K2	AK139325|Foxk2|68837|forkhead box K2
mm9_v1_chr6_-_31513817_31513936	0.751435	SOX{8,9,10}.p2	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr7_+_119166928_119167032	0.750068	SOX{8,9,10}.p2	AK151051|Usp47|74996|ubiquitin specific peptidase 47	NM_133758|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chrX_+_151696991_151697138	0.749124	SOX{8,9,10}.p2	AK168713|Acot9|56360|acyl-CoA thioesterase 9	NM_019736|Acot9|56360|acyl-CoA thioesterase 9	AK076513|Acot9|56360|acyl-CoA thioesterase 9	BC021763|Acot9|56360|acyl-CoA thioesterase 9	AK002892|Acot9|56360|acyl-CoA thioesterase 9	AK009717|Acot9|56360|acyl-CoA thioesterase 9	AK088082|Acot9|56360|acyl-CoA thioesterase 9	AK170876|Acot9|56360|acyl-CoA thioesterase 9	AJ238893|Acot9|56360|acyl-CoA thioesterase 9	AB028898|Acot9|56360|acyl-CoA thioesterase 9
mm9_v1_chr4_-_40226373_40226477	0.745748	SOX{8,9,10}.p2	BC147062|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	BC147063|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	AK146762|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	NM_001033305|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6
mm9_v1_chr19_+_46150352_46150506	0.744134	SOX{8,9,10}.p2	NM_001039351|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_001039352|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_001039353|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_053086|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK166753|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK014336|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK034817|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK147118|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK029150|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK150332|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK151031|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK152941|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	BC003244|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1
mm9_v1_chr14_-_27489119_27489164	0.740647	SOX{8,9,10}.p2	AK167708|Pde12|211948|phosphodiesterase 12	AK088843|Pde12|211948|phosphodiesterase 12	AK143567|Pde12|211948|phosphodiesterase 12	AK082947|Pde12|211948|phosphodiesterase 12	AK155088|Pde12|211948|phosphodiesterase 12
mm9_v1_chr1_+_180168023_180168042	0.740558	SOX{8,9,10}.p2	AK216786|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr15_-_98781060_98781163	0.740025	SOX{8,9,10}.p2	M28729|Tuba1a|22142|tubulin, alpha 1A	AK201449|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr5_+_116295664_116295664	0.738175	SOX{8,9,10}.p2	NM_007708|Cit|12704|citron
mm9_v1_chr3_+_137004041_137004080	0.737466	SOX{8,9,10}.p2	NM_001163522|Emcn|59308|endomucin	NM_016885|Emcn|59308|endomucin	AK145825|Emcn|59308|endomucin	AK002616|Emcn|59308|endomucin	AK029348|Emcn|59308|endomucin	BC003706|Emcn|59308|endomucin
mm9_v1_chr6_-_124691022_124691109	0.733955	SOX{8,9,10}.p2	AK009591|Grcc10|14790|gene rich cluster, C10 gene	BC005683|Grcc10|14790|gene rich cluster, C10 gene	AK013899|Grcc10|14790|gene rich cluster, C10 gene	NM_013535|Grcc10|14790|gene rich cluster, C10 gene
mm9_v1_chr8_-_72149443_72149460	0.733303	SOX{8,9,10}.p2	AK079745|Zfp868|234362|zinc finger protein 868	AK168306|Zfp868|234362|zinc finger protein 868	NM_172754|Zfp868|234362|zinc finger protein 868
mm9_v1_chr10_+_79516781_79516793	0.732573	SOX{8,9,10}.p2	AB072797|Gpx4|625249|glutathione peroxidase 4	NM_001037741|Gpx4|625249|glutathione peroxidase 4	AF274027|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chr5_-_135096716_135096886	0.728666	SOX{8,9,10}.p2	BC023337|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr11_-_121249452_121249486	0.727639	SOX{8,9,10}.p2	AB232638|Rab40b|217371|Rab40b, member RAS oncogene family	AF425643|Rab40b|217371|Rab40b, member RAS oncogene family
mm9_v1_chr9_-_58160769_58160855	0.726711	SOX{8,9,10}.p2	AF357006|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chrX_+_90920450_90920749	0.725209	SOX{8,9,10}.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr4_-_115796249_115796294	0.722808	SOX{8,9,10}.p2	AK030753|Rad54l|19366|RAD54 like (S. cerevisiae)	BC021643|Rad54l|19366|RAD54 like (S. cerevisiae)	AK161644|Rad54l|19366|RAD54 like (S. cerevisiae)	AK088876|Rad54l|19366|RAD54 like (S. cerevisiae)	NM_001122958|Rad54l|19366|RAD54 like (S. cerevisiae)	NM_009015|Rad54l|19366|RAD54 like (S. cerevisiae)	AK017045|Rad54l|19366|RAD54 like (S. cerevisiae)	NM_001122959|Rad54l|19366|RAD54 like (S. cerevisiae)
mm9_v1_chr11_-_100355280_100355392	0.718415	SOX{8,9,10}.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr3_-_94863548_94863564	0.716501	SOX{8,9,10}.p2	AK052310|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr19_-_6015778_6015825	0.715607	SOX{8,9,10}.p2	AK171405|Capn1|12333|calpain 1	NM_001110504|Capn1|12333|calpain 1
mm9_v1_chr18_+_32584590_32584594	0.714819	SOX{8,9,10}.p2	AK184020|Bin1|30948|bridging integrator 1	AK191982|Bin1|30948|bridging integrator 1
mm9_v1_chr12_-_110132316_110132383	0.713156	SOX{8,9,10}.p2	BC046232|Wars|22375|tryptophanyl-tRNA synthetase	AK183530|Wars|22375|tryptophanyl-tRNA synthetase	AK150090|Wars|22375|tryptophanyl-tRNA synthetase	AK150267|Wars|22375|tryptophanyl-tRNA synthetase	AK152966|Wars|22375|tryptophanyl-tRNA synthetase	AK153337|Wars|22375|tryptophanyl-tRNA synthetase	NM_001164314|Wars|22375|tryptophanyl-tRNA synthetase
mm9_v1_chr11_+_87405628_87405720	0.711105	SOX{8,9,10}.p2	AF262986|Mtmr4|170749|myotubularin related protein 4	NM_133215|Mtmr4|170749|myotubularin related protein 4	BC058091|Mtmr4|170749|myotubularin related protein 4	BC058364|Mtmr4|170749|myotubularin related protein 4
mm9_v1_chr18_+_36526187_36526274	0.711041	SOX{8,9,10}.p2	AK003470|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene
mm9_v1_chr2_+_13500271_13500328	0.710733	SOX{8,9,10}.p2	AK181650|Vim|22352|vimentin	AK196009|Vim|22352|vimentin	AK197870|Vim|22352|vimentin	AK203908|Vim|22352|vimentin
mm9_v1_chr11_+_86940545_86940631	0.710663	SOX{8,9,10}.p2	AK140822|Trim37|68729|tripartite motif-containing 37	BC058678|Trim37|68729|tripartite motif-containing 37	NM_197987|Trim37|68729|tripartite motif-containing 37	BC078416|Trim37|68729|tripartite motif-containing 37	BC059070|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr9_-_55983967_55984081	0.706683	SOX{8,9,10}.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr4_-_42349738_42349770	0.705586	SOX{8,9,10}.p2	BC028511|Gm13306|100039863|predicted gene 13306	AK005520|Gm13306|100039863|predicted gene 13306	NM_001164046|Gm13306|100039863|predicted gene 13306
mm9_v1_chr8_+_125710134_125710141	0.702275	SOX{8,9,10}.p2	NM_007876|Dpep1|13479|dipeptidase 1 (renal)	D13139|Dpep1|13479|dipeptidase 1 (renal)
mm9_v1_chr5_-_23122181_23122418	0.700655	SOX{8,9,10}.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr2_-_129525512_129525673	0.699108	SOX{8,9,10}.p2	BC137571|Pdyn|18610|prodynorphin	BC137572|Pdyn|18610|prodynorphin	AF026537|Pdyn|18610|prodynorphin	AK133597|Pdyn|18610|prodynorphin
mm9_v1_chr2_-_119444196_119444240	0.698926	SOX{8,9,10}.p2	BC115883|Oip5|70645|Opa interacting protein 5	BC116660|Oip5|70645|Opa interacting protein 5	AK017825|Oip5|70645|Opa interacting protein 5	AK045323|Oip5|70645|Opa interacting protein 5	NM_001042653|Oip5|70645|Opa interacting protein 5
mm9_v1_chr5_+_136259172_136259218	0.698399	SOX{8,9,10}.p2	DQ402950|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chr8_+_131209614_131209661	0.697451	SOX{8,9,10}.p2	AK088016|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)	AK135521|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)	AK167682|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chrX_-_97821244_97821285	0.696868	SOX{8,9,10}.p2	AK012624|Pdzd11|72621|PDZ domain containing 11	NM_028303|Pdzd11|72621|PDZ domain containing 11	BC004608|Pdzd11|72621|PDZ domain containing 11	AK007454|Pdzd11|72621|PDZ domain containing 11	BC022181|Pdzd11|72621|PDZ domain containing 11
mm9_v1_chr1_-_135817945_135817982	0.696407	SOX{8,9,10}.p2	AK037150|Prelp|116847|proline arginine-rich end leucine-rich repeat	BC019775|Prelp|116847|proline arginine-rich end leucine-rich repeat	AK047480|Prelp|116847|proline arginine-rich end leucine-rich repeat	NM_054077|Prelp|116847|proline arginine-rich end leucine-rich repeat
mm9_v1_chr6_-_92656148_92656177	0.689836	SOX{8,9,10}.p2	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr17_+_3482314_3482460	0.688141	SOX{8,9,10}.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr9_+_6168660_6168794	0.687416	SOX{8,9,10}.p2	BC030896|Pdgfd|71785|platelet-derived growth factor, D polypeptide	AF335583|Pdgfd|71785|platelet-derived growth factor, D polypeptide
mm9_v1_chrX_-_96086314_96086363	0.686415	SOX{8,9,10}.p2	AK031419|Ophn1|94190|oligophrenin 1	AK036038|Ophn1|94190|oligophrenin 1	AK043239|Ophn1|94190|oligophrenin 1	AK048153|Ophn1|94190|oligophrenin 1	AK166392|Ophn1|94190|oligophrenin 1	NM_052976|Ophn1|94190|oligophrenin 1	AK039304|Ophn1|94190|oligophrenin 1
mm9_v1_chr5_+_101227737_101227799	0.681454	SOX{8,9,10}.p2	AK145935|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK004139|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK088290|Mrps18c|68735|mitochondrial ribosomal protein S18C	BC028442|Mrps18c|68735|mitochondrial ribosomal protein S18C	NM_026826|Mrps18c|68735|mitochondrial ribosomal protein S18C
mm9_v1_chr1_+_57831651_57831771	0.680825	SOX{8,9,10}.p2	NM_144882|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK012791|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK019292|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK161988|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK031266|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	BC021879|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK032169|Spats2l|67198|spermatogenesis associated, serine-rich 2-like
mm9_v1_chr5_+_31754808_31754902	0.672885	SOX{8,9,10}.p2	NM_172993|Zfp512|269639|zinc finger protein 512	AK173267|Zfp512|269639|zinc finger protein 512	AK146353|Zfp512|269639|zinc finger protein 512	AK084205|Zfp512|269639|zinc finger protein 512	AK149921|Zfp512|269639|zinc finger protein 512	AK154918|Zfp512|269639|zinc finger protein 512	BC089160|Zfp512|269639|zinc finger protein 512	BC066136|Zfp512|269639|zinc finger protein 512
mm9_v1_chr8_-_88079169_88079179	0.671231	SOX{8,9,10}.p2	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr16_-_18289209_18289363	0.668897	SOX{8,9,10}.p2	AK086233|Dgcr8|94223|DiGeorge syndrome critical region gene 8	AB086857|Dgcr8|94223|DiGeorge syndrome critical region gene 8	NM_033324|Dgcr8|94223|DiGeorge syndrome critical region gene 8	BC062919|Dgcr8|94223|DiGeorge syndrome critical region gene 8	BC066118|Dgcr8|94223|DiGeorge syndrome critical region gene 8
mm9_v1_chr3_+_95733186_95733221	0.664863	SOX{8,9,10}.p2	AK088401|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK012759|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK049647|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK159446|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK147888|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr11_+_98769162_98769202	0.664659	SOX{8,9,10}.p2	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr11_-_30119771_30119771	0.663892	SOX{8,9,10}.p2	NM_175836|Spnb2|20742|spectrin beta 2
mm9_v1_chr4_-_150026205_150026286	0.662209	SOX{8,9,10}.p2	AK134677|Slc45a1|242773|solute carrier family 45, member 1	BC051188|Slc45a1|242773|solute carrier family 45, member 1	AK134683|Slc45a1|242773|solute carrier family 45, member 1	AK158002|Slc45a1|242773|solute carrier family 45, member 1	AK082651|Slc45a1|242773|solute carrier family 45, member 1	NM_173774|Slc45a1|242773|solute carrier family 45, member 1
mm9_v1_chr17_-_79754427_79754441	0.661312	SOX{8,9,10}.p2	AK014281|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK019447|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	NM_026514|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chrX_-_133492517_133492517	0.65964	SOX{8,9,10}.p2	NM_001080967|Tmsb15b2|100034363|thymosin beta 15b2
mm9_v1_chr9_+_46721685_46721730	0.658999	SOX{8,9,10}.p2	AK038437|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK049847|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK013669|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	BC054400|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK140089|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene
mm9_v1_chr3_-_66785062_66785239	0.657664	SOX{8,9,10}.p2	U67055|Shox2|20429|short stature homeobox 2	AK145063|Shox2|20429|short stature homeobox 2	AK032007|Shox2|20429|short stature homeobox 2
mm9_v1_chr19_+_46150521_46150534	0.652272	SOX{8,9,10}.p2	AK129040|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1
mm9_v1_chr4_+_147932563_147932565	0.65081	SOX{8,9,10}.p2	AK168700|Exosc10|50912|exosome component 10
mm9_v1_chr5_+_43906796_43906826	0.65044	SOX{8,9,10}.p2	AK017441|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	NM_001135172|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	BC090967|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7
mm9_v1_chr1_-_183950050_183950110	0.650134	SOX{8,9,10}.p2	NM_001083120|Enah|13800|enabled homolog (Drosophila)	NM_001083121|Enah|13800|enabled homolog (Drosophila)	NM_008680|Enah|13800|enabled homolog (Drosophila)	NM_010135|Enah|13800|enabled homolog (Drosophila)
mm9_v1_chr5_+_43993160_43993160	0.647686	SOX{8,9,10}.p2	BC038308|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	DQ002400|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	NM_175425|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7
mm9_v1_chr11_-_77303157_77303183	0.646619	SOX{8,9,10}.p2	BC151158|Ankrd13b|268445|ankyrin repeat domain 13b	BC172028|Ankrd13b|268445|ankyrin repeat domain 13b	NM_172945|Ankrd13b|268445|ankyrin repeat domain 13b
mm9_v1_chr4_-_116380924_116380989	0.64556	SOX{8,9,10}.p2	AK007725|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	AK012761|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	BC054756|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	AK084194|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	NM_025962|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria
mm9_v1_chr4_+_126698578_126698591	0.644439	SOX{8,9,10}.p2	BC080848|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	BC089305|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr8_+_94192087_94192089	0.644236	SOX{8,9,10}.p2	
mm9_v1_chr1_+_93698037_93698053	0.64381	SOX{8,9,10}.p2	AK011180|Twist2|13345|twist homolog 2 (Drosophila)	AK011861|Twist2|13345|twist homolog 2 (Drosophila)	BC090636|Twist2|13345|twist homolog 2 (Drosophila)	NM_007855|Twist2|13345|twist homolog 2 (Drosophila)	U36384|Twist2|13345|twist homolog 2 (Drosophila)
mm9_v1_chr8_-_72149357_72149431	0.642173	SOX{8,9,10}.p2	AK083009|Zfp868|234362|zinc finger protein 868
mm9_v1_chr3_-_19062922_19063101	0.641951	SOX{8,9,10}.p2	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr2_+_91097485_91097485	0.641828	SOX{8,9,10}.p2	AK049166|Pacsin3|80708|protein kinase C and casein kinase substrate in neurons 3	NM_028733|Pacsin3|80708|protein kinase C and casein kinase substrate in neurons 3
mm9_v1_chr16_+_45094383_45094406	0.641672	SOX{8,9,10}.p2	BC058751|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr8_+_87604638_87604668	0.641367	SOX{8,9,10}.p2	AK147129|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr2_-_80287552_80287621	0.640984	SOX{8,9,10}.p2	AK029941|Frzb|20378|frizzled-related protein	NM_011356|Frzb|20378|frizzled-related protein
mm9_v1_chr13_-_23837389_23837470	0.640602	SOX{8,9,10}.p2	NM_175653|Hist1h3c|319148|histone cluster 1, H3c	BC120800|Hist1h3c|319148|histone cluster 1, H3c	BC120802|Hist1h3c|319148|histone cluster 1, H3c
mm9_v1_chr7_-_17509228_17509415	0.640482	SOX{8,9,10}.p2	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr5_-_123237776_123238028	0.639235	SOX{8,9,10}.p2	
mm9_v1_chr9_+_62189285_62189297	0.637558	SOX{8,9,10}.p2	U73478|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chr9_+_85736444_85736534	0.635815	SOX{8,9,10}.p2	NM_001164792|Tpbg|21983|trophoblast glycoprotein	AK165553|Tpbg|21983|trophoblast glycoprotein	BC058198|Tpbg|21983|trophoblast glycoprotein	AK143519|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr9_+_21142267_21142297	0.635385	SOX{8,9,10}.p2	AK166695|Slc44a2|68682|solute carrier family 44, member 2	AK048648|Slc44a2|68682|solute carrier family 44, member 2	BC031535|Slc44a2|68682|solute carrier family 44, member 2	NM_152808|Slc44a2|68682|solute carrier family 44, member 2
mm9_v1_chr13_-_21808011_21808011	0.632904	SOX{8,9,10}.p2	NM_178199|Hist1h2bl|319185|histone cluster 1, H2bl
mm9_v1_chr4_+_122960527_122960606	0.631813	SOX{8,9,10}.p2	BC010345|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	NM_148917|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	BC003283|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4
mm9_v1_chr17_+_53618542_53618596	0.631536	SOX{8,9,10}.p2	AK081999|Rab5a|271457|RAB5A, member RAS oncogene family	NM_025887|Rab5a|271457|RAB5A, member RAS oncogene family	AK076093|Rab5a|271457|RAB5A, member RAS oncogene family	BC096481|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr2_+_128891655_128891754	0.627477	SOX{8,9,10}.p2	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr16_+_11066390_11066492	0.62745	SOX{8,9,10}.p2	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr16_+_20097626_20097705	0.626955	SOX{8,9,10}.p2	NM_029436|Klhl24|75785|kelch-like 24 (Drosophila)	AK015239|Klhl24|75785|kelch-like 24 (Drosophila)	AK044892|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr11_+_98769464_98769464	0.625521	SOX{8,9,10}.p2	AJ009559|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AJ223087|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_011799|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr4_+_100449274_100449299	0.623816	SOX{8,9,10}.p2	AK080923|Cachd1|320508|cache domain containing 1	BC058676|Cachd1|320508|cache domain containing 1	NM_198037|Cachd1|320508|cache domain containing 1
mm9_v1_chr12_+_70825931_70825985	0.622957	SOX{8,9,10}.p2	AK009141|Atp5s|68055|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s	AK003725|Atp5s|68055|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s	NM_026536|Atp5s|68055|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s	BC027442|Atp5s|68055|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s
mm9_v1_chr5_-_139936448_139936481	0.622272	SOX{8,9,10}.p2	BC044867|3110082I17Rik|73212|RIKEN cDNA 3110082I17 gene	AK014271|3110082I17Rik|73212|RIKEN cDNA 3110082I17 gene	BC058580|3110082I17Rik|73212|RIKEN cDNA 3110082I17 gene
mm9_v1_chr10_+_34017221_34017318	0.6191	SOX{8,9,10}.p2	NM_030203|Tspyl4|72480|TSPY-like 4	AK034070|Tspyl4|72480|TSPY-like 4	AK158197|Tspyl4|72480|TSPY-like 4	BC017540|Tspyl4|72480|TSPY-like 4	BC034656|Tspyl4|72480|TSPY-like 4	AK030740|Tspyl4|72480|TSPY-like 4	AK034414|Tspyl4|72480|TSPY-like 4	AK020999|Tspyl4|72480|TSPY-like 4
mm9_v1_chr13_-_78338131_78338242	0.618311	SOX{8,9,10}.p2	BC108408|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	X74134|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	NM_010151|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr12_+_110798661_110798666	0.618007	SOX{8,9,10}.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr3_+_80840609_80840648	0.614985	SOX{8,9,10}.p2	AK033734|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr7_+_18398030_18398100	0.60979	SOX{8,9,10}.p2	AK005390|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005482|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005509|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005533|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	NM_025957|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	BC099412|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14
mm9_v1_chr19_+_34996847_34996902	0.607154	SOX{8,9,10}.p2	AK135856|Kif20b|240641|kinesin family member 20B	NM_183046|Kif20b|240641|kinesin family member 20B	AK045067|Kif20b|240641|kinesin family member 20B	AK049225|Kif20b|240641|kinesin family member 20B	BC151061|Kif20b|240641|kinesin family member 20B	BC172148|Kif20b|240641|kinesin family member 20B	AK143629|Kif20b|240641|kinesin family member 20B
mm9_v1_chr3_+_137004089_137004128	0.6066	SOX{8,9,10}.p2	AB034693|Emcn|59308|endomucin	AF060883|Emcn|59308|endomucin	AK164422|Emcn|59308|endomucin
mm9_v1_chr8_+_34842513_34842603	0.605943	SOX{8,9,10}.p2	AK088342|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	NM_026584|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK146803|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	BC020016|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK021183|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr6_+_38542722_38542769	0.604198	SOX{8,9,10}.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr3_-_10208480_10208567	0.601993	SOX{8,9,10}.p2	M28726|Fabp4|11770|fatty acid binding protein 4, adipocyte	U96149|Fabp9|21884|fatty acid binding protein 9, testis	CT010390|Fabp4|11770|fatty acid binding protein 4, adipocyte	K02109|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC018558|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC054426|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr9_-_35365985_35366129	0.601817	SOX{8,9,10}.p2	AF142630|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC024852|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC061130|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK078340|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK050693|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	NM_013932|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm9_v1_chr12_+_37968225_37968446	0.601799	SOX{8,9,10}.p2	AK040702|Tmem195|319660|transmembrane protein 195	NM_178767|Tmem195|319660|transmembrane protein 195	BC038044|Tmem195|319660|transmembrane protein 195	AK050246|Tmem195|319660|transmembrane protein 195	AK163155|Tmem195|319660|transmembrane protein 195
mm9_v1_chr13_+_40982534_40982735	0.6	SOX{8,9,10}.p2	NM_008105|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK080061|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK054226|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AB037597|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435149|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr7_-_139751384_139751389	0.598056	SOX{8,9,10}.p2	AK190000|Oat|18242|ornithine aminotransferase	AK213292|Oat|18242|ornithine aminotransferase
mm9_v1_chr1_-_55283189_55283376	0.597798	SOX{8,9,10}.p2	BC026871|Rftn2|74013|raftlin family member 2	AK014318|Rftn2|74013|raftlin family member 2
mm9_v1_chr17_+_24869629_24869803	0.594474	SOX{8,9,10}.p2	AK004280|Rpl3l|66211|ribosomal protein L3-like	NM_025425|Rpl3l|66211|ribosomal protein L3-like	AK002393|Rpl3l|66211|ribosomal protein L3-like	BC145876|Rpl3l|66211|ribosomal protein L3-like	BC145878|Rpl3l|66211|ribosomal protein L3-like
mm9_v1_chr13_-_25112189_25112247	0.59336	SOX{8,9,10}.p2	NM_001013389|Mrs2|380836|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm9_v1_chr2_+_135883963_135884022	0.593148	SOX{8,9,10}.p2	AK018222|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene	AK045946|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr19_+_4214263_4214360	0.592143	SOX{8,9,10}.p2	AK137396|Clcf1|56708|cardiotrophin-like cytokine factor 1	AK166218|Clcf1|56708|cardiotrophin-like cytokine factor 1
mm9_v1_chr7_-_125676823_125676868	0.591468	SOX{8,9,10}.p2	AF098949|Coq7|12850|demethyl-Q 7	NM_009940|Coq7|12850|demethyl-Q 7
mm9_v1_chr12_-_113749363_113749407	0.59133	SOX{8,9,10}.p2	AK047810|Tmem179|104885|transmembrane protein 179	NM_178915|Tmem179|104885|transmembrane protein 179	BC046482|Tmem179|104885|transmembrane protein 179	AK090230|Tmem179|104885|transmembrane protein 179
mm9_v1_chr5_-_87919883_87919895	0.591173	SOX{8,9,10}.p2	BC048926|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	AK140757|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	NM_053184|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1
mm9_v1_chr6_+_73198498_73198722	0.590938	SOX{8,9,10}.p2	NM_019879|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK088888|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK005080|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK087390|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK002754|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AF144101|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK139288|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	BC011087|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK184184|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr4_+_150227911_150228027	0.58728	SOX{8,9,10}.p2	BC057646|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr5_+_23606402_23606481	0.585371	SOX{8,9,10}.p2	NM_001161800|Klhl7|52323|kelch-like 7 (Drosophila)	NM_026448|Klhl7|52323|kelch-like 7 (Drosophila)	AK083358|Klhl7|52323|kelch-like 7 (Drosophila)	AK089072|Klhl7|52323|kelch-like 7 (Drosophila)	AK012326|Klhl7|52323|kelch-like 7 (Drosophila)	BC029154|Klhl7|52323|kelch-like 7 (Drosophila)	AK082520|Klhl7|52323|kelch-like 7 (Drosophila)
mm9_v1_chr19_+_9026020_9026327	0.584508	SOX{8,9,10}.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr2_-_66094647_66094696	0.58326	SOX{8,9,10}.p2	BC151199|Ttc21b|73668|tetratricopeptide repeat domain 21B	BC172115|Ttc21b|73668|tetratricopeptide repeat domain 21B	DQ011164|Ttc21b|73668|tetratricopeptide repeat domain 21B	NM_001047604|Ttc21b|73668|tetratricopeptide repeat domain 21B
mm9_v1_chr3_-_89802501_89802651	0.580347	SOX{8,9,10}.p2	AF465243|Hax1|23897|HCLS1 associated X-1	BC006688|Hax1|23897|HCLS1 associated X-1	BC147481|Hax1|23897|HCLS1 associated X-1	BC098225|Hax1|23897|HCLS1 associated X-1	AK002256|Hax1|23897|HCLS1 associated X-1	AK135138|Hax1|23897|HCLS1 associated X-1	AF023482|Hax1|23897|HCLS1 associated X-1	AF023483|Hax1|23897|HCLS1 associated X-1	NM_011826|Hax1|23897|HCLS1 associated X-1	AK010633|Hax1|23897|HCLS1 associated X-1	AK088746|Hax1|23897|HCLS1 associated X-1
mm9_v1_chr9_+_107948285_107948372	0.580144	SOX{8,9,10}.p2	AK208685|Ip6k1|27399|inositol hexaphosphate kinase 1	AK211834|Ip6k1|27399|inositol hexaphosphate kinase 1	AK191619|Ip6k1|27399|inositol hexaphosphate kinase 1	AK215657|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr11_+_59652991_59653017	0.57986	SOX{8,9,10}.p2	AK008226|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chrX_+_96331434_96331470	0.578279	SOX{8,9,10}.p2	AK034996|Efnb1|13641|ephrin B1	NM_010110|Efnb1|13641|ephrin B1
mm9_v1_chr7_-_72516109_72516162	0.576031	SOX{8,9,10}.p2	D14340|Tjp1|21872|tight junction protein 1	NM_001163574|Tjp1|21872|tight junction protein 1	NM_009386|Tjp1|21872|tight junction protein 1
mm9_v1_chr11_+_93905443_93905464	0.574941	SOX{8,9,10}.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr10_+_126703317_126703496	0.574715	SOX{8,9,10}.p2	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr1_+_82836029_82836087	0.574241	SOX{8,9,10}.p2	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr4_+_115410434_115410451	0.573908	SOX{8,9,10}.p2	AK079503|4732418C07Rik|230648|RIKEN cDNA 4732418C07 gene
mm9_v1_chr11_-_31571811_31571918	0.568184	SOX{8,9,10}.p2	NM_001024919|Bod1|69556|biorientation of chromosomes in cell division 1	BC116435|Bod1|69556|biorientation of chromosomes in cell division 1	BC116436|Bod1|69556|biorientation of chromosomes in cell division 1	BC128508|Bod1|69556|biorientation of chromosomes in cell division 1	BC128509|Bod1|69556|biorientation of chromosomes in cell division 1
mm9_v1_chr2_-_35972131_35972337	0.567558	SOX{8,9,10}.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr6_-_145167481_145167570	0.567309	SOX{8,9,10}.p2	BC014700|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC031623|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr15_-_89145631_89145745	0.566646	SOX{8,9,10}.p2	BC157935|Sbf1|77980|SET binding factor 1	BC158013|Sbf1|77980|SET binding factor 1	BC172094|Sbf1|77980|SET binding factor 1	AK129485|Sbf1|77980|SET binding factor 1	AK147332|Sbf1|77980|SET binding factor 1	NM_001081030|Sbf1|77980|SET binding factor 1	NM_001170561|Sbf1|77980|SET binding factor 1
mm9_v1_chr17_-_53828596_53828657	0.562636	SOX{8,9,10}.p2	AK014357|Sgol1|72415|shugoshin-like 1 (S. pombe)	NM_028232|Sgol1|72415|shugoshin-like 1 (S. pombe)	AK154188|Sgol1|72415|shugoshin-like 1 (S. pombe)
mm9_v1_chr13_-_53568111_53568148	0.560463	SOX{8,9,10}.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr5_-_145900858_145900915	0.556804	SOX{8,9,10}.p2	BC055927|Pdap1|231887|PDGFA associated protein 1	AK169233|Pdap1|231887|PDGFA associated protein 1	BC139204|Pdap1|231887|PDGFA associated protein 1	BC139205|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr4_+_102242664_102242699	0.556542	SOX{8,9,10}.p2	NM_001177980|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC023751|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr12_-_21423296_21423379	0.556247	SOX{8,9,10}.p2	BC090838|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	NM_011739|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC110680|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr2_+_143371807_143372226	0.55591	SOX{8,9,10}.p2	AK158598|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK133620|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	NM_008792|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC057348|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK158493|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK161585|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC052013|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK039783|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	M55669|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483512|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483513|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2
mm9_v1_chr5_-_123979739_123979846	0.555766	SOX{8,9,10}.p2	AK080345|Vps33a|77573|vacuolar protein sorting 33A (yeast)
mm9_v1_chr15_-_53177711_53177759	0.553748	SOX{8,9,10}.p2	AK132327|Ext1|14042|exostoses (multiple) 1	NM_010162|Ext1|14042|exostoses (multiple) 1
mm9_v1_chr16_-_15966921_15966936	0.551882	SOX{8,9,10}.p2	BC069859|2310008H04Rik|224008|RIKEN cDNA 2310008H04 gene
mm9_v1_chr17_+_21082397_21082419	0.549311	SOX{8,9,10}.p2	BC006606|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	NM_016891|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr1_-_160286359_160286472	0.549019	SOX{8,9,10}.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr7_+_133415982_133416132	0.547095	SOX{8,9,10}.p2	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr11_-_3763899_3763908	0.546825	SOX{8,9,10}.p2	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr15_+_81626455_81626512	0.54323	SOX{8,9,10}.p2	AJ223207|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr17_+_43938905_43938991	0.54128	SOX{8,9,10}.p2	AK136805|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr10_+_59569052_59569061	0.537133	SOX{8,9,10}.p2	BC060210|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr10_+_39089594_39089612	0.536544	SOX{8,9,10}.p2	AK156584|Fyn|14360|Fyn proto-oncogene	AK171646|Fyn|14360|Fyn proto-oncogene	NM_001122892|Fyn|14360|Fyn proto-oncogene	NM_001122893|Fyn|14360|Fyn proto-oncogene	NM_008054|Fyn|14360|Fyn proto-oncogene	BC092217|Fyn|14360|Fyn proto-oncogene
mm9_v1_chr15_-_42508294_42508522	0.535543	SOX{8,9,10}.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr1_+_183081058_183081062	0.534926	SOX{8,9,10}.p2	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr17_-_68353397_68353499	0.534107	SOX{8,9,10}.p2	AK141901|Arhgap28|268970|Rho GTPase activating protein 28	BC066788|Arhgap28|268970|Rho GTPase activating protein 28	NM_172964|Arhgap28|268970|Rho GTPase activating protein 28	AK087523|Arhgap28|268970|Rho GTPase activating protein 28
mm9_v1_chr7_-_52689833_52689978	0.532607	SOX{8,9,10}.p2	AK159112|Ruvbl2|20174|RuvB-like protein 2	NM_011304|Ruvbl2|20174|RuvB-like protein 2
mm9_v1_chr4_-_116480136_116480166	0.53195	SOX{8,9,10}.p2	BC023109|Toe1|68276|target of EGR1, member 1 (nuclear)	AK082975|Toe1|68276|target of EGR1, member 1 (nuclear)	AK016889|Toe1|68276|target of EGR1, member 1 (nuclear)	AK019829|Toe1|68276|target of EGR1, member 1 (nuclear)	NM_026654|Toe1|68276|target of EGR1, member 1 (nuclear)
mm9_v1_chr17_+_21082444_21082447	0.529791	SOX{8,9,10}.p2	AK088776|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr13_-_14155541_14155555	0.529612	SOX{8,9,10}.p2	AB016044|Ggps1|14593|geranylgeranyl diphosphate synthase 1
mm9_v1_chr8_-_47292973_47292977	0.52246	SOX{8,9,10}.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr9_-_58160063_58160199	0.522437	SOX{8,9,10}.p2	BC003973|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr11_+_102110161_102110288	0.522284	SOX{8,9,10}.p2	NM_153544|BC030867|217216|cDNA sequence BC030867	AK029811|BC030867|217216|cDNA sequence BC030867	BC030867|BC030867|217216|cDNA sequence BC030867	BC108338|BC030867|217216|cDNA sequence BC030867	BC085317|BC030867|217216|cDNA sequence BC030867
mm9_v1_chr7_-_52124950_52125085	0.521494	SOX{8,9,10}.p2	BC008543|Ptov1|84113|prostate tumor over expressed gene 1
mm9_v1_chrX_+_132806184_132806337	0.5203	SOX{8,9,10}.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr4_-_133574655_133574730	0.52003	SOX{8,9,10}.p2	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chrX_+_50251737_50251764	0.518724	SOX{8,9,10}.p2	AF283559|Rps2|16898|ribosomal protein S2
mm9_v1_chr12_+_110800212_110800261	0.518711	SOX{8,9,10}.p2	AK018142|Meg3|17263|maternally expressed 3
mm9_v1_chr9_+_106183391_106183391	0.516427	SOX{8,9,10}.p2	NM_027354|Poc1a|70235|POC1 centriolar protein homolog A (Chlamydomonas)
mm9_v1_chr8_+_91220921_91220958	0.513499	SOX{8,9,10}.p2	NM_001128170|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_001128171|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_173369|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_001128169|Cyld|74256|cylindromatosis (turban tumor syndrome)	AK122389|Cyld|74256|cylindromatosis (turban tumor syndrome)	AK147204|Cyld|74256|cylindromatosis (turban tumor syndrome)
mm9_v1_chr2_-_114027142_114027208	0.511705	SOX{8,9,10}.p2	AK164226|Zfp770|228491|zinc finger protein 770	AK032578|Zfp770|228491|zinc finger protein 770	AK077547|Zfp770|228491|zinc finger protein 770	NM_175466|Zfp770|228491|zinc finger protein 770	AK044261|Zfp770|228491|zinc finger protein 770	AK043843|Zfp770|228491|zinc finger protein 770
mm9_v1_chr9_+_72655019_72655080	0.509202	SOX{8,9,10}.p2	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr7_-_125676764_125676807	0.50742	SOX{8,9,10}.p2	AF080580|Coq7|12850|demethyl-Q 7	BC038681|Coq7|12850|demethyl-Q 7
mm9_v1_chrX_-_13423666_13423727	0.505401	SOX{8,9,10}.p2	NM_009806|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17137|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17138|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm9_v1_chr2_-_179777080_179777173	0.500975	SOX{8,9,10}.p2	BC014752|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	BC008222|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	AF019662|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	NM_011969|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	AK088615|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	AK165563|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	AK146765|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7	AK168234|Psma7|26444|proteasome (prosome, macropain) subunit, alpha type 7
mm9_v1_chr7_-_125676808_125676822	0.497254	SOX{8,9,10}.p2	AK158380|Coq7|12850|demethyl-Q 7
mm9_v1_chr6_+_4465627_4465644	0.496379	SOX{8,9,10}.p2	AK160814|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chrX_-_92361694_92361718	0.493952	SOX{8,9,10}.p2	BC067031|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr8_-_41720091_41720170	0.493884	SOX{8,9,10}.p2	AK028160|Mtmr7|54384|myotubularin related protein 7	AK081973|Mtmr7|54384|myotubularin related protein 7	BC032254|Mtmr7|54384|myotubularin related protein 7	AK148768|Mtmr7|54384|myotubularin related protein 7	NM_001040699|Mtmr7|54384|myotubularin related protein 7
mm9_v1_chr4_-_117556005_117556175	0.492427	SOX{8,9,10}.p2	AK165829|B4galt2|53418|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	NM_017377|B4galt2|53418|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	AK145250|B4galt2|53418|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
mm9_v1_chr12_+_53604952_53605039	0.490281	SOX{8,9,10}.p2	AK131622|Arhgap5|11855|Rho GTPase activating protein 5	AK041016|Arhgap5|11855|Rho GTPase activating protein 5
mm9_v1_chr5_-_135028113_135028149	0.489482	SOX{8,9,10}.p2	AK045967|Clip2|269713|CAP-GLY domain containing linker protein 2
mm9_v1_chr8_-_24348082_24348154	0.488787	SOX{8,9,10}.p2	BC002156|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	AK076104|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	NM_024240|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)
mm9_v1_chr6_-_51416921_51416984	0.487769	SOX{8,9,10}.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr6_-_52168571_52168571	0.48732	SOX{8,9,10}.p2	NM_010455|Hoxa7|15404|homeobox A7
mm9_v1_chr1_+_183081112_183081141	0.484842	SOX{8,9,10}.p2	AK165179|Cnih4|98417|cornichon homolog 4 (Drosophila)	BC065395|Cnih4|98417|cornichon homolog 4 (Drosophila)	AK166153|Cnih4|98417|cornichon homolog 4 (Drosophila)	BC040509|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr13_-_76081142_76081219	0.484577	SOX{8,9,10}.p2	AK139158|Rhobtb3|73296|Rho-related BTB domain containing 3	AK020938|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr2_+_110561733_110561771	0.482871	SOX{8,9,10}.p2	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr8_+_87604829_87604904	0.480803	SOX{8,9,10}.p2	AK010893|BC056474|414077|cDNA sequence BC056474	BC089623|BC056474|414077|cDNA sequence BC056474	NM_001001493|BC056474|414077|cDNA sequence BC056474	BC024937|BC056474|414077|cDNA sequence BC056474	BC091742|BC056474|414077|cDNA sequence BC056474	BC056474|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr14_-_60845511_60845640	0.480075	SOX{8,9,10}.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr4_-_128639595_128639690	0.480017	SOX{8,9,10}.p2	BC138973|Adc|242669|arginine decarboxylase	BC138974|Adc|242669|arginine decarboxylase	NM_172875|Adc|242669|arginine decarboxylase	BC065772|Adc|242669|arginine decarboxylase	BC028775|Adc|242669|arginine decarboxylase	AK047522|Adc|242669|arginine decarboxylase	AK077201|Adc|242669|arginine decarboxylase	AK080568|Adc|242669|arginine decarboxylase	AK154564|Adc|242669|arginine decarboxylase	AK148717|Adc|242669|arginine decarboxylase
mm9_v1_chr17_-_25922419_25922537	0.479178	SOX{8,9,10}.p2	BC083322|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC005586|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK047517|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK034798|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC030466|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK032999|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK080454|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK154248|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK012748|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK021220|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr3_-_122322556_122322614	0.47854	SOX{8,9,10}.p2	AK151930|Fnbp1l|214459|formin binding protein 1-like	AK152002|Fnbp1l|214459|formin binding protein 1-like	NM_001114665|Fnbp1l|214459|formin binding protein 1-like	NM_153118|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr6_-_113991945_113992108	0.477066	SOX{8,9,10}.p2	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr1_+_169528492_169528646	0.476585	SOX{8,9,10}.p2	NM_009107|Rxrg|20183|retinoid X receptor gamma	BC058401|Rxrg|20183|retinoid X receptor gamma	S62948|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr5_+_34339351_34339354	0.476474	SOX{8,9,10}.p2	AK147594|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr2_-_39046224_39046253	0.474153	SOX{8,9,10}.p2	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chrX_+_12648604_12648673	0.473494	SOX{8,9,10}.p2	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr6_-_115625875_115625915	0.472394	SOX{8,9,10}.p2	AB057663|Raf1|110157|v-raf-leukemia viral oncogene 1	AB077145|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr1_+_95405907_95405920	0.472168	SOX{8,9,10}.p2	
mm9_v1_chr5_-_145900957_145900965	0.471104	SOX{8,9,10}.p2	AK147170|Pdap1|231887|PDGFA associated protein 1	NM_001033313|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr3_+_37538897_37539001	0.470866	SOX{8,9,10}.p2	AF176903|Spry1|24063|sprouty homolog 1 (Drosophila)	BC051977|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr9_+_99370839_99370876	0.469536	SOX{8,9,10}.p2	BC068205|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene	AK005560|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene
mm9_v1_chrX_-_131285919_131285957	0.469147	SOX{8,9,10}.p2	BC027264|Armcx6|278097|armadillo repeat containing, X-linked 6	AK148507|Armcx6|278097|armadillo repeat containing, X-linked 6	AK160766|Armcx6|278097|armadillo repeat containing, X-linked 6	NM_001007578|Armcx6|278097|armadillo repeat containing, X-linked 6
mm9_v1_chr5_-_149864518_149864637	0.46898	SOX{8,9,10}.p2	L38477|Hmgb1|15289|high mobility group box 1	Z11997|Hmgb1|15289|high mobility group box 1	BC083067|Hmgb1|15289|high mobility group box 1	AK051800|Hmgb1|15289|high mobility group box 1	BC111468|Hmgb1|15289|high mobility group box 1	BC085090|Hmgb1|15289|high mobility group box 1	BC006586|Hmgb1|15289|high mobility group box 1	AK146420|Hmgb1|15289|high mobility group box 1	AK166007|Hmgb1|15289|high mobility group box 1	BC091741|Hmgb1|15289|high mobility group box 1	BC008565|Hmgb1|15289|high mobility group box 1	AK087949|Hmgb1|15289|high mobility group box 1	AK144428|Hmgb1|15289|high mobility group box 1	BC100312|Hmgb1|15289|high mobility group box 1	AK082902|Hmgb1|15289|high mobility group box 1	BC094030|Hmgb1|15289|high mobility group box 1	U00431|Hmgb1|15289|high mobility group box 1	AK084841|Hmgb1|15289|high mobility group box 1	AK157846|Hmgb1|15289|high mobility group box 1	NM_010439|Hmgb1|15289|high mobility group box 1	AK050659|Hmgb1|15289|high mobility group box 1	AK150924|Hmgb1|15289|high mobility group box 1
mm9_v1_chr14_+_58693951_58693999	0.467738	SOX{8,9,10}.p2	AK158584|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr3_+_88342459_88342597	0.467668	SOX{8,9,10}.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr2_+_125860507_125860527	0.466701	SOX{8,9,10}.p2	AK086639|Fgf7|14178|fibroblast growth factor 7	BC052847|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr17_+_8533225_8533295	0.466111	SOX{8,9,10}.p2	BC060190|Prr18|320111|proline rich region 18	AK045379|Prr18|320111|proline rich region 18
mm9_v1_chr1_+_137914635_137914732	0.465248	SOX{8,9,10}.p2	NM_001160146|Tmem9|66241|transmembrane protein 9
mm9_v1_chr9_-_64869349_64869525	0.464997	SOX{8,9,10}.p2	Z97207|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	AK051735|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	AK159494|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	BC057023|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	BC031755|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	AK050556|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	AK052865|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1	NM_021345|Ptplad1|57874|protein tyrosine phosphatase-like A domain containing 1
mm9_v1_chr3_-_146432922_146432972	0.462788	SOX{8,9,10}.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr17_+_21082425_21082439	0.46035	SOX{8,9,10}.p2	BC052678|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr4_+_147932513_147932557	0.458841	SOX{8,9,10}.p2	NM_016699|Exosc10|50912|exosome component 10	AK081014|Exosc10|50912|exosome component 10	AK166070|Exosc10|50912|exosome component 10	AK144162|Exosc10|50912|exosome component 10	BC027326|Exosc10|50912|exosome component 10
mm9_v1_chr14_-_119324535_119324628	0.457843	SOX{8,9,10}.p2	AK141247|Dzip1|66573|DAZ interacting protein 1	BC098211|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr7_+_36182053_36182081	0.455232	SOX{8,9,10}.p2	BC003981|Ccdc123|72140|coiled-coil domain containing 123	AK029107|Ccdc123|72140|coiled-coil domain containing 123
mm9_v1_chr7_+_29572956_29573056	0.453617	SOX{8,9,10}.p2	AK187075|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr4_-_116480186_116480196	0.451865	SOX{8,9,10}.p2	AK046576|Toe1|68276|target of EGR1, member 1 (nuclear)
mm9_v1_chr11_+_98769122_98769151	0.451233	SOX{8,9,10}.p2	AK166003|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chrX_-_103124651_103124717	0.450499	SOX{8,9,10}.p2	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr1_-_64167574_64167617	0.448944	SOX{8,9,10}.p2	AB221646|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr2_+_155436947_155436947	0.448653	SOX{8,9,10}.p2	NM_001085378|Myh7b|668940|myosin, heavy chain 7B, cardiac muscle, beta
mm9_v1_chr17_+_21082449_21082458	0.44832	SOX{8,9,10}.p2	AK078135|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	AK054239|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr7_+_30088984_30089023	0.448286	SOX{8,9,10}.p2	BC052348|Dpf1|29861|D4, zinc and double PHD fingers family 1	NM_013874|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48238|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr5_-_135096236_135096321	0.447261	SOX{8,9,10}.p2	AK202900|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197136|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192982|Eif4h|22384|eukaryotic translation initiation factor 4H	AK200162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191422|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191093|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192082|Eif4h|22384|eukaryotic translation initiation factor 4H	AK194320|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195976|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197414|Eif4h|22384|eukaryotic translation initiation factor 4H	AK202850|Eif4h|22384|eukaryotic translation initiation factor 4H	AK204156|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr2_-_80287781_80287882	0.446976	SOX{8,9,10}.p2	U91905|Frzb|20378|frizzled-related protein
mm9_v1_chr8_-_88079141_88079168	0.446833	SOX{8,9,10}.p2	AB028853|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	AK163255|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr8_-_42140113_42140147	0.445555	SOX{8,9,10}.p2	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr3_-_105746740_105746751	0.442709	SOX{8,9,10}.p2	AK215505|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr8_+_94881694_94881780	0.440667	SOX{8,9,10}.p2	BC056994|Irx5|54352|Iroquois related homeobox 5 (Drosophila)	NM_018826|Irx5|54352|Iroquois related homeobox 5 (Drosophila)
mm9_v1_chr17_+_6106857_6106857	0.439273	SOX{8,9,10}.p2	AK043826|Tulp4|68842|tubby like protein 4	AK084820|Tulp4|68842|tubby like protein 4
mm9_v1_chr4_-_11181373_11181380	0.437376	SOX{8,9,10}.p2	AK169552|Ints8|72656|integrator complex subunit 8	AK049513|Ints8|72656|integrator complex subunit 8
mm9_v1_chr5_+_36236113_36236140	0.437353	SOX{8,9,10}.p2	AK043209|Afap1|70292|actin filament associated protein 1	AK148000|Afap1|70292|actin filament associated protein 1	AK011153|Afap1|70292|actin filament associated protein 1
mm9_v1_chr8_+_72806863_72806966	0.437351	SOX{8,9,10}.p2	NM_001146153|Homer3|26558|homer homolog 3 (Drosophila)	NM_011984|Homer3|26558|homer homolog 3 (Drosophila)	AK155463|Homer3|26558|homer homolog 3 (Drosophila)	BC095961|Homer3|26558|homer homolog 3 (Drosophila)	BC005773|Homer3|26558|homer homolog 3 (Drosophila)
mm9_v1_chr15_-_102455518_102455529	0.436764	SOX{8,9,10}.p2	AK039648|Atf7|223922|activating transcription factor 7	AK154588|Atf7|223922|activating transcription factor 7	AK155046|Atf7|223922|activating transcription factor 7
mm9_v1_chr11_-_115884885_115885030	0.436228	SOX{8,9,10}.p2	
mm9_v1_chr12_+_70397723_70397748	0.435794	SOX{8,9,10}.p2	AK051418|Klhdc2|69554|kelch domain containing 2	BC005581|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr1_-_186556329_186556486	0.432049	SOX{8,9,10}.p2	AK036435|Hlx|15284|H2.0-like homeobox	BC064068|Hlx|15284|H2.0-like homeobox	NM_008250|Hlx|15284|H2.0-like homeobox	X58250|Hlx|15284|H2.0-like homeobox
mm9_v1_chr4_-_41644071_41644122	0.431848	SOX{8,9,10}.p2	AF068615|Cntfr|12804|ciliary neurotrophic factor receptor	AK015675|Cntfr|12804|ciliary neurotrophic factor receptor	NM_001146080|Cntfr|12804|ciliary neurotrophic factor receptor	NM_016673|Cntfr|12804|ciliary neurotrophic factor receptor
mm9_v1_chr10_+_59569206_59569342	0.431507	SOX{8,9,10}.p2	AK122233|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr12_-_59369833_59369867	0.431476	SOX{8,9,10}.p2	AK080201|Clec14a|66864|C-type lectin domain family 14, member a	AK018432|Clec14a|66864|C-type lectin domain family 14, member a	AK164665|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr10_-_79568856_79568857	0.431101	SOX{8,9,10}.p2	AJ512611|Sbno2|216161|strawberry notch homolog 2 (Drosophila)
mm9_v1_chr19_+_4711220_4711230	0.430107	SOX{8,9,10}.p2	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr10_+_105907394_105907408	0.429532	SOX{8,9,10}.p2	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr8_+_34842304_34842440	0.428467	SOX{8,9,10}.p2	AK158783|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	NM_001167921|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK150415|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK153370|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr2_-_30758807_30758816	0.427936	SOX{8,9,10}.p2	AK150013|Ptges|64292|prostaglandin E synthase	AK080897|Ptges|64292|prostaglandin E synthase	NM_022415|Ptges|64292|prostaglandin E synthase
mm9_v1_chr7_-_52689639_52689678	0.426933	SOX{8,9,10}.p2	AK135404|Ruvbl2|20174|RuvB-like protein 2	AK144156|Ruvbl2|20174|RuvB-like protein 2	BC116693|Ruvbl2|20174|RuvB-like protein 2	BC115809|Ruvbl2|20174|RuvB-like protein 2	AB013912|Ruvbl2|20174|RuvB-like protein 2
mm9_v1_chr11_-_23533535_23533548	0.425932	SOX{8,9,10}.p2	AK029538|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene
mm9_v1_chr16_+_18877129_18877328	0.42568	SOX{8,9,10}.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr11_+_78312784_78312851	0.424669	SOX{8,9,10}.p2	X63003|Vtn|22370|vitronectin	BC012690|Vtn|22370|vitronectin	AF440693|Vtn|22370|vitronectin	M77123|Vtn|22370|vitronectin
mm9_v1_chr13_-_117814079_117814204	0.420517	SOX{8,9,10}.p2	AK150732|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK151510|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK152919|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153169|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153270|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150113|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	BC021881|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149889|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149918|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150208|Parp8|52552|poly (ADP-ribose) polymerase family, member 8
mm9_v1_chr5_-_5694325_5694567	0.419396	SOX{8,9,10}.p2	BC043459|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150881|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150889|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166162|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK052981|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_028734|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr17_-_87846158_87846274	0.418953	SOX{8,9,10}.p2	BC021347|Calm2|12314|calmodulin 2	BC051444|Calm2|12314|calmodulin 2	BC100301|Calm2|12314|calmodulin 2	AK013068|Calm2|12314|calmodulin 2	AK012247|Calm2|12314|calmodulin 2	AK168741|Calm2|12314|calmodulin 2	AK005089|Calm2|12314|calmodulin 2	AK012564|Calm2|12314|calmodulin 2	AK161268|Calm2|12314|calmodulin 2	AK161984|Calm2|12314|calmodulin 2	AK152303|Calm2|12314|calmodulin 2	L31642|Calm2|12314|calmodulin 2	AK160636|Calm2|12314|calmodulin 2	NM_007589|Calm2|12314|calmodulin 2
mm9_v1_chr13_-_61006182_61006207	0.418898	SOX{8,9,10}.p2	AY034576|Tpbpb|116913|trophoblast specific protein beta	BC099441|Tpbpb|116913|trophoblast specific protein beta	BC100333|Tpbpb|116913|trophoblast specific protein beta	AK018794|Tpbpb|116913|trophoblast specific protein beta	AK005433|Tpbpb|116913|trophoblast specific protein beta	AK018793|Tpbpb|116913|trophoblast specific protein beta	AK018795|Tpbpb|116913|trophoblast specific protein beta	AK018798|Tpbpb|116913|trophoblast specific protein beta	AK018799|Tpbpb|116913|trophoblast specific protein beta	AK018805|Tpbpb|116913|trophoblast specific protein beta	AK018809|Tpbpb|116913|trophoblast specific protein beta	AK018810|Tpbpb|116913|trophoblast specific protein beta	AK018817|Tpbpb|116913|trophoblast specific protein beta	AK018820|Tpbpb|116913|trophoblast specific protein beta	AK018824|Tpbpb|116913|trophoblast specific protein beta	AK018827|Tpbpb|116913|trophoblast specific protein beta	AK018804|Tpbpb|116913|trophoblast specific protein beta	AK018808|Tpbpb|116913|trophoblast specific protein beta	NM_026429|Tpbpb|116913|trophoblast specific protein beta
mm9_v1_chr5_+_118695228_118695301	0.413535	SOX{8,9,10}.p2	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr11_-_43239482_43239482	0.413465	SOX{8,9,10}.p2	AF069051|Pttg1|30939|pituitary tumor-transforming gene 1	AF071209|Pttg1|30939|pituitary tumor-transforming gene 1	NM_013917|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr5_-_123064483_123064536	0.41311	SOX{8,9,10}.p2	BC055721|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AK161375|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AK013424|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AF354757|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	NM_009879|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	Y10495|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)
mm9_v1_chr14_-_27489331_27489368	0.412473	SOX{8,9,10}.p2	BC064450|Pde12|211948|phosphodiesterase 12	NM_178668|Pde12|211948|phosphodiesterase 12	AK161083|Pde12|211948|phosphodiesterase 12
mm9_v1_chr16_+_62814501_62814570	0.410809	SOX{8,9,10}.p2	BC023414|Stx19|68159|syntaxin 19	NM_026588|Stx19|68159|syntaxin 19	AK020701|Stx19|68159|syntaxin 19	AK076337|Stx19|68159|syntaxin 19
mm9_v1_chr16_+_95923988_95924060	0.408931	SOX{8,9,10}.p2	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr15_-_10643806_10643852	0.407817	SOX{8,9,10}.p2	AK160119|Rai14|75646|retinoic acid induced 14
mm9_v1_chr15_+_91991704_91991862	0.406922	SOX{8,9,10}.p2	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr5_+_116295259_116295312	0.406773	SOX{8,9,10}.p2	AK145037|Cit|12704|citron
mm9_v1_chr14_+_60997156_60997209	0.406194	SOX{8,9,10}.p2	BC056350|Fam123a|72125|family with sequence similarity 123, member A	AK139177|Fam123a|72125|family with sequence similarity 123, member A	AK032651|Fam123a|72125|family with sequence similarity 123, member A	AK011185|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr2_-_157835086_157835095	0.40458	SOX{8,9,10}.p2	AF332067|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	AF332068|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	BC053067|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	NM_029282|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)
mm9_v1_chr12_+_88607621_88607770	0.402674	SOX{8,9,10}.p2	AK165289|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK076069|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK077903|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	BC025552|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	NM_146036|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK166644|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	BC023857|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
mm9_v1_chr8_-_73363618_73363618	0.402317	SOX{8,9,10}.p2	AK014582|Arrdc2|70807|arrestin domain containing 2	NM_027560|Arrdc2|70807|arrestin domain containing 2
mm9_v1_chr2_-_84518208_84518278	0.400693	SOX{8,9,10}.p2	AK170587|Tmx2|66958|thioredoxin-related transmembrane protein 2	AK145245|Tmx2|66958|thioredoxin-related transmembrane protein 2
mm9_v1_chr7_+_31076852_31076943	0.400513	SOX{8,9,10}.p2	BC138413|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr7_+_51640108_51640216	0.399692	SOX{8,9,10}.p2	D45858|Syt3|20981|synaptotagmin III	BC051969|Syt3|20981|synaptotagmin III
mm9_v1_chr18_+_80243633_80243827	0.399433	SOX{8,9,10}.p2	NM_053117|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)	BC037678|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)	AK035811|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr5_-_135027949_135028024	0.399411	SOX{8,9,10}.p2	BC121191|Clip2|269713|CAP-GLY domain containing linker protein 2
mm9_v1_chr7_+_107423813_107423829	0.399208	SOX{8,9,10}.p2	AK164085|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr1_+_34636537_34636571	0.396415	SOX{8,9,10}.p2	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr5_+_34339258_34339295	0.395276	SOX{8,9,10}.p2	AK147703|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr9_-_58160966_58161035	0.395242	SOX{8,9,10}.p2	BC098243|Loxl1|16949|lysyl oxidase-like 1	BC037999|Loxl1|16949|lysyl oxidase-like 1	AK078512|Loxl1|16949|lysyl oxidase-like 1	NM_010729|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr19_-_20465115_20465131	0.395229	SOX{8,9,10}.p2	BC002289|Anxa1|16952|annexin A1
mm9_v1_chr1_-_137406954_137407027	0.393147	SOX{8,9,10}.p2	AK082667|Nav1|215690|neuron navigator 1	AK053255|Nav1|215690|neuron navigator 1
mm9_v1_chr11_-_99105293_99105435	0.392998	SOX{8,9,10}.p2	BC079890|Krt222|268481|keratin 222	AK031954|Krt222|268481|keratin 222	NM_172946|Krt222|268481|keratin 222	AK044068|Krt222|268481|keratin 222	AK138778|Krt222|268481|keratin 222
mm9_v1_chr9_-_64101138_64101232	0.39278	SOX{8,9,10}.p2	L02526|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC054754|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC051137|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr9_-_100407241_100407274	0.391022	SOX{8,9,10}.p2	AK053155|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1	AK054051|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1
mm9_v1_chr5_+_124357243_124357339	0.390689	SOX{8,9,10}.p2	AK135127|Denr|68184|density-regulated protein	AK017647|Denr|68184|density-regulated protein	AK010394|Denr|68184|density-regulated protein	AK018762|Denr|68184|density-regulated protein	AK083852|Denr|68184|density-regulated protein	NM_026603|Denr|68184|density-regulated protein	BC025143|Denr|68184|density-regulated protein	BC043922|Denr|68184|density-regulated protein
mm9_v1_chr6_-_135664978_135664993	0.390248	SOX{8,9,10}.p2	
mm9_v1_chr2_-_164860272_164860295	0.387279	SOX{8,9,10}.p2	BC017152|Ncoa5|228869|nuclear receptor coactivator 5	NM_144892|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr7_-_134351860_134352145	0.38633	SOX{8,9,10}.p2	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr8_-_73121418_73121547	0.384825	SOX{8,9,10}.p2	
mm9_v1_chr1_-_51972771_51972812	0.383117	SOX{8,9,10}.p2	BC054786|Myo1b|17912|myosin IB	AK161062|Myo1b|17912|myosin IB	AK141207|Myo1b|17912|myosin IB
mm9_v1_chrX_+_96331496_96331657	0.38234	SOX{8,9,10}.p2	BC021656|Efnb1|13641|ephrin B1	BC006797|Efnb1|13641|ephrin B1	Z48781|Efnb1|13641|ephrin B1	BC018572|Efnb1|13641|ephrin B1
mm9_v1_chr8_-_23763885_23763908	0.380903	SOX{8,9,10}.p2	AF513911|Polb|18970|polymerase (DNA directed), beta	BC060998|Polb|18970|polymerase (DNA directed), beta	AK077127|Polb|18970|polymerase (DNA directed), beta	AK151436|Polb|18970|polymerase (DNA directed), beta	AK146745|Polb|18970|polymerase (DNA directed), beta	BC006681|Polb|18970|polymerase (DNA directed), beta	NM_011130|Polb|18970|polymerase (DNA directed), beta
mm9_v1_chr14_+_84933363_84933455	0.380446	SOX{8,9,10}.p2	AK045478|Pcdh17|219228|protocadherin 17	AK079626|Pcdh17|219228|protocadherin 17	AK046505|Pcdh17|219228|protocadherin 17	AK047338|Pcdh17|219228|protocadherin 17
mm9_v1_chrX_-_163647088_163647149	0.37961	SOX{8,9,10}.p2	AK010659|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK088783|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK162286|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK169718|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK169108|Tmsb4x|19241|thymosin, beta 4, X chromosome	NM_021278|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr14_-_73948048_73948048	0.379119	SOX{8,9,10}.p2	AK040749|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	NM_172527|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15
mm9_v1_chrX_+_69062091_69062188	0.377875	SOX{8,9,10}.p2	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr1_+_136078939_136079071	0.376493	SOX{8,9,10}.p2	NM_007695|Chi3l1|12654|chitinase 3-like 1	AK051475|Chi3l1|12654|chitinase 3-like 1	AK155412|Chi3l1|12654|chitinase 3-like 1	BC003780|Chi3l1|12654|chitinase 3-like 1	BC004734|Chi3l1|12654|chitinase 3-like 1	BC005611|Chi3l1|12654|chitinase 3-like 1
mm9_v1_chr1_-_172145521_172145534	0.376443	SOX{8,9,10}.p2	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr19_+_44277761_44277879	0.376103	SOX{8,9,10}.p2	AK078675|Scd3|30049|stearoyl-coenzyme A desaturase 3	AK078713|Scd3|30049|stearoyl-coenzyme A desaturase 3	AK136277|Scd3|30049|stearoyl-coenzyme A desaturase 3	NM_024450|Scd3|30049|stearoyl-coenzyme A desaturase 3	AF272037|Scd3|30049|stearoyl-coenzyme A desaturase 3	BC118033|Scd3|30049|stearoyl-coenzyme A desaturase 3	BC118045|Scd3|30049|stearoyl-coenzyme A desaturase 3
mm9_v1_chr4_-_150418580_150418616	0.375392	SOX{8,9,10}.p2	AB013605|Per3|18628|period homolog 3 (Drosophila)	AJ007377|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr7_+_50685457_50685489	0.375257	SOX{8,9,10}.p2	BC092386|Lim2|233187|lens intrinsic membrane protein 2	AK029354|Lim2|233187|lens intrinsic membrane protein 2	NM_177693|Lim2|233187|lens intrinsic membrane protein 2	AK164958|Lim2|233187|lens intrinsic membrane protein 2	BC119253|Lim2|233187|lens intrinsic membrane protein 2	BC119255|Lim2|233187|lens intrinsic membrane protein 2
mm9_v1_chr1_+_137914574_137914625	0.374438	SOX{8,9,10}.p2	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chrX_-_50622974_50623027	0.373064	SOX{8,9,10}.p2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr2_+_118872854_118872888	0.372172	SOX{8,9,10}.p2	AK009772|Casc5|76464|cancer susceptibility candidate 5	NM_029617|Casc5|76464|cancer susceptibility candidate 5	BC080815|Casc5|76464|cancer susceptibility candidate 5	AK033132|Casc5|76464|cancer susceptibility candidate 5
mm9_v1_chr11_+_75578548_75578573	0.371486	SOX{8,9,10}.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr5_+_7304126_7304163	0.371187	SOX{8,9,10}.p2	BC049718|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK133311|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK014870|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK076678|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	NM_027603|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene
mm9_v1_chr8_+_97605076_97605133	0.371185	SOX{8,9,10}.p2	NM_028805|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK054173|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1
mm9_v1_chr11_+_31901708_31901737	0.370728	SOX{8,9,10}.p2	AK011563|Nsg2|18197|neuron specific gene family member 2
mm9_v1_chrX_+_74756332_74756489	0.370554	SOX{8,9,10}.p2	AK030547|Tbl1x|21372|transducin (beta)-like 1 X-linked	BC043105|Tbl1x|21372|transducin (beta)-like 1 X-linked
mm9_v1_chr1_+_9591347_9591354	0.368285	SOX{8,9,10}.p2	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr4_-_108506131_108506262	0.368082	SOX{8,9,10}.p2	BC024920|Btf3l4|70533|basic transcription factor 3-like 4	BC058282|Btf3l4|70533|basic transcription factor 3-like 4	AK011367|Btf3l4|70533|basic transcription factor 3-like 4	AK167256|Btf3l4|70533|basic transcription factor 3-like 4	BC138215|Btf3l4|70533|basic transcription factor 3-like 4	BC138216|Btf3l4|70533|basic transcription factor 3-like 4	BC024612|Btf3l4|70533|basic transcription factor 3-like 4	AK013120|Btf3l4|70533|basic transcription factor 3-like 4	AK076283|Btf3l4|70533|basic transcription factor 3-like 4	NM_027453|Btf3l4|70533|basic transcription factor 3-like 4	AK004239|Btf3l4|70533|basic transcription factor 3-like 4
mm9_v1_chr7_-_150734696_150734742	0.367796	SOX{8,9,10}.p2	AK090112|Nap1l4|17955|nucleosome assembly protein 1-like 4
mm9_v1_chr17_-_25922267_25922279	0.367059	SOX{8,9,10}.p2	AK005274|Haghl|68977|hydroxyacylglutathione hydrolase-like	NM_026897|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK079632|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr5_-_139936486_139936511	0.366877	SOX{8,9,10}.p2	NM_028469|3110082I17Rik|73212|RIKEN cDNA 3110082I17 gene
mm9_v1_chr1_+_40082201_40082235	0.365432	SOX{8,9,10}.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr3_+_95733228_95733353	0.364613	SOX{8,9,10}.p2	U89345|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK168380|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC080684|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC005690|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK202920|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK076049|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr4_-_117852224_117852281	0.36441	SOX{8,9,10}.p2	AK129187|Kdm4a|230674|lysine (K)-specific demethylase 4A
mm9_v1_chr6_-_66987377_66987402	0.361686	SOX{8,9,10}.p2	BC011141|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	AK144900|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	L28177|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	NM_007836|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha
mm9_v1_chr3_+_80840575_80840591	0.359868	SOX{8,9,10}.p2	AK042767|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr4_+_94405963_94405990	0.359803	SOX{8,9,10}.p2	BC050824|Tek|21687|endothelial-specific receptor tyrosine kinase	D13738|Tek|21687|endothelial-specific receptor tyrosine kinase	NM_013690|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr18_-_15222079_15222098	0.359103	SOX{8,9,10}.p2	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr15_+_4325490_4325644	0.35889	SOX{8,9,10}.p2	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chr19_-_44481898_44481917	0.357708	SOX{8,9,10}.p2	CT010171|Scd1|20249|stearoyl-Coenzyme A desaturase 1	CT010332|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr17_-_20761835_20761840	0.356861	SOX{8,9,10}.p2	BC134352|Fpr-rs3|14290|formyl peptide receptor, related sequence 3	NM_008040|Fpr-rs3|14290|formyl peptide receptor, related sequence 3
mm9_v1_chr2_+_69708777_69708824	0.356013	SOX{8,9,10}.p2	AK200405|Ssb|20823|Sjogren syndrome antigen B
mm9_v1_chr5_-_92511942_92511942	0.354507	SOX{8,9,10}.p2	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr1_+_7079042_7079277	0.353024	SOX{8,9,10}.p2	AK079468|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166166|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168705|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC110360|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK134223|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168606|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC019193|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK187882|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK040848|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK145008|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166593|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr5_-_103640272_103640352	0.35288	SOX{8,9,10}.p2	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr6_-_13788453_13788525	0.352708	SOX{8,9,10}.p2	AK043090|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_57834201_57834235	0.352664	SOX{8,9,10}.p2	NM_201242|Lims1|110829|LIM and senescent cell antigen-like domains 1	EU122953|Lims1|110829|LIM and senescent cell antigen-like domains 1
mm9_v1_chr7_+_25315666_25315756	0.349307	SOX{8,9,10}.p2	NM_153134|Irgq|210146|immunity-related GTPase family, Q	BC056347|Irgq|210146|immunity-related GTPase family, Q	BC080294|Irgq|210146|immunity-related GTPase family, Q	AK051117|Irgq|210146|immunity-related GTPase family, Q
mm9_v1_chr2_+_13501725_13501846	0.348844	SOX{8,9,10}.p2	AK205443|Vim|22352|vimentin
mm9_v1_chr4_-_11181265_11181301	0.347981	SOX{8,9,10}.p2	AK012736|Ints8|72656|integrator complex subunit 8
mm9_v1_chr12_-_3309404_3309739	0.344497	SOX{8,9,10}.p2	AK195457|Rab10|19325|RAB10, member RAS oncogene family	AB232604|Rab10|19325|RAB10, member RAS oncogene family	CT010394|Rab10|19325|RAB10, member RAS oncogene family	AK150384|Rab10|19325|RAB10, member RAS oncogene family	AK151473|Rab10|19325|RAB10, member RAS oncogene family	AF035646|Rab10|19325|RAB10, member RAS oncogene family
mm9_v1_chr6_-_25639812_25639825	0.343914	SOX{8,9,10}.p2	AK032525|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr1_-_152840432_152840584	0.343219	SOX{8,9,10}.p2	BC147549|Hmcn1|545370|hemicentin 1	BC147568|Hmcn1|545370|hemicentin 1	AK052713|Hmcn1|545370|hemicentin 1	NM_001024720|Hmcn1|545370|hemicentin 1
mm9_v1_chr4_-_43013217_43013384	0.343183	SOX{8,9,10}.p2	AK149931|Vcp|269523|valosin containing protein	AK151109|Vcp|269523|valosin containing protein	AK151418|Vcp|269523|valosin containing protein	AK146109|Vcp|269523|valosin containing protein	AK169140|Vcp|269523|valosin containing protein	BC043053|Vcp|269523|valosin containing protein	AK028264|Vcp|269523|valosin containing protein	AK159475|Vcp|269523|valosin containing protein	AK159177|Vcp|269523|valosin containing protein	AK153012|Vcp|269523|valosin containing protein	AK167794|Vcp|269523|valosin containing protein	BC049114|Vcp|269523|valosin containing protein	AK153249|Vcp|269523|valosin containing protein	AK159509|Vcp|269523|valosin containing protein	NM_009503|Vcp|269523|valosin containing protein
mm9_v1_chr8_+_97605137_97605189	0.34212	SOX{8,9,10}.p2	AK010364|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK037858|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK034103|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK136322|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK031630|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK049345|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	AK087973|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1	BC045200|Katnb1|74187|katanin p80 (WD40-containing) subunit B 1
mm9_v1_chr2_+_153571990_153572007	0.341405	SOX{8,9,10}.p2	BC052405|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1
mm9_v1_chr19_+_4510471_4510550	0.341188	SOX{8,9,10}.p2	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chr7_-_56103405_56103420	0.338717	SOX{8,9,10}.p2	NM_001198841|Csrp3|13009|cysteine and glycine-rich protein 3
mm9_v1_chr2_-_84518194_84518206	0.338465	SOX{8,9,10}.p2	BC013544|Tmx2|66958|thioredoxin-related transmembrane protein 2	BC110994|Tmx2|66958|thioredoxin-related transmembrane protein 2	AK009759|Tmx2|66958|thioredoxin-related transmembrane protein 2	NM_025868|Tmx2|66958|thioredoxin-related transmembrane protein 2
mm9_v1_chr4_+_120712170_120712207	0.336787	SOX{8,9,10}.p2	NM_007741|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr2_-_25080180_25080221	0.336107	SOX{8,9,10}.p2	NM_146116|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr17_+_29839370_29839515	0.335832	SOX{8,9,10}.p2	
mm9_v1_chr15_-_98780503_98780728	0.333742	SOX{8,9,10}.p2	AK199768|Tuba1a|22142|tubulin, alpha 1A	AK216974|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chrX_-_71070284_71070317	0.33308	SOX{8,9,10}.p2	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr6_-_25639835_25639849	0.332917	SOX{8,9,10}.p2	BC031918|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr6_-_93628981_93629110	0.330484	SOX{8,9,10}.p2	AF027505|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK081387|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr12_+_70397702_70397722	0.329572	SOX{8,9,10}.p2	AK082528|Klhdc2|69554|kelch domain containing 2	AY513272|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr7_-_56103389_56103404	0.329533	SOX{8,9,10}.p2	Z49883|Csrp3|13009|cysteine and glycine-rich protein 3	AK011624|Csrp3|13009|cysteine and glycine-rich protein 3	AK003120|Csrp3|13009|cysteine and glycine-rich protein 3
mm9_v1_chr6_-_25639904_25639979	0.329336	SOX{8,9,10}.p2	NM_010338|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr2_-_7002287_7002310	0.32698	SOX{8,9,10}.p2	AK137292|Celf2|14007|CUGBP, Elav-like family member 2	AK164914|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr12_+_70397667_70397700	0.32666	SOX{8,9,10}.p2	AK078408|Klhdc2|69554|kelch domain containing 2	NM_027117|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr11_-_100007218_100007243	0.326012	SOX{8,9,10}.p2	BC034561|Krt19|16669|keratin 19	M28698|Krt19|16669|keratin 19	AB472075|Krt19|16669|keratin 19	BC085304|Krt19|16669|keratin 19	NM_008471|Krt19|16669|keratin 19
mm9_v1_chr2_+_3253438_3253439	0.32597	SOX{8,9,10}.p2	AK020348|Acbd7|78245|acyl-Coenzyme A binding domain containing 7	NM_030063|Acbd7|78245|acyl-Coenzyme A binding domain containing 7
mm9_v1_chr13_+_108948931_108948987	0.325207	SOX{8,9,10}.p2	AK010576|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK013216|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK014517|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082676|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157175|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157504|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	NM_028042|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082109|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC066170|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK045333|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK156267|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC056463|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC037200|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AJ427222|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm9_v1_chr6_-_124492297_124492394	0.324498	SOX{8,9,10}.p2	BC022123|C1s|50908|complement component 1, s subcomponent	BC018319|C1s|50908|complement component 1, s subcomponent	NM_144938|C1s|50908|complement component 1, s subcomponent	AK087522|C1s|50908|complement component 1, s subcomponent	AF459019|C1s|50908|complement component 1, s subcomponent	AK172453|C1s|50908|complement component 1, s subcomponent	NM_001097617|C1s|50908|complement component 1, s subcomponent
mm9_v1_chr2_+_13504271_13504305	0.324391	SOX{8,9,10}.p2	
mm9_v1_chr17_-_34752884_34752915	0.323596	SOX{8,9,10}.p2	BC139484|Egfl8|81701|EGF-like domain 8	BC141312|Egfl8|81701|EGF-like domain 8	BC145632|Egfl8|81701|EGF-like domain 8	AK148723|Egfl8|81701|EGF-like domain 8	AY635583|Egfl8|81701|EGF-like domain 8	NM_152922|Egfl8|81701|EGF-like domain 8
mm9_v1_chrX_-_101176600_101176631	0.323407	SOX{8,9,10}.p2	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr11_+_116780161_116780176	0.319499	SOX{8,9,10}.p2	BC063084|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	BC094604|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	NM_172948|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm9_v1_chr5_-_92512486_92512611	0.319385	SOX{8,9,10}.p2	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr2_+_49921978_49921983	0.31841	SOX{8,9,10}.p2	NM_177139|Lypd6|320343|LY6/PLAUR domain containing 6	AK053620|Lypd6|320343|LY6/PLAUR domain containing 6
mm9_v1_chr18_+_35758269_35758376	0.316746	SOX{8,9,10}.p2	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr16_+_45093816_45093826	0.316464	SOX{8,9,10}.p2	BC096487|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr5_-_138613028_138613124	0.315699	SOX{8,9,10}.p2	BC066024|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC023232|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC065164|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150059|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150066|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK154052|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK133091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK149913|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	D26091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	NM_008568|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK144980|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)
mm9_v1_chr8_-_109948891_109948958	0.31493	SOX{8,9,10}.p2	BC054835|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK054034|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK075755|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117992|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117993|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	NM_026277|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC034900|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK021194|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC103793|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK165521|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_35582969_35582996	0.313965	SOX{8,9,10}.p2	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr15_-_82184631_82184726	0.313808	SOX{8,9,10}.p2	AK002749|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK010988|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK012328|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	BC048451|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	NM_025987|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm9_v1_chr4_+_128404814_128404885	0.31304	SOX{8,9,10}.p2	NM_001195083|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC051657|Phc2|54383|polyhomeotic-like 2 (Drosophila)	AB062362|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC071246|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr6_-_13788580_13788612	0.313036	SOX{8,9,10}.p2	AK047740|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr15_+_78813475_78813522	0.312939	SOX{8,9,10}.p2	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr5_+_73882264_73882364	0.312668	SOX{8,9,10}.p2	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr17_-_56615784_56615852	0.31205	SOX{8,9,10}.p2	D28530|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	D28531|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	AK032604|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	BC052462|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr11_-_95867076_95867257	0.311515	SOX{8,9,10}.p2	AF061569|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK044850|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK013940|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	BC051679|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	NM_009951|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1
mm9_v1_chr2_-_139892477_139892545	0.309246	SOX{8,9,10}.p2	AK036512|Tasp1|75812|taspase, threonine aspartase 1	NM_175225|Tasp1|75812|taspase, threonine aspartase 1	AK160983|Tasp1|75812|taspase, threonine aspartase 1	NM_001159640|Tasp1|75812|taspase, threonine aspartase 1	NM_001159641|Tasp1|75812|taspase, threonine aspartase 1	AK146320|Tasp1|75812|taspase, threonine aspartase 1	AK132709|Tasp1|75812|taspase, threonine aspartase 1	BC024597|Tasp1|75812|taspase, threonine aspartase 1	AK015624|Tasp1|75812|taspase, threonine aspartase 1
mm9_v1_chr7_+_146271910_146271981	0.308063	SOX{8,9,10}.p2	BC046333|Dpysl4|26757|dihydropyrimidinase-like 4	AK090197|Dpysl4|26757|dihydropyrimidinase-like 4	BC090674|Dpysl4|26757|dihydropyrimidinase-like 4	AB006715|Dpysl4|26757|dihydropyrimidinase-like 4	BC138573|Dpysl4|26757|dihydropyrimidinase-like 4	BC138574|Dpysl4|26757|dihydropyrimidinase-like 4
mm9_v1_chr2_+_29745582_29745619	0.307497	SOX{8,9,10}.p2	NM_001177662|Odf2|18286|outer dense fiber of sperm tails 2	NM_013615|Odf2|18286|outer dense fiber of sperm tails 2	AF034105|Odf2|18286|outer dense fiber of sperm tails 2
mm9_v1_chr8_-_107995252_107995266	0.306376	SOX{8,9,10}.p2	BC010788|Tppp3|67971|tubulin polymerization-promoting protein family member 3
mm9_v1_chr5_-_17341713_17341713	0.305775	SOX{8,9,10}.p2	NM_001159555|Cd36|12491|CD36 antigen	NM_007643|Cd36|12491|CD36 antigen
mm9_v1_chr9_+_108686107_108686181	0.305159	SOX{8,9,10}.p2	AK005166|Ip6k2|76500|inositol hexaphosphate kinase 2	AK050593|Ip6k2|76500|inositol hexaphosphate kinase 2	AK057615|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr4_+_120712225_120712235	0.304889	SOX{8,9,10}.p2	BC029697|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr5_-_72978788_72978788	0.304377	SOX{8,9,10}.p2	AK084047|Gm5868|545758|predicted gene 5868	NM_001024147|Gm5868|545758|predicted gene 5868
mm9_v1_chr14_+_121310342_121310481	0.304286	SOX{8,9,10}.p2	AK161668|Ipo5|70572|importin 5	NM_023579|Ipo5|70572|importin 5	AK079134|Ipo5|70572|importin 5	AK049422|Ipo5|70572|importin 5	AK169664|Ipo5|70572|importin 5	AK053681|Ipo5|70572|importin 5	AK017701|Ipo5|70572|importin 5	AK167303|Ipo5|70572|importin 5	AF294327|Ipo5|70572|importin 5	BC052392|Ipo5|70572|importin 5
mm9_v1_chrX_+_133527693_133527841	0.304194	SOX{8,9,10}.p2	NM_001035509|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_001035510|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_025893|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK005317|Zcchc18|66995|zinc finger, CCHC domain containing 18	BC017627|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK134856|Zcchc18|66995|zinc finger, CCHC domain containing 18
mm9_v1_chr5_-_72049479_72049546	0.301798	SOX{8,9,10}.p2	AK141571|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK159299|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK013727|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	NM_010251|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr17_+_72131286_72131286	0.300324	SOX{8,9,10}.p2	BC035226|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_030179|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr7_+_59134514_59134648	0.300279	SOX{8,9,10}.p2	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr12_-_21422781_21423065	0.299851	SOX{8,9,10}.p2	AK182050|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK185231|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK201174|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC003837|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	U57312|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK184566|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	U56243|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK187011|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	D87662|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC106164|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC132252|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC132530|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr3_+_95733163_95733182	0.299446	SOX{8,9,10}.p2	AK172146|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	NM_023210|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr16_-_36071600_36071716	0.297987	SOX{8,9,10}.p2	AK009946|Fam162a|70186|family with sequence similarity 162, member A	NM_027342|Fam162a|70186|family with sequence similarity 162, member A	BC010826|Fam162a|70186|family with sequence similarity 162, member A	AK033568|Fam162a|70186|family with sequence similarity 162, member A
mm9_v1_chr6_+_142335733_142335814	0.296322	SOX{8,9,10}.p2	AK009991|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	AK018531|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	NM_025872|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	BC085246|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)
mm9_v1_chr3_+_37538808_37538883	0.295684	SOX{8,9,10}.p2	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr7_+_17460662_17460665	0.295042	SOX{8,9,10}.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr6_-_120443824_120443824	0.293457	SOX{8,9,10}.p2	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr8_+_59934719_59934875	0.293399	SOX{8,9,10}.p2	AJ223206|Scrg1|20284|scrapie responsive gene 1	NM_009136|Scrg1|20284|scrapie responsive gene 1	BC058532|Scrg1|20284|scrapie responsive gene 1	AK046213|Scrg1|20284|scrapie responsive gene 1
mm9_v1_chr7_-_91520991_91521040	0.293302	SOX{8,9,10}.p2	AK032628|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr7_-_108080671_108080707	0.293074	SOX{8,9,10}.p2	NM_001081116|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr1_+_121903556_121903630	0.292994	SOX{8,9,10}.p2	AK032652|Sctr|319229|secretin receptor	NM_001012322|Sctr|319229|secretin receptor	BC089355|Sctr|319229|secretin receptor
mm9_v1_chr4_+_133036317_133036339	0.29237	SOX{8,9,10}.p2	AK162145|Fam46b|100342|family with sequence similarity 46, member B
mm9_v1_chr4_+_85699818_85699939	0.291862	SOX{8,9,10}.p2	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr18_+_37833939_37833988	0.290956	SOX{8,9,10}.p2	BC060691|Pcdhga3|93711|protocadherin gamma subfamily A, 3	NM_033586|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr12_+_29436660_29436756	0.289734	SOX{8,9,10}.p2	AK150308|Tssc1|380752|tumor suppressing subtransferable candidate 1	AK151830|Tssc1|380752|tumor suppressing subtransferable candidate 1	NM_201357|Tssc1|380752|tumor suppressing subtransferable candidate 1	BC031458|Tssc1|380752|tumor suppressing subtransferable candidate 1
mm9_v1_chr16_-_15966723_15966739	0.288686	SOX{8,9,10}.p2	BC085258|2310008H04Rik|224008|RIKEN cDNA 2310008H04 gene
mm9_v1_chr1_-_79758246_79758257	0.288177	SOX{8,9,10}.p2	BC025226|Wdfy1|69368|WD repeat and FYVE domain containing 1
mm9_v1_chr11_-_102308910_102308956	0.288039	SOX{8,9,10}.p2	BC025575|Fam171a2|217219|family with sequence similarity 171, member A2	BC064455|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr11_+_60526123_60526177	0.286732	SOX{8,9,10}.p2	BC029987|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)
mm9_v1_chr15_+_85036434_85036600	0.285569	SOX{8,9,10}.p2	AK083573|Fbln1|14114|fibulin 1	AK086451|Fbln1|14114|fibulin 1	NM_010180|Fbln1|14114|fibulin 1	X70854|Fbln1|14114|fibulin 1	AK035388|Fbln1|14114|fibulin 1	AK159646|Fbln1|14114|fibulin 1	AK085989|Fbln1|14114|fibulin 1	AK137511|Fbln1|14114|fibulin 1	EU543224|Fbln1|14114|fibulin 1	BC007140|Fbln1|14114|fibulin 1	AK183901|Fbln1|14114|fibulin 1	AK188770|Fbln1|14114|fibulin 1
mm9_v1_chr11_+_4886860_4887033	0.285352	SOX{8,9,10}.p2	AK155892|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	NM_007454|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK165747|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK170376|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK159273|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK160042|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	Y07919|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	BC008513|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK180383|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit
mm9_v1_chr4_-_148800731_148800857	0.284882	SOX{8,9,10}.p2	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr2_-_172195998_172196037	0.284115	SOX{8,9,10}.p2	U69106|Aurka|20878|aurora kinase A	BC014711|Aurka|20878|aurora kinase A	NM_011497|Aurka|20878|aurora kinase A	BC005425|Aurka|20878|aurora kinase A	U80932|Aurka|20878|aurora kinase A	AK085861|Aurka|20878|aurora kinase A	AK169363|Aurka|20878|aurora kinase A	AK077513|Aurka|20878|aurora kinase A	AK145968|Aurka|20878|aurora kinase A
mm9_v1_chrX_-_133403050_133403118	0.282984	SOX{8,9,10}.p2	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr3_+_144233390_144233449	0.281708	SOX{8,9,10}.p2	NM_053102|Sep15|93684|selenoprotein	AF288740|Sep15|93684|selenoprotein
mm9_v1_chr12_+_110132481_110132526	0.279496	SOX{8,9,10}.p2	NM_177602|Wdr25|212198|WD repeat domain 25	AK147993|Wdr25|212198|WD repeat domain 25
mm9_v1_chr3_+_144233654_144233696	0.279044	SOX{8,9,10}.p2	AK159085|Sep15|93684|selenoprotein	BC019792|Sep15|93684|selenoprotein	AK020419|Sep15|93684|selenoprotein	AK159353|Sep15|93684|selenoprotein
mm9_v1_chrX_+_103398594_103398687	0.278252	SOX{8,9,10}.p2	
mm9_v1_chr1_+_74901489_74901677	0.277288	SOX{8,9,10}.p2	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr9_-_45714487_45714524	0.275159	SOX{8,9,10}.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr7_-_117129643_117129675	0.272548	SOX{8,9,10}.p2	AK167021|Tmem41b|233724|transmembrane protein 41B	AK166845|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr17_-_18020889_18020919	0.270504	SOX{8,9,10}.p2	NM_013521|Fpr1|14293|formyl peptide receptor 1	AK137714|Fpr1|14293|formyl peptide receptor 1
mm9_v1_chr4_-_43013187_43013207	0.269044	SOX{8,9,10}.p2	Z14044|Vcp|269523|valosin containing protein	AK160889|Vcp|269523|valosin containing protein	AK030751|Vcp|269523|valosin containing protein
mm9_v1_chr10_+_36694535_36694557	0.268259	SOX{8,9,10}.p2	AB221663|Hdac2|15182|histone deacetylase 2
mm9_v1_chr7_-_117129702_117129846	0.268257	SOX{8,9,10}.p2	AK038953|Tmem41b|233724|transmembrane protein 41B	AK165226|Tmem41b|233724|transmembrane protein 41B	AK075726|Tmem41b|233724|transmembrane protein 41B	AK029327|Tmem41b|233724|transmembrane protein 41B	AK053588|Tmem41b|233724|transmembrane protein 41B	AK078357|Tmem41b|233724|transmembrane protein 41B	AK090100|Tmem41b|233724|transmembrane protein 41B	AK139961|Tmem41b|233724|transmembrane protein 41B	AK166427|Tmem41b|233724|transmembrane protein 41B	AK166455|Tmem41b|233724|transmembrane protein 41B	NM_153525|Tmem41b|233724|transmembrane protein 41B	BC027103|Tmem41b|233724|transmembrane protein 41B	AK172876|Tmem41b|233724|transmembrane protein 41B	BC026515|Tmem41b|233724|transmembrane protein 41B	AK033997|Tmem41b|233724|transmembrane protein 41B	AK035266|Tmem41b|233724|transmembrane protein 41B	AK162557|Tmem41b|233724|transmembrane protein 41B	AK150353|Tmem41b|233724|transmembrane protein 41B	AK153048|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr12_-_17183330_17183422	0.266111	SOX{8,9,10}.p2	BC053089|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1	AK137367|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chrX_+_12858142_12858215	0.260988	SOX{8,9,10}.p2	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr4_+_135315629_135315629	0.259242	SOX{8,9,10}.p2	NM_001085509|Myom3|242702|myomesin family, member 3
mm9_v1_chr16_-_17891608_17891820	0.258766	SOX{8,9,10}.p2	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr4_-_136986432_136986438	0.258672	SOX{8,9,10}.p2	AK008858|Cela3b|67868|chymotrypsin-like elastase family, member 3B	AK009129|Cela3b|67868|chymotrypsin-like elastase family, member 3B	AK010149|Cela3b|67868|chymotrypsin-like elastase family, member 3B	BC061066|Cela3b|67868|chymotrypsin-like elastase family, member 3B	NM_026419|Cela3b|67868|chymotrypsin-like elastase family, member 3B
mm9_v1_chr7_+_147949708_147949754	0.257801	SOX{8,9,10}.p2	BC013451|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	NM_021282|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838976|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838977|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	X62595|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	BC042693|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1
mm9_v1_chr17_-_80689434_80689517	0.257112	SOX{8,9,10}.p2	BC079618|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC066091|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC065169|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	AK042947|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr1_+_87804881_87804999	0.256398	SOX{8,9,10}.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr12_+_3365295_3365555	0.256233	SOX{8,9,10}.p2	AK147572|Kif3c|16570|kinesin family member 3C	BC062648|Kif3c|16570|kinesin family member 3C	AF013116|Kif3c|16570|kinesin family member 3C
mm9_v1_chr19_+_29064938_29065019	0.25593	SOX{8,9,10}.p2	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chr9_+_20447739_20447785	0.253839	SOX{8,9,10}.p2	AK051149|Ubl5|66177|ubiquitin-like 5	NM_025401|Ubl5|66177|ubiquitin-like 5	AK040449|Ubl5|66177|ubiquitin-like 5
mm9_v1_chr19_+_4711207_4711210	0.253287	SOX{8,9,10}.p2	AK147671|Spnb3|20743|spectrin beta 3
mm9_v1_chr2_-_119034488_119034539	0.252112	SOX{8,9,10}.p2	AK077385|Dnajc17|69408|DnaJ (Hsp40) homolog, subfamily C, member 17	BC013487|Dnajc17|69408|DnaJ (Hsp40) homolog, subfamily C, member 17	NM_139139|Dnajc17|69408|DnaJ (Hsp40) homolog, subfamily C, member 17
mm9_v1_chr17_-_57074707_57074921	0.250728	SOX{8,9,10}.p2	AF312858|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	BC053005|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	NM_022328|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK156820|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK144605|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm9_v1_chr11_+_46385014_46385159	0.248348	SOX{8,9,10}.p2	NM_001025435|BC053393|407814|cDNA sequence BC053393	BC052651|BC053393|407814|cDNA sequence BC053393	AK166706|BC053393|407814|cDNA sequence BC053393	AK166838|BC053393|407814|cDNA sequence BC053393	AK145729|BC053393|407814|cDNA sequence BC053393	AK140690|BC053393|407814|cDNA sequence BC053393
mm9_v1_chr15_+_83622380_83622428	0.246709	SOX{8,9,10}.p2	BC057550|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chrM_+_12383_12506	0.246152	SOX{8,9,10}.p2	
mm9_v1_chr3_+_93136665_93136689	0.246039	SOX{8,9,10}.p2	AK004070|Hrnr|68723|hornerin
mm9_v1_chr5_+_72091188_72091254	0.245722	SOX{8,9,10}.p2	BC157920|Gabrb1|14400|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	BC130258|Gabrb1|14400|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	NM_008069|Gabrb1|14400|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm9_v1_chr7_-_35070627_35070627	0.245681	SOX{8,9,10}.p2	AK076994|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene	NM_172741|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr1_+_40082070_40082114	0.244568	SOX{8,9,10}.p2	AK159799|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr2_-_7002344_7002370	0.244282	SOX{8,9,10}.p2	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr7_-_17200285_17200343	0.243222	SOX{8,9,10}.p2	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr17_-_35312945_35312945	0.242011	SOX{8,9,10}.p2	AK006184|Aif1|11629|allograft inflammatory factor 1	AK006562|Aif1|11629|allograft inflammatory factor 1	NM_019467|Aif1|11629|allograft inflammatory factor 1
mm9_v1_chr1_-_141273617_141273676	0.241549	SOX{8,9,10}.p2	AF406641|Crb1|170788|crumbs homolog 1 (Drosophila)	AY450552|Crb1|170788|crumbs homolog 1 (Drosophila)	NM_133239|Crb1|170788|crumbs homolog 1 (Drosophila)	AF492496|Crb1|170788|crumbs homolog 1 (Drosophila)
mm9_v1_chr15_+_83610434_83610456	0.240332	SOX{8,9,10}.p2	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr5_-_100465086_100465197	0.238081	SOX{8,9,10}.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr4_+_147932566_147932571	0.237882	SOX{8,9,10}.p2	AF091392|Exosc10|50912|exosome component 10	AK162887|Exosc10|50912|exosome component 10	AK017621|Exosc10|50912|exosome component 10	BC027840|Exosc10|50912|exosome component 10
mm9_v1_chr1_+_183081066_183081111	0.237095	SOX{8,9,10}.p2	AK144157|Cnih4|98417|cornichon homolog 4 (Drosophila)	AK021301|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr14_+_27457610_27457865	0.236798	SOX{8,9,10}.p2	AK013892|Arf4|11843|ADP-ribosylation factor 4	AK002302|Arf4|11843|ADP-ribosylation factor 4	AK168793|Arf4|11843|ADP-ribosylation factor 4	NM_007479|Arf4|11843|ADP-ribosylation factor 4	AK081686|Arf4|11843|ADP-ribosylation factor 4	AK153011|Arf4|11843|ADP-ribosylation factor 4	BC115650|Arf4|11843|ADP-ribosylation factor 4	BC115651|Arf4|11843|ADP-ribosylation factor 4	D87901|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr15_-_77949709_77949709	0.23634	SOX{8,9,10}.p2	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr9_+_123060076_123060088	0.236302	SOX{8,9,10}.p2	U08595|Clec3b|21922|C-type lectin domain family 3, member b	X79199|Clec3b|21922|C-type lectin domain family 3, member b
mm9_v1_chr17_+_88524851_88524851	0.235393	SOX{8,9,10}.p2	AK139504|Gm4832|225058|predicted gene 4832	NM_001190356|Gm4832|225058|predicted gene 4832
mm9_v1_chr2_-_181598918_181598962	0.234521	SOX{8,9,10}.p2	AK013066|2810410D24Rik|69254|RIKEN cDNA 2810410D24 gene
mm9_v1_chr7_+_148247172_148247172	0.234114	SOX{8,9,10}.p2	AB114827|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4	NM_177897|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm9_v1_chr10_-_83996632_83996824	0.232901	SOX{8,9,10}.p2	NM_175451|Ckap4|216197|cytoskeleton-associated protein 4	BC138318|Ckap4|216197|cytoskeleton-associated protein 4	BC138320|Ckap4|216197|cytoskeleton-associated protein 4	AK132136|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr2_+_181599126_181599193	0.232395	SOX{8,9,10}.p2	AK010875|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK021353|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK031110|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK005152|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK088206|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK008637|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K
mm9_v1_chr5_-_135096100_135096123	0.231152	SOX{8,9,10}.p2	BC023227|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr11_+_75275123_75275158	0.2308	SOX{8,9,10}.p2	AK018628|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene	AK008813|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene
mm9_v1_chr11_-_96691198_96691257	0.229894	SOX{8,9,10}.p2	AK131183|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	BC099895|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr11_-_51420336_51420404	0.228602	SOX{8,9,10}.p2	BC043069|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	D90151|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	L36663|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK076132|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013384|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013709|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK165609|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_001048061|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_010448|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr2_+_30663433_30663516	0.22858	SOX{8,9,10}.p2	AK009056|Mettl11a|66617|methyltransferase like 11A	AK011888|Mettl11a|66617|methyltransferase like 11A	AK154783|Mettl11a|66617|methyltransferase like 11A	AK011960|Mettl11a|66617|methyltransferase like 11A	BC027220|Mettl11a|66617|methyltransferase like 11A	NM_170592|Mettl11a|66617|methyltransferase like 11A
mm9_v1_chr17_-_79754229_79754336	0.228408	SOX{8,9,10}.p2	AK076782|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chr5_+_147196560_147196581	0.228115	SOX{8,9,10}.p2	AK044481|Wasf3|245880|WAS protein family, member 3	BC027038|Wasf3|245880|WAS protein family, member 3	NM_145155|Wasf3|245880|WAS protein family, member 3
mm9_v1_chr3_-_132754703_132754778	0.228015	SOX{8,9,10}.p2	BC047136|Gstcd|67553|glutathione S-transferase, C-terminal domain containing	NM_026231|Gstcd|67553|glutathione S-transferase, C-terminal domain containing	AK044441|Gstcd|67553|glutathione S-transferase, C-terminal domain containing	AK033409|Gstcd|67553|glutathione S-transferase, C-terminal domain containing	AK037169|Gstcd|67553|glutathione S-transferase, C-terminal domain containing
mm9_v1_chr8_-_64238879_64238894	0.22598	SOX{8,9,10}.p2	AK031696|Palld|72333|palladin, cytoskeletal associated protein	AK162050|Palld|72333|palladin, cytoskeletal associated protein	AK087270|Palld|72333|palladin, cytoskeletal associated protein
mm9_v1_chr5_+_73398142_73398230	0.225378	SOX{8,9,10}.p2	AK087479|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	AK149202|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	NM_173403|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC132529|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC138048|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4
mm9_v1_chr19_-_20465158_20465166	0.224765	SOX{8,9,10}.p2	AK167612|Anxa1|16952|annexin A1	AK171422|Anxa1|16952|annexin A1	NM_010730|Anxa1|16952|annexin A1	AK002681|Anxa1|16952|annexin A1	AK037064|Anxa1|16952|annexin A1	AK140838|Anxa1|16952|annexin A1	AK150564|Anxa1|16952|annexin A1	AK150718|Anxa1|16952|annexin A1	AK153156|Anxa1|16952|annexin A1	AK153490|Anxa1|16952|annexin A1	AK154568|Anxa1|16952|annexin A1	AK170612|Anxa1|16952|annexin A1	AK049455|Anxa1|16952|annexin A1
mm9_v1_chr16_+_18877336_18877523	0.223352	SOX{8,9,10}.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr4_+_8462996_8463009	0.223266	SOX{8,9,10}.p2	AB232585|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr10_-_80828534_80828564	0.223037	SOX{8,9,10}.p2	AK015088|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene	BC049656|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene	BC139256|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene	BC145589|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene	BC145960|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene	NM_001014836|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene
mm9_v1_chr7_-_52381569_52381578	0.222863	SOX{8,9,10}.p2	BC034450|Rpl13a|22121|ribosomal protein L13A	BC042392|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr4_+_42929523_42929598	0.222695	SOX{8,9,10}.p2	AK122428|N28178|230085|expressed sequence N28178
mm9_v1_chr2_+_84518544_84518790	0.221708	SOX{8,9,10}.p2	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr10_-_29920326_29920345	0.221518	SOX{8,9,10}.p2	AK005988|Cenpw|66311|centromere protein W	AK011700|Cenpw|66311|centromere protein W	AK141272|Cenpw|66311|centromere protein W	BC147188|Cenpw|66311|centromere protein W	BC147189|Cenpw|66311|centromere protein W	BC147710|Cenpw|66311|centromere protein W	BC147721|Cenpw|66311|centromere protein W	NM_001109747|Cenpw|66311|centromere protein W
mm9_v1_chr4_+_155068450_155068511	0.220776	SOX{8,9,10}.p2	AK046537|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr11_-_120012520_120012596	0.219939	SOX{8,9,10}.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr10_-_90634053_90634157	0.21893	SOX{8,9,10}.p2	BC141062|Tmpo|21917|thymopoietin
mm9_v1_chr6_+_40421405_40421491	0.217383	SOX{8,9,10}.p2	AK013425|Ssbp1|381760|single-stranded DNA binding protein 1	NM_028358|Ssbp1|381760|single-stranded DNA binding protein 1	NM_212468|Ssbp1|381760|single-stranded DNA binding protein 1	BC028648|Ssbp1|381760|single-stranded DNA binding protein 1	BC061183|Ssbp1|381760|single-stranded DNA binding protein 1	AK090242|Ssbp1|381760|single-stranded DNA binding protein 1	AK090272|Ssbp1|381760|single-stranded DNA binding protein 1	BC060290|Ssbp1|381760|single-stranded DNA binding protein 1	AK160556|Ssbp1|381760|single-stranded DNA binding protein 1
mm9_v1_chr7_+_29573191_29573292	0.217275	SOX{8,9,10}.p2	AK200274|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr16_+_37539964_37540021	0.217191	SOX{8,9,10}.p2	AK016099|Rabl3|67657|RAB, member of RAS oncogene family-like 3	NM_001042499|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK011280|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK028195|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK156982|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK028269|Rabl3|67657|RAB, member of RAS oncogene family-like 3	BC050194|Rabl3|67657|RAB, member of RAS oncogene family-like 3
mm9_v1_chr7_+_148653250_148653309	0.216878	SOX{8,9,10}.p2	NM_001111049|Cd151|12476|CD151 antigen	NM_009842|Cd151|12476|CD151 antigen	D89290|Cd151|12476|CD151 antigen
mm9_v1_chr5_-_100468240_100468240	0.216113	SOX{8,9,10}.p2	NM_016690|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr2_-_164658954_164659095	0.215957	SOX{8,9,10}.p2	AK004524|Neurl2|415115|neuralized-like 2 (Drosophila)	NM_001082974|Neurl2|415115|neuralized-like 2 (Drosophila)
mm9_v1_chr3_-_144761960_144762069	0.215671	SOX{8,9,10}.p2	AY161007|Clca5|229933|chloride channel calcium activated 5	AK048276|Clca5|229933|chloride channel calcium activated 5	AK028704|Clca5|229933|chloride channel calcium activated 5	NM_178697|Clca5|229933|chloride channel calcium activated 5	BC096379|Clca5|229933|chloride channel calcium activated 5	AK035512|Clca5|229933|chloride channel calcium activated 5
mm9_v1_chr11_-_96691261_96691289	0.215375	SOX{8,9,10}.p2	AK152040|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK153529|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_008686|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr2_+_124978315_124978357	0.2142	SOX{8,9,10}.p2	AK052750|Slc12a1|20495|solute carrier family 12, member 1	AK085455|Slc12a1|20495|solute carrier family 12, member 1	AK128928|Slc12a1|20495|solute carrier family 12, member 1	NM_001079690|Slc12a1|20495|solute carrier family 12, member 1	NM_183354|Slc12a1|20495|solute carrier family 12, member 1	U20973|Slc12a1|20495|solute carrier family 12, member 1	U20974|Slc12a1|20495|solute carrier family 12, member 1	U20975|Slc12a1|20495|solute carrier family 12, member 1	BC016888|Slc12a1|20495|solute carrier family 12, member 1
mm9_v1_chr2_+_162757228_162757280	0.212933	SOX{8,9,10}.p2	NM_026499|Srsf6|67996|serine/arginine-rich splicing factor 6	AK004831|Srsf6|67996|serine/arginine-rich splicing factor 6	AK133872|Srsf6|67996|serine/arginine-rich splicing factor 6	AK171709|Srsf6|67996|serine/arginine-rich splicing factor 6	AK146293|Srsf6|67996|serine/arginine-rich splicing factor 6	AK159519|Srsf6|67996|serine/arginine-rich splicing factor 6	BC012039|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr7_+_119167048_119167104	0.212624	SOX{8,9,10}.p2	AK082114|Usp47|74996|ubiquitin specific peptidase 47	BC108425|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr4_-_118162354_118162375	0.211725	SOX{8,9,10}.p2	X71425|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	X73960|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC057004|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC060182|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK052192|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK161898|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC046452|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr5_+_138526345_138526361	0.211019	SOX{8,9,10}.p2	BC052441|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK135999|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr19_-_11067736_11067739	0.208841	SOX{8,9,10}.p2	BC147202|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172006|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172010|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	AK143446|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	NM_001034898|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15
mm9_v1_chr11_+_78137699_78137848	0.207244	SOX{8,9,10}.p2	AK005077|Aldoc|11676|aldolase C, fructose-bisphosphate	NM_009657|Aldoc|11676|aldolase C, fructose-bisphosphate
mm9_v1_chr3_-_89141938_89141960	0.206622	SOX{8,9,10}.p2	AK012195|Efna4|13639|ephrin A4	AK142604|Efna4|13639|ephrin A4	NM_007910|Efna4|13639|ephrin A4	AK144085|Efna4|13639|ephrin A4
mm9_v1_chr13_-_76081343_76081394	0.204504	SOX{8,9,10}.p2	AK081381|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr17_+_34742803_34742908	0.203151	SOX{8,9,10}.p2	NM_001163379|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AB005623|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AK086281|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm9_v1_chr18_-_37798218_37798376	0.201641	SOX{8,9,10}.p2	BC114348|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	BC125010|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AF332006|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AY583456|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AK077159|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	NM_001159275|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2
mm9_v1_chr2_-_125684720_125684819	0.201578	SOX{8,9,10}.p2	AF071312|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	BC023096|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AF087688|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK145225|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK146153|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132207|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK084421|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK010383|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK037757|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132776|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	NM_009939|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm9_v1_chr10_+_17443024_17443226	0.201347	SOX{8,9,10}.p2	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr6_-_85283412_85283433	0.201241	SOX{8,9,10}.p2	AK036285|Sfxn5|94282|sideroflexin 5	AK043706|Sfxn5|94282|sideroflexin 5	AK082073|Sfxn5|94282|sideroflexin 5	AK038793|Sfxn5|94282|sideroflexin 5	NM_178639|Sfxn5|94282|sideroflexin 5
mm9_v1_chr6_-_13789847_13789902	0.201121	SOX{8,9,10}.p2	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr9_-_64062342_64062398	0.200048	SOX{8,9,10}.p2	AK165664|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr17_-_28046158_28046190	0.199163	SOX{8,9,10}.p2	AK133851|Taf11|68776|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr19_-_4121444_4121482	0.198525	SOX{8,9,10}.p2	BC075614|Aip|11632|aryl-hydrocarbon receptor-interacting protein	AK011609|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr14_+_70930491_70930682	0.198022	SOX{8,9,10}.p2	AK087125|Lgi3|213469|leucine-rich repeat LGI family, member 3	NM_145219|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK132296|Lgi3|213469|leucine-rich repeat LGI family, member 3	AF515590|Lgi3|213469|leucine-rich repeat LGI family, member 3	AY174077|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK049831|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK163664|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK047495|Lgi3|213469|leucine-rich repeat LGI family, member 3
mm9_v1_chrX_-_7258190_7258376	0.197555	SOX{8,9,10}.p2	BC099459|Magix|54634|MAGI family member, X-linked	NM_018832|Magix|54634|MAGI family member, X-linked	AK158091|Magix|54634|MAGI family member, X-linked	AK077898|Magix|54634|MAGI family member, X-linked
mm9_v1_chr13_-_105606826_105607032	0.197543	SOX{8,9,10}.p2	BC025437|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK077779|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK075902|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK014025|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK166770|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	NM_026072|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr13_-_61141957_61141985	0.197204	SOX{8,9,10}.p2	AY014776|Ctsq|104002|cathepsin Q	NM_029636|Ctsq|104002|cathepsin Q	BC099415|Ctsq|104002|cathepsin Q	AF456461|Ctsq|104002|cathepsin Q
mm9_v1_chr1_+_9591550_9591585	0.196806	SOX{8,9,10}.p2	BC066997|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr11_+_29640992_29641009	0.1946	SOX{8,9,10}.p2	AK206171|Rtn4|68585|reticulon 4
mm9_v1_chr12_-_111932287_111932415	0.192272	SOX{8,9,10}.p2	BC090391|Gm12346|544800|heat shock protein 1, alpha pseudogene
mm9_v1_chr11_-_62206116_62206160	0.191598	SOX{8,9,10}.p2	AK137695|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr11_+_6315729_6315787	0.190479	SOX{8,9,10}.p2	AK151583|Ppia|268373|peptidylprolyl isomerase A
mm9_v1_chrX_-_70282441_70282441	0.190083	SOX{8,9,10}.p2	AK220432|Pnma5|385377|paraneoplastic antigen family 5	NM_001100461|Pnma5|385377|paraneoplastic antigen family 5
mm9_v1_chr3_+_137806411_137806513	0.189723	SOX{8,9,10}.p2	AK089967|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK145681|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC098478|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK146481|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC090650|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	NM_175389|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC141035|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2
mm9_v1_chr14_+_102239673_102239864	0.189635	SOX{8,9,10}.p2	AK053129|Lmo7|380928|LIM domain only 7	AK143133|Lmo7|380928|LIM domain only 7	AK129231|Lmo7|380928|LIM domain only 7
mm9_v1_chr18_-_36925819_36925867	0.189067	SOX{8,9,10}.p2	AY321066|Dnd1|213236|dead end homolog 1 (zebrafish)	AK141343|Dnd1|213236|dead end homolog 1 (zebrafish)	BC034897|Dnd1|213236|dead end homolog 1 (zebrafish)	NM_173383|Dnd1|213236|dead end homolog 1 (zebrafish)
mm9_v1_chr9_+_69837253_69837421	0.188496	SOX{8,9,10}.p2	AK169609|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK054288|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	NM_016787|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK159745|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK014659|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161116|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	BC012670|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AF035207|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr9_+_123060063_123060065	0.188474	SOX{8,9,10}.p2	NM_011606|Clec3b|21922|C-type lectin domain family 3, member b
mm9_v1_chr12_-_17183693_17183693	0.188404	SOX{8,9,10}.p2	NM_201531|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr3_-_86724093_86724302	0.187198	SOX{8,9,10}.p2	AY968049|Dclk2|70762|doublecortin-like kinase 2	AY968050|Dclk2|70762|doublecortin-like kinase 2	AY968051|Dclk2|70762|doublecortin-like kinase 2	BC060192|Dclk2|70762|doublecortin-like kinase 2	AB198721|Dclk2|70762|doublecortin-like kinase 2	AK049179|Dclk2|70762|doublecortin-like kinase 2	AK049126|Dclk2|70762|doublecortin-like kinase 2	AK082633|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr4_-_149148173_149148404	0.186671	SOX{8,9,10}.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr10_-_81090064_81090088	0.186278	SOX{8,9,10}.p2	AK145929|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	NM_001163430|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)
mm9_v1_chr14_+_21537761_21537875	0.185606	SOX{8,9,10}.p2	BC027155|2310021P13Rik|268721|RIKEN cDNA 2310021P13 gene
mm9_v1_chr10_-_79807963_79807985	0.185466	SOX{8,9,10}.p2	AK154947|Adamtsl5|66548|ADAMTS-like 5
mm9_v1_chr5_+_93696645_93696792	0.184834	SOX{8,9,10}.p2	BC060180|Ccng2|12452|cyclin G2	BC088980|Ccng2|12452|cyclin G2
mm9_v1_chr3_-_88214215_88214225	0.184422	SOX{8,9,10}.p2	BC034333|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr16_+_17452048_17452310	0.184072	SOX{8,9,10}.p2	AK052315|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK048641|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	NM_007764|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK163981|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC023080|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	X90648|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131984|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131986|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm9_v1_chr17_-_24211852_24211965	0.183762	SOX{8,9,10}.p2	AK079579|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chr11_-_106576585_106576603	0.183093	SOX{8,9,10}.p2	NM_001032378|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	NM_008816|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chr8_+_108404773_108404850	0.18243	SOX{8,9,10}.p2	AK152963|Edc4|234699|enhancer of mRNA decapping 4	AK146527|Edc4|234699|enhancer of mRNA decapping 4	BC053081|Edc4|234699|enhancer of mRNA decapping 4	NM_181594|Edc4|234699|enhancer of mRNA decapping 4
mm9_v1_chr14_-_76410654_76410753	0.182277	SOX{8,9,10}.p2	BC027173|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	AK144858|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	NM_026816|Gtf2f2|68705|general transcription factor IIF, polypeptide 2
mm9_v1_chr4_+_135979438_135979444	0.182011	SOX{8,9,10}.p2	AK082016|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	NM_008309|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103532|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103536|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103535|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D
mm9_v1_chr10_+_57857120_57857135	0.181148	SOX{8,9,10}.p2	AK009390|Lims1|110829|LIM and senescent cell antigen-like domains 1	NM_001193303|Lims1|110829|LIM and senescent cell antigen-like domains 1	DQ003608|Lims1|110829|LIM and senescent cell antigen-like domains 1
mm9_v1_chr15_-_97662101_97662197	0.180503	SOX{8,9,10}.p2	BC057332|Hdac7|56233|histone deacetylase 7	NM_019572|Hdac7|56233|histone deacetylase 7	AY943912|Hdac7|56233|histone deacetylase 7
mm9_v1_chr4_+_126698539_126698547	0.179824	SOX{8,9,10}.p2	NM_023603|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr3_-_105746659_105746682	0.178716	SOX{8,9,10}.p2	U29530|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr6_-_22306070_22306242	0.178	SOX{8,9,10}.p2	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr11_+_60879305_60879305	0.17663	SOX{8,9,10}.p2	AK017299|Kcnj12|16515|potassium inwardly-rectifying channel, subfamily J, member 12	NM_010603|Kcnj12|16515|potassium inwardly-rectifying channel, subfamily J, member 12
mm9_v1_chr14_-_79647102_79647173	0.175866	SOX{8,9,10}.p2	AK139686|Zfp957|105590|zinc finger protein 957	NM_001033215|Zfp957|105590|zinc finger protein 957
mm9_v1_chr16_+_88729106_88729106	0.175577	SOX{8,9,10}.p2	BC027551|Krtap13-1|268905|keratin associated protein 13-1	NM_183189|Krtap13-1|268905|keratin associated protein 13-1
mm9_v1_chr13_+_23667631_23667670	0.174764	SOX{8,9,10}.p2	AK020421|Hist1h3d|319149|histone cluster 1, H3d	NM_178204|Hist1h3d|319149|histone cluster 1, H3d
mm9_v1_chr17_-_23923163_23923198	0.174539	SOX{8,9,10}.p2	BC024947|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr3_+_88336316_88336316	0.17395	SOX{8,9,10}.p2	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr2_-_165151935_165152001	0.173286	SOX{8,9,10}.p2	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr5_-_135096084_135096090	0.173191	SOX{8,9,10}.p2	
mm9_v1_chr8_+_114060659_114060939	0.172786	SOX{8,9,10}.p2	BC086770|Znrf1|170737|zinc and ring finger 1	AF378525|Znrf1|170737|zinc and ring finger 1	BC006765|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr3_-_27795287_27795289	0.171514	SOX{8,9,10}.p2	AK053134|Tmem212|208613|transmembrane protein 212	BC119391|Tmem212|208613|transmembrane protein 212	BC119393|Tmem212|208613|transmembrane protein 212	NM_001164437|Tmem212|208613|transmembrane protein 212
mm9_v1_chr8_+_74967757_74967859	0.170551	SOX{8,9,10}.p2	AK133815|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	NM_028170|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	BC008558|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	AK089918|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene
mm9_v1_chr12_-_71448600_71448600	0.170492	SOX{8,9,10}.p2	BC052034|Trim9|94090|tripartite motif-containing 9	NM_001110202|Trim9|94090|tripartite motif-containing 9	NM_001110203|Trim9|94090|tripartite motif-containing 9	NM_053167|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr14_-_66043991_66044045	0.170403	SOX{8,9,10}.p2	D50055|Pnoc|18155|prepronociceptin	BC119372|Pnoc|18155|prepronociceptin	BC144865|Pnoc|18155|prepronociceptin	D50056|Pnoc|18155|prepronociceptin	AK045893|Pnoc|18155|prepronociceptin	NM_010932|Pnoc|18155|prepronociceptin
mm9_v1_chr13_+_118009379_118009441	0.169035	SOX{8,9,10}.p2	NM_010330|Emb|13723|embigin	AK138271|Emb|13723|embigin	AK079570|Emb|13723|embigin
mm9_v1_chr16_-_19884312_19884367	0.168977	SOX{8,9,10}.p2	BC053981|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene	AK153879|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene	AK086168|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene
mm9_v1_chr9_-_20700331_20700394	0.168064	SOX{8,9,10}.p2	
mm9_v1_chr11_-_119409041_119409133	0.167813	SOX{8,9,10}.p2	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr18_-_46887869_46888063	0.16707	SOX{8,9,10}.p2	BC013638|Cdo1|12583|cysteine dioxygenase 1, cytosolic	BC020375|Cdo1|12583|cysteine dioxygenase 1, cytosolic	NM_033037|Cdo1|12583|cysteine dioxygenase 1, cytosolic	AK004249|Cdo1|12583|cysteine dioxygenase 1, cytosolic	AK011032|Cdo1|12583|cysteine dioxygenase 1, cytosolic	AK149582|Cdo1|12583|cysteine dioxygenase 1, cytosolic
mm9_v1_chr9_+_123060096_123060130	0.166733	SOX{8,9,10}.p2	BC035043|Clec3b|21922|C-type lectin domain family 3, member b
mm9_v1_chr10_+_20059547_20059574	0.166535	SOX{8,9,10}.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr17_-_23923018_23923069	0.165245	SOX{8,9,10}.p2	AK019378|Flywch2|76917|FLYWCH family member 2	AK013108|Flywch2|76917|FLYWCH family member 2	NM_029798|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr19_+_9041638_9041702	0.165064	SOX{8,9,10}.p2	AK050636|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK147980|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK007991|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK011951|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK011973|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK014277|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK159644|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK159768|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK168749|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK007869|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK012431|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK081859|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK145565|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK166765|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AK167831|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	AF321126|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	BC117547|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	BC118522|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	BC083071|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	BC099413|Eef1g|67160|eukaryotic translation elongation factor 1 gamma
mm9_v1_chr14_+_31832374_31832396	0.165039	SOX{8,9,10}.p2	AK030781|Pbrm1|66923|polybromo 1
mm9_v1_chr18_+_69843730_69844096	0.164994	SOX{8,9,10}.p2	AK021032|Tcf4|21413|transcription factor 4	AK047926|Tcf4|21413|transcription factor 4	AK045400|Tcf4|21413|transcription factor 4	AK083152|Tcf4|21413|transcription factor 4	AK039181|Tcf4|21413|transcription factor 4	AK040346|Tcf4|21413|transcription factor 4	AK032345|Tcf4|21413|transcription factor 4
mm9_v1_chr17_+_26389911_26389996	0.164534	SOX{8,9,10}.p2	BC055875|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	BC019194|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	AK211801|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like
mm9_v1_chr5_-_72895711_72895778	0.163738	SOX{8,9,10}.p2	BC093485|Corin|53419|corin	NM_001122756|Corin|53419|corin
mm9_v1_chr4_-_148800458_148800500	0.163116	SOX{8,9,10}.p2	BC067402|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr1_-_74634579_74634609	0.162254	SOX{8,9,10}.p2	AB093218|Zfp142|77264|zinc finger protein 142	AK020384|Zfp142|77264|zinc finger protein 142	AK132550|Zfp142|77264|zinc finger protein 142	NM_029888|Zfp142|77264|zinc finger protein 142	AK153768|Zfp142|77264|zinc finger protein 142
mm9_v1_chr6_+_55027608_55027621	0.160919	SOX{8,9,10}.p2	AK191772|Gars|353172|glycyl-tRNA synthetase
mm9_v1_chr2_+_71050002_71050098	0.16083	SOX{8,9,10}.p2	NM_001198877|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198878|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_010064|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK168730|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK088015|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK135477|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992211|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992212|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AF063231|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2
mm9_v1_chr16_+_57152994_57153228	0.160741	SOX{8,9,10}.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr8_+_37157863_37157905	0.160704	SOX{8,9,10}.p2	NM_172911|D8Ertd82e|244418|DNA segment, Chr 8, ERATO Doi 82, expressed
mm9_v1_chr7_-_86293852_86293959	0.160184	SOX{8,9,10}.p2	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr18_+_34490797_34490849	0.160137	SOX{8,9,10}.p2	AK004118|Srp19|66384|signal recognition particle 19	AK037009|Srp19|66384|signal recognition particle 19	NM_025527|Srp19|66384|signal recognition particle 19	AK010760|Srp19|66384|signal recognition particle 19	AK152322|Srp19|66384|signal recognition particle 19	AK135508|Srp19|66384|signal recognition particle 19	AK162107|Srp19|66384|signal recognition particle 19	BC051932|Srp19|66384|signal recognition particle 19	AK009412|Srp19|66384|signal recognition particle 19
mm9_v1_chr16_+_34785006_34785048	0.159774	SOX{8,9,10}.p2	AY237726|Mylk|107589|myosin, light polypeptide kinase	BC058610|Mylk|107589|myosin, light polypeptide kinase	NM_139300|Mylk|107589|myosin, light polypeptide kinase	BC145279|Mylk|107589|myosin, light polypeptide kinase	BC150749|Mylk|107589|myosin, light polypeptide kinase	BC171954|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr7_+_106530044_106530083	0.15734	SOX{8,9,10}.p2	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr6_+_65621583_65621630	0.156994	SOX{8,9,10}.p2	AK049802|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	AK029210|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	NM_172399|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	BC047154|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene
mm9_v1_chrX_-_47141382_47141419	0.156473	SOX{8,9,10}.p2	BC119264|Igsf1|209268|immunoglobulin superfamily, member 1	BC119266|Igsf1|209268|immunoglobulin superfamily, member 1	BC144762|Igsf1|209268|immunoglobulin superfamily, member 1	AK076427|Igsf1|209268|immunoglobulin superfamily, member 1	AY227774|Igsf1|209268|immunoglobulin superfamily, member 1	AK030701|Igsf1|209268|immunoglobulin superfamily, member 1	NM_183336|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chrX_+_162676910_162677002	0.155225	SOX{8,9,10}.p2	BC025165|Gpm6b|14758|glycoprotein m6b	AK016567|Gpm6b|14758|glycoprotein m6b	AK020224|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr19_+_9041526_9041530	0.15508	SOX{8,9,10}.p2	AK145519|Eef1g|67160|eukaryotic translation elongation factor 1 gamma	NM_026007|Eef1g|67160|eukaryotic translation elongation factor 1 gamma
mm9_v1_chr2_+_135883662_135883710	0.153755	SOX{8,9,10}.p2	NM_029530|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr6_-_37391993_37392195	0.153141	SOX{8,9,10}.p2	BC138470|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	BC138471|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	BC043466|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK041050|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK035695|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK036712|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK042418|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK041669|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	NM_178661|Creb3l2|208647|cAMP responsive element binding protein 3-like 2
mm9_v1_chr17_-_74723283_74723283	0.152336	SOX{8,9,10}.p2	AY297538|Dpy30|66310|dpy-30 homolog (C. elegans)	NM_024428|Dpy30|66310|dpy-30 homolog (C. elegans)
mm9_v1_chr10_+_27794664_27794727	0.151996	SOX{8,9,10}.p2	AK052275|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK019870|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr19_-_25036047_25036105	0.150981	SOX{8,9,10}.p2	BC018472|Cbwd1|226043|COBW domain containing 1	AK076027|Cbwd1|226043|COBW domain containing 1	BC053745|Cbwd1|226043|COBW domain containing 1	AK132291|Cbwd1|226043|COBW domain containing 1	NM_146097|Cbwd1|226043|COBW domain containing 1
mm9_v1_chr5_+_147762106_147762155	0.149994	SOX{8,9,10}.p2	BC032292|Gtf3a|66596|general transcription factor III A
mm9_v1_chr19_-_9162377_9162448	0.148914	SOX{8,9,10}.p2	BC027518|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	AK145844|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	NM_011681|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)
mm9_v1_chr9_+_51855254_51855279	0.148481	SOX{8,9,10}.p2	NM_001104616|Rdx|19684|radixin	AK162204|Rdx|19684|radixin
mm9_v1_chr2_-_25080099_25080153	0.148048	SOX{8,9,10}.p2	BC005547|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr12_-_59370171_59370244	0.147738	SOX{8,9,10}.p2	BC019452|Clec14a|66864|C-type lectin domain family 14, member a	AK014681|Clec14a|66864|C-type lectin domain family 14, member a	NM_025809|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr3_+_88357674_88357730	0.146373	SOX{8,9,10}.p2	AK156515|Ubqln4|94232|ubiquilin 4	AK160578|Ubqln4|94232|ubiquilin 4	BC017686|Ubqln4|94232|ubiquilin 4	AK150211|Ubqln4|94232|ubiquilin 4
mm9_v1_chr17_-_33855557_33855658	0.14424	SOX{8,9,10}.p2	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr7_-_52071027_52071027	0.143914	SOX{8,9,10}.p2	AF375476|Atf5|107503|activating transcription factor 5	NM_030693|Atf5|107503|activating transcription factor 5
mm9_v1_chr11_-_100624237_100624244	0.143704	SOX{8,9,10}.p2	BC116943|Hcrt|15171|hypocretin	BC116969|Hcrt|15171|hypocretin	AF019566|Hcrt|15171|hypocretin	AF041242|Hcrt|15171|hypocretin	NM_010410|Hcrt|15171|hypocretin
mm9_v1_chr11_+_85166665_85166722	0.143387	SOX{8,9,10}.p2	NM_001166642|Bcas3|192197|breast carcinoma amplified sequence 3	NM_001166643|Bcas3|192197|breast carcinoma amplified sequence 3	NM_138681|Bcas3|192197|breast carcinoma amplified sequence 3	AK034117|Bcas3|192197|breast carcinoma amplified sequence 3	AF313800|Bcas3|192197|breast carcinoma amplified sequence 3	BC050233|Bcas3|192197|breast carcinoma amplified sequence 3	AK160127|Bcas3|192197|breast carcinoma amplified sequence 3	BC028339|Bcas3|192197|breast carcinoma amplified sequence 3	BC086693|Bcas3|192197|breast carcinoma amplified sequence 3	BC060690|Bcas3|192197|breast carcinoma amplified sequence 3	AK171964|Bcas3|192197|breast carcinoma amplified sequence 3	AK032423|Bcas3|192197|breast carcinoma amplified sequence 3	AK157222|Bcas3|192197|breast carcinoma amplified sequence 3	BC038173|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr11_+_80290571_80290592	0.143125	SOX{8,9,10}.p2	AK043203|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK084003|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr3_+_93324437_93324454	0.142901	SOX{8,9,10}.p2	BC021916|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)
mm9_v1_chr11_-_96838940_96839063	0.141657	SOX{8,9,10}.p2	GU126673|Sp2|78912|Sp2 transcription factor	AK139302|Sp2|78912|Sp2 transcription factor	BC086457|Sp2|78912|Sp2 transcription factor	BC021759|Sp2|78912|Sp2 transcription factor	AK078246|Sp2|78912|Sp2 transcription factor	AK156580|Sp2|78912|Sp2 transcription factor	NM_001080964|Sp2|78912|Sp2 transcription factor	NM_030220|Sp2|78912|Sp2 transcription factor
mm9_v1_chr4_+_103237118_103237275	0.141606	SOX{8,9,10}.p2	BC008258|Actg1|11465|actin, gamma, cytoplasmic 1	AK184769|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr14_+_56159204_56159303	0.140783	SOX{8,9,10}.p2	AK034927|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	AK165094|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	AK161944|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	BC010318|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	BC011126|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	AK147972|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	AK170242|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)	AK031612|Pck2|74551|phosphoenolpyruvate carboxykinase 2 (mitochondrial)
mm9_v1_chr2_-_174120889_174120936	0.140735	SOX{8,9,10}.p2	AF319945|Nespas|56802|neuroendocrine secretory protein antisense	AK153813|Nespas|56802|neuroendocrine secretory protein antisense
mm9_v1_chr1_-_72906185_72906195	0.140457	SOX{8,9,10}.p2	BC037433|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr14_-_58353136_58353256	0.139137	SOX{8,9,10}.p2	AY015061|Lats2|50523|large tumor suppressor 2	AY015062|Lats2|50523|large tumor suppressor 2	AB023958|Lats2|50523|large tumor suppressor 2	BC040025|Lats2|50523|large tumor suppressor 2	NM_153382|Lats2|50523|large tumor suppressor 2
mm9_v1_chr10_+_5151833_5151833	0.139012	SOX{8,9,10}.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr15_-_98364606_98364733	0.137838	SOX{8,9,10}.p2	BC125631|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC125633|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC145047|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	NM_133714|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC003301|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK046649|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK162714|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK167429|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK168499|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK089025|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK150748|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK151604|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK152604|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK153007|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC011085|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene
mm9_v1_chr5_-_114830457_114830513	0.137818	SOX{8,9,10}.p2	AK147714|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK163351|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK161199|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK028657|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK041516|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK145295|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK166505|Kctd10|330171|potassium channel tetramerisation domain containing 10	BC006935|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_001159941|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_026145|Kctd10|330171|potassium channel tetramerisation domain containing 10
mm9_v1_chr8_-_46495890_46495935	0.136016	SOX{8,9,10}.p2	AK083977|Tlr3|142980|toll-like receptor 3	NM_126166|Tlr3|142980|toll-like receptor 3	BC099937|Tlr3|142980|toll-like receptor 3
mm9_v1_chr18_-_25327336_25327448	0.135514	SOX{8,9,10}.p2	NM_001004361|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	NM_001142698|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene
mm9_v1_chr19_+_5460588_5460693	0.134658	SOX{8,9,10}.p2	AK008093|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK028029|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK008132|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK012629|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC049284|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK019399|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC031716|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AF270700|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	NM_021438|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein
mm9_v1_chr15_+_59146590_59147021	0.13464	SOX{8,9,10}.p2	AK148419|Sqle|20775|squalene epoxidase	AK138457|Sqle|20775|squalene epoxidase	BC056361|Sqle|20775|squalene epoxidase	NM_009270|Sqle|20775|squalene epoxidase	AK161837|Sqle|20775|squalene epoxidase	AK163502|Sqle|20775|squalene epoxidase	D42048|Sqle|20775|squalene epoxidase	AK202136|Sqle|20775|squalene epoxidase
mm9_v1_chr13_-_89881914_89881931	0.134397	SOX{8,9,10}.p2	BC096495|Vcan|13003|versican	AK165069|Vcan|13003|versican	AK034871|Vcan|13003|versican	AK014525|Vcan|13003|versican
mm9_v1_chr14_-_32249046_32249246	0.134	SOX{8,9,10}.p2	AB016835|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC053741|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	NM_011894|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr2_+_177927788_177927833	0.133872	SOX{8,9,10}.p2	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr16_+_18392675_18392746	0.13327	SOX{8,9,10}.p2	AK053865|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	BC051655|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	BC026727|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	AK051627|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	AK044982|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	AF286214|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	AF286215|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm9_v1_chr10_-_49508472_49508559	0.133132	SOX{8,9,10}.p2	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr3_-_96042893_96043049	0.132337	SOX{8,9,10}.p2	BC132488|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene	BC132490|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene	NM_178216|Hist2h3c1|15077|histone cluster 2, H3c1	BC015270|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene	NM_054045|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene
mm9_v1_chr7_+_134388053_134388144	0.131998	SOX{8,9,10}.p2	BC139048|Zfp771|244216|zinc finger protein 771	BC139049|Zfp771|244216|zinc finger protein 771	BC145524|Zfp771|244216|zinc finger protein 771
mm9_v1_chr13_-_98786061_98786107	0.131559	SOX{8,9,10}.p2	AK048676|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr9_-_36954842_36954852	0.130925	SOX{8,9,10}.p2	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr1_-_93829376_93829378	0.130692	SOX{8,9,10}.p2	AK170461|Hdac4|208727|histone deacetylase 4
mm9_v1_chr5_-_20930494_20930494	0.128118	SOX{8,9,10}.p2	AK015926|Ccdc146|75172|coiled-coil domain containing 146	NM_029195|Ccdc146|75172|coiled-coil domain containing 146
mm9_v1_chr13_-_12742377_12742693	0.128007	SOX{8,9,10}.p2	AK190995|Gpr137b|83924|G protein-coupled receptor 137B	AK194643|Gpr137b|83924|G protein-coupled receptor 137B	AK198577|Gpr137b|83924|G protein-coupled receptor 137B	AK201617|Gpr137b|83924|G protein-coupled receptor 137B	AK204136|Gpr137b|83924|G protein-coupled receptor 137B	AK204647|Gpr137b|83924|G protein-coupled receptor 137B	AK195847|Gpr137b|83924|G protein-coupled receptor 137B	AK170650|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	BC093499|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AF154337|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK009736|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK170103|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK087190|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK171335|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK010724|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene
mm9_v1_chr6_+_81991613_81991706	0.127857	SOX{8,9,10}.p2	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr19_-_5729623_5729695	0.127717	SOX{8,9,10}.p2	BC030163|Fam89b|17826|family with sequence similarity 89, member B	AK013256|Fam89b|17826|family with sequence similarity 89, member B	AF212921|Fam89b|17826|family with sequence similarity 89, member B	BC013894|Fam89b|17826|family with sequence similarity 89, member B	AF212920|Fam89b|17826|family with sequence similarity 89, member B	AB012726|Fam89b|17826|family with sequence similarity 89, member B	BC056166|Fam89b|17826|family with sequence similarity 89, member B	AK003883|Fam89b|17826|family with sequence similarity 89, member B	NM_023166|Fam89b|17826|family with sequence similarity 89, member B	NM_181452|Fam89b|17826|family with sequence similarity 89, member B
mm9_v1_chr10_-_80499974_80500080	0.127228	SOX{8,9,10}.p2	BC085175|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3	AK087519|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3
mm9_v1_chr10_+_98725858_98725868	0.127112	SOX{8,9,10}.p2	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr7_-_140179678_140180024	0.126992	SOX{8,9,10}.p2	AK187460|Ctbp2|13017|C-terminal binding protein 2	AK161077|Ctbp2|13017|C-terminal binding protein 2	AK198744|Ctbp2|13017|C-terminal binding protein 2	AK199198|Ctbp2|13017|C-terminal binding protein 2	AK201071|Ctbp2|13017|C-terminal binding protein 2	AK217772|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr4_+_43419445_43419451	0.126834	SOX{8,9,10}.p2	AK132170|Rusc2|100213|RUN and SH3 domain containing 2	NM_199057|Rusc2|100213|RUN and SH3 domain containing 2	AK122263|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr13_+_27893522_27893571	0.126358	SOX{8,9,10}.p2	AB032428|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF234636|Prl2a1|56635|prolactin family 2, subfamily a, member 1	NM_019991|Prl2a1|56635|prolactin family 2, subfamily a, member 1	BC099458|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AK005424|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF226610|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF272368|Prl2a1|56635|prolactin family 2, subfamily a, member 1
mm9_v1_chr17_-_46169322_46169332	0.126152	SOX{8,9,10}.p2	NM_001025250|Vegfa|22339|vascular endothelial growth factor A	NM_001025257|Vegfa|22339|vascular endothelial growth factor A	NM_009505|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr7_+_134388006_134388047	0.123793	SOX{8,9,10}.p2	AK090240|Zfp771|244216|zinc finger protein 771	NM_177362|Zfp771|244216|zinc finger protein 771	AK159461|Zfp771|244216|zinc finger protein 771
mm9_v1_chr18_-_25327116_25327212	0.123733	SOX{8,9,10}.p2	BC080777|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK017728|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK160220|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK141632|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene
mm9_v1_chrX_+_97972559_97972657	0.123198	SOX{8,9,10}.p2	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr15_-_102552494_102552522	0.12294	SOX{8,9,10}.p2	AK018734|Calcoco1|67488|calcium binding and coiled coil domain 1	AK007393|Calcoco1|67488|calcium binding and coiled coil domain 1	BC054783|Calcoco1|67488|calcium binding and coiled coil domain 1	AK220400|Calcoco1|67488|calcium binding and coiled coil domain 1	AK035598|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr7_+_109054350_109054514	0.122647	SOX{8,9,10}.p2	NM_025605|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK010247|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK013389|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC126973|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK144476|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC020142|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK003509|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC092062|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK009320|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC096412|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK019947|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK203171|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene
mm9_v1_chr2_+_71049762_71049900	0.122338	SOX{8,9,10}.p2	NM_001198872|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198873|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198874|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198875|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198876|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK019441|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK141837|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK150173|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK164322|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK164437|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992208|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992209|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992210|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2
mm9_v1_chr11_+_35583304_35583391	0.122246	SOX{8,9,10}.p2	AK136305|Pank3|211347|pantothenate kinase 3	BC027089|Pank3|211347|pantothenate kinase 3
mm9_v1_chr10_-_116387419_116387512	0.120305	SOX{8,9,10}.p2	BC080289|Rab3ip|216363|RAB3A interacting protein	NM_001003950|Rab3ip|216363|RAB3A interacting protein	AK152122|Rab3ip|216363|RAB3A interacting protein
mm9_v1_chr7_-_147298872_147298960	0.12017	SOX{8,9,10}.p2	BC057971|Echs1|93747|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	AK210204|Echs1|93747|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm9_v1_chr10_-_86164623_86164759	0.11908	SOX{8,9,10}.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr15_-_98313113_98313113	0.118045	SOX{8,9,10}.p2	BC006922|Lalba|16770|lactalbumin, alpha	BC069916|Lalba|16770|lactalbumin, alpha	M80909|Lalba|16770|lactalbumin, alpha	NM_010679|Lalba|16770|lactalbumin, alpha
mm9_v1_chr5_+_151476361_151476427	0.117446	SOX{8,9,10}.p2	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr2_+_145611851_145611951	0.117321	SOX{8,9,10}.p2	NM_028724|Rin2|74030|Ras and Rab interactor 2	BC040390|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr4_+_123594712_123594800	0.115109	SOX{8,9,10}.p2	BC071245|Rragc|54170|Ras-related GTP binding C	AK150792|Rragc|54170|Ras-related GTP binding C	AK159434|Rragc|54170|Ras-related GTP binding C	BC005417|Rragc|54170|Ras-related GTP binding C	AK166658|Rragc|54170|Ras-related GTP binding C	AK159355|Rragc|54170|Ras-related GTP binding C	AB017616|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr11_+_102291759_102291826	0.115089	SOX{8,9,10}.p2	AK018744|Grn|14824|granulin	AK013678|Grn|14824|granulin	AK147932|Grn|14824|granulin	AK149570|Grn|14824|granulin	AK150205|Grn|14824|granulin	AK150746|Grn|14824|granulin	AK150881|Grn|14824|granulin	AK151007|Grn|14824|granulin	AK151162|Grn|14824|granulin	AK151343|Grn|14824|granulin	AK151713|Grn|14824|granulin	AK152048|Grn|14824|granulin	AK152087|Grn|14824|granulin	AK152705|Grn|14824|granulin	AK152765|Grn|14824|granulin	AK153269|Grn|14824|granulin	AK153289|Grn|14824|granulin	AK153418|Grn|14824|granulin	AK153470|Grn|14824|granulin	AK154492|Grn|14824|granulin	AK160033|Grn|14824|granulin	AK159809|Grn|14824|granulin	AK150125|Grn|14824|granulin	AK151756|Grn|14824|granulin	AK150717|Grn|14824|granulin	AK159557|Grn|14824|granulin
mm9_v1_chr6_+_79968948_79969041	0.11353	SOX{8,9,10}.p2	BC037216|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4	AK038656|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr11_+_97564712_97564785	0.113272	SOX{8,9,10}.p2	AK153162|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK002331|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	NM_011971|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK050108|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK080755|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK010488|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	BC014783|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AF060092|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3
mm9_v1_chr17_-_45705824_45706064	0.113179	SOX{8,9,10}.p2	S46109|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr15_+_34425046_34425096	0.112466	SOX{8,9,10}.p2	NM_026340|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	NM_152894|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	AK016547|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	BC034742|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	AK018297|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
mm9_v1_chr6_+_133479206_133479206	0.112377	SOX{8,9,10}.p2	NM_001185040|Gm5885|545884|predicted gene 5885
mm9_v1_chrX_-_149078963_149079085	0.112235	SOX{8,9,10}.p2	AK029338|Shroom2|110380|shroom family member 2	AK032256|Shroom2|110380|shroom family member 2	AK049850|Shroom2|110380|shroom family member 2	BC092373|Shroom2|110380|shroom family member 2
mm9_v1_chr2_+_150735306_150735352	0.111773	SOX{8,9,10}.p2	NM_001163476|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	NM_027014|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	AK013116|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	BC027537|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)
mm9_v1_chr4_+_109015660_109015680	0.111464	SOX{8,9,10}.p2	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr1_-_180259336_180259529	0.111037	SOX{8,9,10}.p2	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr17_+_46783180_46783244	0.110934	SOX{8,9,10}.p2	NM_025302|Mrpl2|27398|mitochondrial ribosomal protein L2	AK007672|Mrpl2|27398|mitochondrial ribosomal protein L2	AK009521|Mrpl2|27398|mitochondrial ribosomal protein L2	BC027762|Mrpl2|27398|mitochondrial ribosomal protein L2
mm9_v1_chr5_+_110425526_110425559	0.11074	SOX{8,9,10}.p2	AK009062|Zfp932|69504|zinc finger protein 932	NM_145563|Zfp932|69504|zinc finger protein 932	BC012405|Zfp932|69504|zinc finger protein 932
mm9_v1_chr3_-_81949667_81949798	0.110319	SOX{8,9,10}.p2	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr17_-_46168654_46168719	0.110226	SOX{8,9,10}.p2	AY707864|Vegfa|22339|vascular endothelial growth factor A	AY750956|Vegfa|22339|vascular endothelial growth factor A	AY750957|Vegfa|22339|vascular endothelial growth factor A	EF028705|Vegfa|22339|vascular endothelial growth factor A	BC061468|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr3_-_88214230_88214284	0.109232	SOX{8,9,10}.p2	BC037139|Pmf1|67037|polyamine-modulated factor 1	BC049223|Pmf1|67037|polyamine-modulated factor 1	AK011174|Pmf1|67037|polyamine-modulated factor 1	AK012113|Pmf1|67037|polyamine-modulated factor 1	AK168200|Pmf1|67037|polyamine-modulated factor 1	NM_025928|Pmf1|67037|polyamine-modulated factor 1	AK013787|Pmf1|67037|polyamine-modulated factor 1	AF348509|Pmf1|67037|polyamine-modulated factor 1	AF348510|Pmf1|67037|polyamine-modulated factor 1	AK150603|Pmf1|67037|polyamine-modulated factor 1	AK078308|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr7_+_117266253_117266328	0.108985	SOX{8,9,10}.p2	AK039572|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr5_-_108304062_108304125	0.107814	SOX{8,9,10}.p2	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr1_+_42752608_42752622	0.107396	SOX{8,9,10}.p2	
mm9_v1_chr1_+_136079079_136079104	0.106111	SOX{8,9,10}.p2	CT010283|Chi3l1|12654|chitinase 3-like 1	EU313768|Chi3l1|12654|chitinase 3-like 1
mm9_v1_chr5_+_23899973_23899973	0.105713	SOX{8,9,10}.p2	BC015301|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	NM_029020|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr11_-_106576380_106576409	0.105657	SOX{8,9,10}.p2	BC085502|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chr15_-_101524677_101524737	0.105042	SOX{8,9,10}.p2	BC122884|Krt6b|16688|keratin 6B	BC124556|Krt6b|16688|keratin 6B	BC119554|Krt6b|16688|keratin 6B	BC119555|Krt6b|16688|keratin 6B	BC139807|Krt6b|16688|keratin 6B	BC064470|Krt6a|16687|keratin 6A	K02108|Krt6a|16687|keratin 6A	BC080820|Krt6a|16687|keratin 6A	NM_008476|Krt6a|16687|keratin 6A	AK009394|Krt6a|16687|keratin 6A
mm9_v1_chr12_+_4850108_4850199	0.10436	SOX{8,9,10}.p2	NM_001170858|BC068281|238037|cDNA sequence BC068281	NM_173416|BC068281|238037|cDNA sequence BC068281	AK163398|BC068281|238037|cDNA sequence BC068281	AK040407|BC068281|238037|cDNA sequence BC068281	BC068281|BC068281|238037|cDNA sequence BC068281	AK155130|BC068281|238037|cDNA sequence BC068281	AK164024|BC068281|238037|cDNA sequence BC068281
mm9_v1_chr2_-_26927606_26927684	0.103906	SOX{8,9,10}.p2	BC062145|Tmem8c|66139|transmembrane protein 8C	AK004477|Tmem8c|66139|transmembrane protein 8C	AK003298|Tmem8c|66139|transmembrane protein 8C	NM_025376|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chr2_-_26495749_26495770	0.103665	SOX{8,9,10}.p2	BC046478|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK011283|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK028166|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7
mm9_v1_chr1_+_161162285_161162568	0.10328	SOX{8,9,10}.p2	BC082804|Rfwd2|26374|ring finger and WD repeat domain 2	NM_011931|Rfwd2|26374|ring finger and WD repeat domain 2	BC051565|Rfwd2|26374|ring finger and WD repeat domain 2	BC158002|Rfwd2|26374|ring finger and WD repeat domain 2	AF151110|Rfwd2|26374|ring finger and WD repeat domain 2
mm9_v1_chr3_+_88357635_88357640	0.103008	SOX{8,9,10}.p2	AB040050|Ubqln4|94232|ubiquilin 4	NM_033526|Ubqln4|94232|ubiquilin 4
mm9_v1_chr14_-_51536045_51536047	0.102069	SOX{8,9,10}.p2	AK207563|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr15_+_99532698_99532771	0.10197	SOX{8,9,10}.p2	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr4_-_136965705_136965705	0.101785	SOX{8,9,10}.p2	NM_001126318|Gm13011|242711|predicted gene 13011
mm9_v1_chr15_+_95621222_95621461	0.101384	SOX{8,9,10}.p2	BC060732|Ano6|105722|anoctamin 6	NM_175344|Ano6|105722|anoctamin 6	AK159411|Ano6|105722|anoctamin 6	AK089300|Ano6|105722|anoctamin 6
mm9_v1_chr4_+_43506226_43506287	0.10127	SOX{8,9,10}.p2	AK004044|Ccdc107|622404|coiled-coil domain containing 107	BC027414|Ccdc107|622404|coiled-coil domain containing 107	AK002915|Ccdc107|622404|coiled-coil domain containing 107	NM_001037913|Ccdc107|622404|coiled-coil domain containing 107
mm9_v1_chr19_-_8040489_8040530	0.101262	SOX{8,9,10}.p2	AB056443|AB056442|171405|cDNA sequence AB056442	AB056442|AB056442|171405|cDNA sequence AB056442	NM_134256|AB056442|171405|cDNA sequence AB056442
mm9_v1_chr2_+_163264188_163264268	0.100556	SOX{8,9,10}.p2	NM_144891|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK164991|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK140488|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK141371|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	BC019941|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1
mm9_v1_chr3_-_95686120_95686174	0.100287	SOX{8,9,10}.p2	AK156084|Gm129|229599|predicted gene 129	AK164001|Gm129|229599|predicted gene 129	NM_001033302|Gm129|229599|predicted gene 129
mm9_v1_chr6_-_18464737_18464763	0.0998647	SOX{8,9,10}.p2	BC068156|Cttnbp2|30785|cortactin binding protein 2	AK021092|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr15_-_102552527_102552608	0.0989471	SOX{8,9,10}.p2	AK087513|Calcoco1|67488|calcium binding and coiled coil domain 1	NM_026192|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr9_-_102256962_102257026	0.0963369	SOX{8,9,10}.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr16_+_94792513_94792513	0.0962341	SOX{8,9,10}.p2	NM_001113389|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr2_-_25079684_25079784	0.0960245	SOX{8,9,10}.p2	AK006924|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr2_+_80479420_80479420	0.0959013	SOX{8,9,10}.p2	NM_001190179|Nup35|69482|nucleoporin 35
mm9_v1_chr5_-_72049058_72049225	0.094724	SOX{8,9,10}.p2	AK079551|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK043806|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK137354|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK162893|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	BC094603|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK139970|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr15_+_76287867_76288031	0.0945142	SOX{8,9,10}.p2	NM_198885|Scx|20289|scleraxis	S78079|Scx|20289|scleraxis	AK013456|Scx|20289|scleraxis	BC062161|Scx|20289|scleraxis	AB221642|Scx|20289|scleraxis
mm9_v1_chr12_-_20927090_20927126	0.094266	SOX{8,9,10}.p2	AK148766|3110053B16Rik|382686|RIKEN cDNA 3110053B16 gene	AK086127|3110053B16Rik|382686|RIKEN cDNA 3110053B16 gene
mm9_v1_chr19_-_60302398_60302548	0.0933565	SOX{8,9,10}.p2	BC061459|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK162079|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr19_+_53384990_53385011	0.0917201	SOX{8,9,10}.p2	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr5_+_34974750_34974884	0.0903854	SOX{8,9,10}.p2	
mm9_v1_chr8_+_114060341_114060576	0.0899676	SOX{8,9,10}.p2	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr3_+_88125464_88125582	0.0894691	SOX{8,9,10}.p2	
mm9_v1_chr18_-_14131046_14131241	0.0888309	SOX{8,9,10}.p2	BC021376|Zfp521|225207|zinc finger protein 521	AK052655|Zfp521|225207|zinc finger protein 521	AY147406|Zfp521|225207|zinc finger protein 521	NM_145492|Zfp521|225207|zinc finger protein 521
mm9_v1_chr2_+_69877182_69877182	0.0884949	SOX{8,9,10}.p2	NM_177376|Myo3b|329421|myosin IIIB
mm9_v1_chr6_+_73221007_73221091	0.0881402	SOX{8,9,10}.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr12_+_101437735_101437896	0.0858483	SOX{8,9,10}.p2	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr8_-_89996089_89996284	0.0850913	SOX{8,9,10}.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr8_+_11728104_11728202	0.084915	SOX{8,9,10}.p2	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr6_-_83486194_83486260	0.0848948	SOX{8,9,10}.p2	AK146631|Actg2|11468|actin, gamma 2, smooth muscle, enteric	AK168649|Actg2|11468|actin, gamma 2, smooth muscle, enteric	BC002042|Actg2|11468|actin, gamma 2, smooth muscle, enteric	NM_009610|Actg2|11468|actin, gamma 2, smooth muscle, enteric
mm9_v1_chr12_-_59369884_59369920	0.0848098	SOX{8,9,10}.p2	AK004557|Clec14a|66864|C-type lectin domain family 14, member a	AK033733|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr19_-_4007587_4007601	0.0847186	SOX{8,9,10}.p2	
mm9_v1_chr4_-_151692589_151692733	0.0840443	SOX{8,9,10}.p2	BC023223|Rnf207|433809|ring finger protein 207	BC141256|Rnf207|433809|ring finger protein 207	BC141257|Rnf207|433809|ring finger protein 207	AK042379|Rnf207|433809|ring finger protein 207	BC022631|Rnf207|433809|ring finger protein 207	AK052224|Rnf207|433809|ring finger protein 207	NM_001033489|Rnf207|433809|ring finger protein 207
mm9_v1_chr14_+_31832340_31832345	0.0838718	SOX{8,9,10}.p2	AK166588|Pbrm1|66923|polybromo 1
mm9_v1_chr17_+_26389892_26389910	0.0825059	SOX{8,9,10}.p2	AK017655|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	AK007781|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	AK010539|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like
mm9_v1_chr6_+_129462572_129462636	0.0821075	SOX{8,9,10}.p2	AK085389|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	NM_001081186|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	AK085571|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene
mm9_v1_chr11_+_20531941_20532003	0.08134	SOX{8,9,10}.p2	AK146621|Sertad2|58172|SERTA domain containing 2	NM_001038625|Sertad2|58172|SERTA domain containing 2	AK146897|Sertad2|58172|SERTA domain containing 2	AK132846|Sertad2|58172|SERTA domain containing 2	AK142018|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr13_-_64376186_64376295	0.0808602	SOX{8,9,10}.p2	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr1_-_153347884_153348127	0.0808281	SOX{8,9,10}.p2	BC020122|Rnf2|19821|ring finger protein 2	AK090066|Rnf2|19821|ring finger protein 2	AK013124|Rnf2|19821|ring finger protein 2	AK030319|Rnf2|19821|ring finger protein 2	AK012358|Rnf2|19821|ring finger protein 2	NM_011277|Rnf2|19821|ring finger protein 2	AK145767|Rnf2|19821|ring finger protein 2
mm9_v1_chr16_-_90934985_90935126	0.080332	SOX{8,9,10}.p2	AK003413|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	BC019533|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK018510|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK045905|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	NM_026502|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene
mm9_v1_chr15_-_76554119_76554177	0.0798609	SOX{8,9,10}.p2	AK186599|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr17_+_85356080_85356080	0.0791439	SOX{8,9,10}.p2	AK076923|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	NM_001159497|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform
mm9_v1_chr8_-_83263323_83263359	0.0788833	SOX{8,9,10}.p2	AK153789|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	BC053069|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	NM_053124|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm9_v1_chrX_+_71550669_71550710	0.0786846	SOX{8,9,10}.p2	BC013758|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AF251042|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK209882|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK179895|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK205324|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206024|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206073|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr3_+_88373199_88373199	0.0777995	SOX{8,9,10}.p2	AK207994|Ubqln4|94232|ubiquilin 4
mm9_v1_chr7_+_18595237_18595250	0.0776505	SOX{8,9,10}.p2	AK005537|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	NM_027210|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	NM_028171|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	AK146045|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	AK005430|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	BC099430|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13
mm9_v1_chr17_-_13102778_13102865	0.0776121	SOX{8,9,10}.p2	BC158033|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	BC172002|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	NM_001034866|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1
mm9_v1_chrX_-_7258126_7258153	0.0775414	SOX{8,9,10}.p2	BC132580|Magix|54634|MAGI family member, X-linked	BC132582|Magix|54634|MAGI family member, X-linked
mm9_v1_chr3_+_55586431_55586482	0.0768469	SOX{8,9,10}.p2	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr10_+_82359714_82359858	0.0747602	SOX{8,9,10}.p2	AK007891|Txnrd1|50493|thioredoxin reductase 1	AK202828|Txnrd1|50493|thioredoxin reductase 1	AK204569|Txnrd1|50493|thioredoxin reductase 1	AK217830|Txnrd1|50493|thioredoxin reductase 1	AK194198|Txnrd1|50493|thioredoxin reductase 1	AK203123|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr4_-_117807482_117807555	0.0744953	SOX{8,9,10}.p2	AK013016|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK005053|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_009176|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK136442|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	BC006710|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_001161774|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
mm9_v1_chr5_+_119214935_119215085	0.0742188	SOX{8,9,10}.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr8_-_74967581_74967676	0.072611	SOX{8,9,10}.p2	AB206786|Calr3|73316|calreticulin 3	AK006582|Calr3|73316|calreticulin 3	NM_028500|Calr3|73316|calreticulin 3
mm9_v1_chr11_-_101646571_101646623	0.0719987	SOX{8,9,10}.p2	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr18_-_60661636_60661640	0.0718064	SOX{8,9,10}.p2	NM_134133|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AK143383|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene
mm9_v1_chr9_+_108419410_108419495	0.0713585	SOX{8,9,10}.p2	NM_001114119|Qrich1|69232|glutamine-rich 1	NM_175143|Qrich1|69232|glutamine-rich 1	AK083212|Qrich1|69232|glutamine-rich 1	BC006738|Qrich1|69232|glutamine-rich 1	AK151491|Qrich1|69232|glutamine-rich 1	AK151530|Qrich1|69232|glutamine-rich 1	BC120915|Qrich1|69232|glutamine-rich 1	BC120916|Qrich1|69232|glutamine-rich 1
mm9_v1_chr3_-_88897207_88897284	0.0703285	SOX{8,9,10}.p2	AK039664|Rusc1|72296|RUN and SH3 domain containing 1	BC056360|Rusc1|72296|RUN and SH3 domain containing 1	AK042689|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083807|Rusc1|72296|RUN and SH3 domain containing 1	NM_028188|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr4_+_133036046_133036100	0.0702254	SOX{8,9,10}.p2	AK137659|Fam46b|100342|family with sequence similarity 46, member B	NM_175307|Fam46b|100342|family with sequence similarity 46, member B	AK163215|Fam46b|100342|family with sequence similarity 46, member B	AK028944|Fam46b|100342|family with sequence similarity 46, member B	AK135706|Fam46b|100342|family with sequence similarity 46, member B	BC038001|Fam46b|100342|family with sequence similarity 46, member B
mm9_v1_chr11_-_69761489_69761691	0.0696973	SOX{8,9,10}.p2	AB008453|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	M23383|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	BC014282|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK138832|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK164310|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK137607|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK160882|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	NM_009204|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4
mm9_v1_chr18_+_37581071_37581102	0.0693883	SOX{8,9,10}.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr4_-_24778203_24778245	0.0692689	SOX{8,9,10}.p2	AK134944|Klhl32|212390|kelch-like 32 (Drosophila)	NM_001033531|Klhl32|212390|kelch-like 32 (Drosophila)	NM_001163020|Klhl32|212390|kelch-like 32 (Drosophila)
mm9_v1_chr16_+_17276384_17276419	0.0686424	SOX{8,9,10}.p2	NM_177473|Tmem191c|224019|transmembrane protein 191C	AK016675|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr17_-_13108931_13109013	0.0674705	SOX{8,9,10}.p2	BC011425|Mrpl18|67681|mitochondrial ribosomal protein L18	AK008680|Mrpl18|67681|mitochondrial ribosomal protein L18	NM_026310|Mrpl18|67681|mitochondrial ribosomal protein L18	AK003104|Mrpl18|67681|mitochondrial ribosomal protein L18	AK010150|Mrpl18|67681|mitochondrial ribosomal protein L18
mm9_v1_chr2_-_151799566_151799709	0.0671876	SOX{8,9,10}.p2	AJ277454|Fam110a|73847|family with sequence similarity 110, member A	BC018162|Fam110a|73847|family with sequence similarity 110, member A	NM_028666|Fam110a|73847|family with sequence similarity 110, member A
mm9_v1_chrX_+_154137049_154137065	0.0661166	SOX{8,9,10}.p2	AJ245772|Smpx|66106|small muscle protein, X-linked	NM_025357|Smpx|66106|small muscle protein, X-linked	AK009857|Smpx|66106|small muscle protein, X-linked	AK010172|Smpx|66106|small muscle protein, X-linked	AY026524|Smpx|66106|small muscle protein, X-linked	AK003105|Smpx|66106|small muscle protein, X-linked	AF364070|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr11_-_97883716_97883773	0.0659021	SOX{8,9,10}.p2	AF068898|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094172|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094173|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr11_+_116060160_116060223	0.0658041	SOX{8,9,10}.p2	NM_027107|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK146257|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK009156|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	BC027639|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene
mm9_v1_chr7_-_29692382_29692403	0.0645868	SOX{8,9,10}.p2	AK030237|Actn4|60595|actinin alpha 4
mm9_v1_chr12_-_81861527_81861701	0.0641805	SOX{8,9,10}.p2	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr17_+_29178771_29178812	0.0637822	SOX{8,9,10}.p2	
mm9_v1_chr11_+_87574041_87574047	0.0633849	SOX{8,9,10}.p2	AK043747|Bzrap1|207777|benzodiazepine receptor associated protein 1	NM_172449|Bzrap1|207777|benzodiazepine receptor associated protein 1
mm9_v1_chr2_+_173603706_173603746	0.0628771	SOX{8,9,10}.p2	BC024562|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK205322|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK182293|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr15_+_99532787_99532913	0.0625234	SOX{8,9,10}.p2	BC026783|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr3_-_116510948_116511083	0.0623074	SOX{8,9,10}.p2	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr5_-_93611701_93611836	0.0619244	SOX{8,9,10}.p2	
mm9_v1_chrX_+_45976982_45977308	0.0618621	SOX{8,9,10}.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr15_-_98762108_98762276	0.0617705	SOX{8,9,10}.p2	AK203041|Tuba1b|22143|tubulin, alpha 1B	AK199828|Tuba1b|22143|tubulin, alpha 1B	AK194222|Tuba1b|22143|tubulin, alpha 1B	AK194839|Tuba1b|22143|tubulin, alpha 1B	AK194180|Tuba1b|22143|tubulin, alpha 1B	AK200029|Tuba1b|22143|tubulin, alpha 1B	AK197610|Tuba1b|22143|tubulin, alpha 1B	AK200084|Tuba1b|22143|tubulin, alpha 1B
mm9_v1_chr1_+_9591492_9591529	0.0616603	SOX{8,9,10}.p2	AK043576|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr5_-_143665474_143665607	0.0614994	SOX{8,9,10}.p2	
mm9_v1_chr18_-_62915799_62916000	0.0614383	SOX{8,9,10}.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr17_+_26389850_26389887	0.0613935	SOX{8,9,10}.p2	AK160293|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_025881|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_028190|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like
mm9_v1_chr12_+_85350438_85350464	0.0613799	SOX{8,9,10}.p2	AK053680|Acot1|26897|acyl-CoA thioesterase 1	BC028261|Acot1|26897|acyl-CoA thioesterase 1	NM_012006|Acot1|26897|acyl-CoA thioesterase 1	Y14004|Acot1|26897|acyl-CoA thioesterase 1	BC003911|Acot1|26897|acyl-CoA thioesterase 1
mm9_v1_chr10_-_87937335_87937390	0.060608	SOX{8,9,10}.p2	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr17_-_45705198_45705339	0.060315	SOX{8,9,10}.p2	AK192311|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr11_-_106576550_106576578	0.060179	SOX{8,9,10}.p2	AK084527|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	AK169431|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	BC008519|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chr5_+_93696566_93696638	0.0601699	SOX{8,9,10}.p2	NM_007635|Ccng2|12452|cyclin G2	AK170651|Ccng2|12452|cyclin G2	AF005885|Ccng2|12452|cyclin G2
mm9_v1_chr11_+_97565100_97565174	0.0600813	SOX{8,9,10}.p2	BC098233|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3
mm9_v1_chr5_-_132014556_132014581	0.0597056	SOX{8,9,10}.p2	BC066072|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr2_-_120676125_120676339	0.0592219	SOX{8,9,10}.p2	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr17_+_8533573_8533603	0.0588567	SOX{8,9,10}.p2	AK039752|Prr18|320111|proline rich region 18	NM_178774|Prr18|320111|proline rich region 18
mm9_v1_chr7_-_17613079_17613266	0.0571499	SOX{8,9,10}.p2	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr3_+_137527575_137527613	0.0560307	SOX{8,9,10}.p2	BC147478|H2afz|51788|H2A histone family, member Z	BC158035|H2afz|51788|H2A histone family, member Z	BC171999|H2afz|51788|H2A histone family, member Z
mm9_v1_chr5_-_122907269_122907331	0.0555802	SOX{8,9,10}.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr11_-_6505567_6505609	0.0555482	SOX{8,9,10}.p2	AB182283|Nacad|192950|NAC alpha domain containing	AK046108|Nacad|192950|NAC alpha domain containing
mm9_v1_chr9_+_20447321_20447371	0.0551863	SOX{8,9,10}.p2	AK154036|Ubl5|66177|ubiquitin-like 5
mm9_v1_chr19_-_7180162_7180222	0.055056	SOX{8,9,10}.p2	AY495668|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	AK031503|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	NM_201411|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	BC070403|Flrt1|396184|fibronectin leucine rich transmembrane protein 1
mm9_v1_chr2_-_37502738_37502804	0.0549948	SOX{8,9,10}.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr10_+_80392814_80392835	0.0547057	SOX{8,9,10}.p2	AK154952|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK010420|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK149895|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	BC023815|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	NM_008655|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	X54149|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta
mm9_v1_chr4_-_147533696_147533703	0.0510414	SOX{8,9,10}.p2	NM_001161851|Fbxo44|230903|F-box protein 44
mm9_v1_chr11_-_100480893_100481114	0.0510002	SOX{8,9,10}.p2	AY323828|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AB028861|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AK011875|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AK145506|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AK145739|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AK166872|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	AK076032|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	BC023681|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7
mm9_v1_chr7_-_54387695_54387755	0.0506133	SOX{8,9,10}.p2	BC057339|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC051975|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	AK038416|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr2_-_22751051_22751075	0.0505181	SOX{8,9,10}.p2	AK079472|A130006I12Rik|319264|RIKEN cDNA A130006I12 gene
mm9_v1_chr8_+_112229987_112229987	0.0498799	SOX{8,9,10}.p2	BC059014|Zfp821|75871|zinc finger protein 821	NM_029468|Zfp821|75871|zinc finger protein 821
mm9_v1_chr11_-_69575192_69575469	0.0493949	SOX{8,9,10}.p2	AF016712|Amac1|56293|acyl-malonyl condensing enzyme 1	BC137893|Amac1|56293|acyl-malonyl condensing enzyme 1	BC137894|Amac1|56293|acyl-malonyl condensing enzyme 1	NM_019871|Amac1|56293|acyl-malonyl condensing enzyme 1	AK077181|Amac1|56293|acyl-malonyl condensing enzyme 1
mm9_v1_chr18_+_83084023_83084023	0.0492134	SOX{8,9,10}.p2	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr15_-_76554192_76554281	0.0491125	SOX{8,9,10}.p2	AK046662|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC026997|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC019462|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK053546|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK163615|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK021050|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK165937|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK075645|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK085641|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140368|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140578|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_145472|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_176828|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr9_-_20447047_20447249	0.0490625	SOX{8,9,10}.p2	AF176525|Fbxl12|30843|F-box and leucine-rich repeat protein 12	BC054471|Fbxl12|30843|F-box and leucine-rich repeat protein 12	NM_013911|Fbxl12|30843|F-box and leucine-rich repeat protein 12
mm9_v1_chr4_+_130125551_130125648	0.0489039	SOX{8,9,10}.p2	AK011164|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	EF058048|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr10_+_98453513_98453709	0.0485931	SOX{8,9,10}.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr5_+_23900197_23900242	0.0484315	SOX{8,9,10}.p2	AK014688|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK076315|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK049152|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK166704|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK170334|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK014319|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK030624|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK038760|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr3_-_146433200_146433208	0.0468946	SOX{8,9,10}.p2	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr17_-_33897238_33897260	0.0465004	SOX{8,9,10}.p2	BC085270|Rab11b|19326|RAB11B, member RAS oncogene family	AK146460|Rab11b|19326|RAB11B, member RAS oncogene family	AK146623|Rab11b|19326|RAB11B, member RAS oncogene family	L26528|Rab11b|19326|RAB11B, member RAS oncogene family	BC054753|Rab11b|19326|RAB11B, member RAS oncogene family	AK134125|Rab11b|19326|RAB11B, member RAS oncogene family	BC157916|Rab11b|19326|RAB11B, member RAS oncogene family	AK147077|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr13_+_33341476_33341506	0.0463911	SOX{8,9,10}.p2	AK049429|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	NM_011456|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC050060|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	U96709|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC145592|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC145593|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e
mm9_v1_chr12_+_101122706_101122828	0.0455373	SOX{8,9,10}.p2	NM_028354|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK033868|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK014855|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK088990|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK137004|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK079006|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1
mm9_v1_chr6_+_90057268_90057269	0.0444689	SOX{8,9,10}.p2	BC107183|Vmn1r50|113852|vomeronasal 1 receptor 50	NM_053225|Vmn1r50|113852|vomeronasal 1 receptor 50	BC115706|Vmn1r50|113852|vomeronasal 1 receptor 50
mm9_v1_chr7_-_19242050_19242073	0.0443447	SOX{8,9,10}.p2	BC100324|Psg21|72242|pregnancy-specific glycoprotein 21	BC100325|Psg21|72242|pregnancy-specific glycoprotein 21	AK005540|Psg21|72242|pregnancy-specific glycoprotein 21	AK005492|Psg21|72242|pregnancy-specific glycoprotein 21	AK005545|Psg21|72242|pregnancy-specific glycoprotein 21	AK131670|Psg21|72242|pregnancy-specific glycoprotein 21	NM_027403|Psg21|72242|pregnancy-specific glycoprotein 21
mm9_v1_chr2_+_34262372_34262384	0.0440027	SOX{8,9,10}.p2	AK042154|Mapkap1|227743|mitogen-activated protein kinase associated protein 1	AK148428|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr15_-_95358989_95359075	0.0437863	SOX{8,9,10}.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr5_-_22056086_22056211	0.0437859	SOX{8,9,10}.p2	AK166537|Orc5|26429|origin recognition complex, subunit 5	AK169683|Orc5|26429|origin recognition complex, subunit 5	AJ007360|Orc5|26429|origin recognition complex, subunit 5	AK144983|Orc5|26429|origin recognition complex, subunit 5	NM_011959|Orc5|26429|origin recognition complex, subunit 5	AK165912|Orc5|26429|origin recognition complex, subunit 5	BC006927|Orc5|26429|origin recognition complex, subunit 5	AK084683|Orc5|26429|origin recognition complex, subunit 5
mm9_v1_chr10_-_93498488_93498564	0.0435657	SOX{8,9,10}.p2	AK036017|Vezt|215008|vezatin, adherens junctions transmembrane protein	NM_172538|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK041354|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK031848|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr2_-_125549883_125549883	0.0430784	SOX{8,9,10}.p2	AK036946|Shc4|271849|SHC (Src homology 2 domain containing) family, member 4	NM_199022|Shc4|271849|SHC (Src homology 2 domain containing) family, member 4
mm9_v1_chr18_+_32594823_32594898	0.0430653	SOX{8,9,10}.p2	AK077987|Bin1|30948|bridging integrator 1
mm9_v1_chr11_-_60230506_60230604	0.0426985	SOX{8,9,10}.p2	BC013607|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	AK078500|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	NM_145427|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2
mm9_v1_chr4_-_117852550_117852665	0.0425367	SOX{8,9,10}.p2	BC028866|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145947|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK054095|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145066|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_001161823|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_172382|Kdm4a|230674|lysine (K)-specific demethylase 4A
mm9_v1_chr16_-_18413549_18413586	0.0423016	SOX{8,9,10}.p2	NM_001111063|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr7_+_109044853_109044944	0.0422172	SOX{8,9,10}.p2	AK139635|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	NM_027532|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK135201|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK014309|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	BC080730|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene
mm9_v1_chr8_-_46495958_46495974	0.0412172	SOX{8,9,10}.p2	AK166177|Tlr3|142980|toll-like receptor 3
mm9_v1_chr9_+_108855789_108855789	0.0411956	SOX{8,9,10}.p2	NM_007738|Col7a1|12836|collagen, type VII, alpha 1	U32107|Col7a1|12836|collagen, type VII, alpha 1
mm9_v1_chr11_-_107209443_107209486	0.0407927	SOX{8,9,10}.p2	AK021206|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr8_-_46495663_46495754	0.0401472	SOX{8,9,10}.p2	AK171438|Tlr3|142980|toll-like receptor 3
mm9_v1_chr3_-_132897852_132897912	0.0394229	SOX{8,9,10}.p2	BC049886|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	NM_029953|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	AK020284|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38
mm9_v1_chr5_+_121099226_121099366	0.0389261	SOX{8,9,10}.p2	AK156050|Rasal1|19415|RAS protein activator like 1 (GAP1 like)	AF086714|Rasal1|19415|RAS protein activator like 1 (GAP1 like)
mm9_v1_chr17_+_23737822_23737907	0.0384473	SOX{8,9,10}.p2	AK141259|Zscan10|332221|zinc finger and SCAN domain containing 10	NM_001033425|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323929|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323930|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323931|Zscan10|332221|zinc finger and SCAN domain containing 10	EF152499|Zscan10|332221|zinc finger and SCAN domain containing 10	EF152500|Zscan10|332221|zinc finger and SCAN domain containing 10	BC068284|Zscan10|332221|zinc finger and SCAN domain containing 10
mm9_v1_chr9_+_110034489_110034583	0.0383276	SOX{8,9,10}.p2	NM_009211|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK143485|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144122|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK133922|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	U85614|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144631|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK145352|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK042194|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC056375|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC052423|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC053064|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC022173|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm9_v1_chr6_-_54921654_54921654	0.037771	SOX{8,9,10}.p2	AK089662|Nod1|107607|nucleotide-binding oligomerization domain containing 1	NM_001171007|Nod1|107607|nucleotide-binding oligomerization domain containing 1
mm9_v1_chrX_-_71481072_71481146	0.0370392	SOX{8,9,10}.p2	BC039208|Flna|192176|filamin, alpha
mm9_v1_chr11_+_51817722_51817929	0.0363392	SOX{8,9,10}.p2	AK046394|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_001166653|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_001166654|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_001166655|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_001166656|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_001166657|Cdkl3|213084|cyclin-dependent kinase-like 3	NM_153785|Cdkl3|213084|cyclin-dependent kinase-like 3	AK050990|Cdkl3|213084|cyclin-dependent kinase-like 3	AK078804|Cdkl3|213084|cyclin-dependent kinase-like 3	AK090045|Cdkl3|213084|cyclin-dependent kinase-like 3	AK045036|Cdkl3|213084|cyclin-dependent kinase-like 3	AK166428|Cdkl3|213084|cyclin-dependent kinase-like 3	AK045356|Cdkl3|213084|cyclin-dependent kinase-like 3	BC028871|Cdkl3|213084|cyclin-dependent kinase-like 3	AK186403|Cdkl3|213084|cyclin-dependent kinase-like 3	AK210497|Cdkl3|213084|cyclin-dependent kinase-like 3
mm9_v1_chr5_-_137774729_137774738	0.0360023	SOX{8,9,10}.p2	BC046982|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr4_-_14548903_14548926	0.0356305	SOX{8,9,10}.p2	BC026928|Slc26a7|208890|solute carrier family 26, member 7	AK054327|Slc26a7|208890|solute carrier family 26, member 7	NM_145947|Slc26a7|208890|solute carrier family 26, member 7
mm9_v1_chr8_-_87784612_87784676	0.0350849	SOX{8,9,10}.p2	AK219106|Vps35|65114|vacuolar protein sorting 35
mm9_v1_chr6_-_113327472_113327595	0.0342783	SOX{8,9,10}.p2	AK180989|Tada3|101206|transcriptional adaptor 3	BC022707|Tada3|101206|transcriptional adaptor 3	BC023879|Tada3|101206|transcriptional adaptor 3	BC026630|Tada3|101206|transcriptional adaptor 3	NM_133932|Tada3|101206|transcriptional adaptor 3
mm9_v1_chr8_-_97362140_97362260	0.0333974	SOX{8,9,10}.p2	AK088757|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	BC021864|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK146282|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK168252|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK076116|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK079615|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK163705|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK136821|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	NM_134141|Ciapin1|109006|cytokine induced apoptosis inhibitor 1
mm9_v1_chr6_-_137597775_137597813	0.0329389	SOX{8,9,10}.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr1_-_95532278_95532320	0.0329089	SOX{8,9,10}.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr6_+_113102884_113103027	0.0323242	SOX{8,9,10}.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr8_-_11678721_11678749	0.0318385	SOX{8,9,10}.p2	AK006019|1700016D06Rik|76413|RIKEN cDNA 1700016D06 gene	BC048664|1700016D06Rik|76413|RIKEN cDNA 1700016D06 gene	AY026045|1700016D06Rik|76413|RIKEN cDNA 1700016D06 gene	NM_024271|1700016D06Rik|76413|RIKEN cDNA 1700016D06 gene
mm9_v1_chr10_+_98725871_98725972	0.031771	SOX{8,9,10}.p2	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr18_+_12802276_12802325	0.0311977	SOX{8,9,10}.p2	BC020021|Ttc39c|72747|tetratricopeptide repeat domain 39C	AK013267|Ttc39c|72747|tetratricopeptide repeat domain 39C
mm9_v1_chr10_+_3366075_3366075	0.0309718	SOX{8,9,10}.p2	AK157384|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170800|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170801|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170802|Ipcef1|320495|interaction protein for cytohesin exchange factors 1
mm9_v1_chr9_-_50535949_50536088	0.0308431	SOX{8,9,10}.p2	AY549884|Dixdc1|330938|DIX domain containing 1	AK016205|Dixdc1|330938|DIX domain containing 1	BC048182|Dixdc1|330938|DIX domain containing 1	BC063085|Dixdc1|330938|DIX domain containing 1	AK164424|Dixdc1|330938|DIX domain containing 1	NM_178118|Dixdc1|330938|DIX domain containing 1
mm9_v1_chr4_-_116300068_116300103	0.0307131	SOX{8,9,10}.p2	BC004693|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AF095722|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AK008295|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AK083333|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	NM_001081475|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)
mm9_v1_chr10_+_7387285_7387382	0.0305362	SOX{8,9,10}.p2	AK146262|Nup43|69912|nucleoporin 43	NM_145706|Nup43|69912|nucleoporin 43	AK012191|Nup43|69912|nucleoporin 43	BC011060|Nup43|69912|nucleoporin 43	AK011422|Nup43|69912|nucleoporin 43	AK141339|Nup43|69912|nucleoporin 43	AK090019|Nup43|69912|nucleoporin 43	BC052530|Nup43|69912|nucleoporin 43
mm9_v1_chr18_+_37975071_37975186	0.0304223	SOX{8,9,10}.p2	AK139465|Pcdhgc4|93707|protocadherin gamma subfamily C, 4	AY013812|Pcdhgc4|93707|protocadherin gamma subfamily C, 4
mm9_v1_chr4_+_115410677_115410677	0.0302877	SOX{8,9,10}.p2	BC059213|4732418C07Rik|230648|RIKEN cDNA 4732418C07 gene	NM_172698|4732418C07Rik|230648|RIKEN cDNA 4732418C07 gene
mm9_v1_chr7_+_52960702_52960765	0.0300239	SOX{8,9,10}.p2	AK140243|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr14_-_56681093_56681151	0.0299919	SOX{8,9,10}.p2	AB051900|Mcpt4|17227|mast cell protease 4	X68804|Mcpt4|17227|mast cell protease 4	BC026198|Mcpt4|17227|mast cell protease 4	AK144385|Mcpt4|17227|mast cell protease 4	AY007569|Mcpt4|17227|mast cell protease 4	M55617|Mcpt4|17227|mast cell protease 4	NM_010779|Mcpt4|17227|mast cell protease 4
mm9_v1_chr10_-_90634236_90634341	0.0288405	SOX{8,9,10}.p2	U39073|Tmpo|21917|thymopoietin	U39078|Tmpo|21917|thymopoietin	U39074|Tmpo|21917|thymopoietin	U39075|Tmpo|21917|thymopoietin	U39076|Tmpo|21917|thymopoietin	U39077|Tmpo|21917|thymopoietin	AK150515|Tmpo|21917|thymopoietin	AK153281|Tmpo|21917|thymopoietin	AK150305|Tmpo|21917|thymopoietin	AK141845|Tmpo|21917|thymopoietin	AK156206|Tmpo|21917|thymopoietin	AK165282|Tmpo|21917|thymopoietin	AK151936|Tmpo|21917|thymopoietin	AK152737|Tmpo|21917|thymopoietin	AK165851|Tmpo|21917|thymopoietin	AK144642|Tmpo|21917|thymopoietin	AK146903|Tmpo|21917|thymopoietin	NM_001080129|Tmpo|21917|thymopoietin	NM_001080130|Tmpo|21917|thymopoietin	NM_001080131|Tmpo|21917|thymopoietin	NM_001080132|Tmpo|21917|thymopoietin	NM_001080134|Tmpo|21917|thymopoietin	NM_011605|Tmpo|21917|thymopoietin
mm9_v1_chr8_-_89996474_89996540	0.0286871	SOX{8,9,10}.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr16_-_3908647_3908696	0.0285379	SOX{8,9,10}.p2	AK012792|1700037C18Rik|73261|RIKEN cDNA 1700037C18 gene	AK161085|1700037C18Rik|73261|RIKEN cDNA 1700037C18 gene	NM_028484|1700037C18Rik|73261|RIKEN cDNA 1700037C18 gene
mm9_v1_chr1_-_173987681_173987726	0.0285255	SOX{8,9,10}.p2	M82874|Nhlh1|18071|nescient helix loop helix 1	BC051018|Nhlh1|18071|nescient helix loop helix 1	BC054760|Nhlh1|18071|nescient helix loop helix 1	AK149315|Nhlh1|18071|nescient helix loop helix 1	NM_010916|Nhlh1|18071|nescient helix loop helix 1
mm9_v1_chr5_+_88354611_88354672	0.0278201	SOX{8,9,10}.p2	AK021350|Csn3|12994|casein kappa	AK085710|Csn3|12994|casein kappa	AK164788|Csn3|12994|casein kappa	BC005653|Csn3|12994|casein kappa	BC035443|Csn3|12994|casein kappa	BC049949|Csn3|12994|casein kappa	BC004601|Csn3|12994|casein kappa	BC050269|Csn3|12994|casein kappa	AK142607|Csn3|12994|casein kappa	NM_007786|Csn3|12994|casein kappa	AK142673|Csn3|12994|casein kappa	M10114|Csn3|12994|casein kappa
mm9_v1_chr6_+_122258946_122259119	0.0271161	SOX{8,9,10}.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr2_+_78710638_78710757	0.0264875	SOX{8,9,10}.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr7_-_134565529_134565578	0.0263648	SOX{8,9,10}.p2	AK013037|Zfp688|69234|zinc finger protein 688	BC027683|Zfp688|69234|zinc finger protein 688	NM_026999|Zfp688|69234|zinc finger protein 688	AK170857|Zfp688|69234|zinc finger protein 688
mm9_v1_chr18_+_45719101_45719122	0.0261906	SOX{8,9,10}.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr8_+_112465553_112465555	0.0260062	SOX{8,9,10}.p2	AK146878|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr9_-_44817429_44817729	0.0258452	SOX{8,9,10}.p2	EF474454|Cd3e|12501|CD3 antigen, epsilon polypeptide	GU456631|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC098236|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC028636|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145926|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145954|Cd3e|12501|CD3 antigen, epsilon polypeptide	J02990|Cd3e|12501|CD3 antigen, epsilon polypeptide	NM_007648|Cd3e|12501|CD3 antigen, epsilon polypeptide	AK041607|Cd3e|12501|CD3 antigen, epsilon polypeptide
mm9_v1_chr4_-_118162385_118162453	0.0258318	SOX{8,9,10}.p2	AK052413|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK051512|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	NM_011587|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr17_-_72953646_72953646	0.0257606	SOX{8,9,10}.p2	AK051358|Alk|11682|anaplastic lymphoma kinase	NM_007439|Alk|11682|anaplastic lymphoma kinase
mm9_v1_chr12_+_58331420_58331438	0.0256251	SOX{8,9,10}.p2	AK168989|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	AK085510|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	AK050030|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	AK077915|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	AK163490|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)
mm9_v1_chr11_+_102291828_102291840	0.0250582	SOX{8,9,10}.p2	AK152944|Grn|14824|granulin	AK153183|Grn|14824|granulin	AK159397|Grn|14824|granulin	AK159428|Grn|14824|granulin	AK160074|Grn|14824|granulin	AK152118|Grn|14824|granulin	AK160022|Grn|14824|granulin	AK150420|Grn|14824|granulin	BC049943|Grn|14824|granulin	AK152213|Grn|14824|granulin	BC129849|Grn|14824|granulin	BC129850|Grn|14824|granulin	AK150338|Grn|14824|granulin	M86736|Grn|14824|granulin
mm9_v1_chr11_+_80196766_80196898	0.0247877	SOX{8,9,10}.p2	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr16_-_88290458_88290613	0.0241979	SOX{8,9,10}.p2	AK044420|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK044250|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK043737|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK048634|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK043542|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK133667|Grik1|14805|glutamate receptor, ionotropic, kainate 1	X66118|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK042635|Grik1|14805|glutamate receptor, ionotropic, kainate 1	NM_010348|Grik1|14805|glutamate receptor, ionotropic, kainate 1	NM_146072|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK046122|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK148296|Grik1|14805|glutamate receptor, ionotropic, kainate 1
mm9_v1_chr4_+_103292164_103292269	0.023705	SOX{8,9,10}.p2	BC051993|Dab1|13131|disabled homolog 1 (Drosophila)
mm9_v1_chr3_+_58219610_58219610	0.0233466	SOX{8,9,10}.p2	NM_001081229|Tsc22d2|72033|TSC22 domain family, member 2
mm9_v1_chr12_+_111903331_111903389	0.0223687	SOX{8,9,10}.p2	AK151489|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr10_+_59569084_59569159	0.0214532	SOX{8,9,10}.p2	AK140483|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	AK162941|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr13_+_33576658_33576683	0.0210776	SOX{8,9,10}.p2	AK005394|Serpinb9g|93806|serine (or cysteine) peptidase inhibitor, clade B, member 9g	NM_011455|Serpinb9g|93806|serine (or cysteine) peptidase inhibitor, clade B, member 9g	AF425083|Serpinb9g|93806|serine (or cysteine) peptidase inhibitor, clade B, member 9g	BC064758|Serpinb9g|93806|serine (or cysteine) peptidase inhibitor, clade B, member 9g	BC064759|Serpinb9g|93806|serine (or cysteine) peptidase inhibitor, clade B, member 9g
mm9_v1_chr14_-_31981780_31981787	0.0205645	SOX{8,9,10}.p2	AK149309|Stab1|192187|stabilin 1	AK159416|Stab1|192187|stabilin 1
mm9_v1_chr9_+_117161650_117161701	0.0199766	SOX{8,9,10}.p2	
mm9_v1_chr13_+_33415945_33415945	0.0199516	SOX{8,9,10}.p2	BC052216|Serpinb9f|20709|serine (or cysteine) peptidase inhibitor, clade B, member 9f	NM_183197|Serpinb9f|20709|serine (or cysteine) peptidase inhibitor, clade B, member 9f
mm9_v1_chr8_-_119606348_119606348	0.0197334	SOX{8,9,10}.p2	AY164484|Pkd1l2|76645|polycystic kidney disease 1 like 2	NM_029686|Pkd1l2|76645|polycystic kidney disease 1 like 2
mm9_v1_chr9_-_88376937_88377419	0.0195209	SOX{8,9,10}.p2	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr8_-_114516147_114516201	0.0184858	SOX{8,9,10}.p2	BC019976|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK039699|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK161044|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK035614|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK082399|Adat1|30947|adenosine deaminase, tRNA-specific 1	NM_013925|Adat1|30947|adenosine deaminase, tRNA-specific 1
mm9_v1_chr11_-_70135960_70136019	0.0182217	SOX{8,9,10}.p2	U39200|Alox12e|11685|arachidonate lipoxygenase, epidermal	AK138743|Alox12e|11685|arachidonate lipoxygenase, epidermal	BC013751|Alox12e|11685|arachidonate lipoxygenase, epidermal	BC051047|Alox12e|11685|arachidonate lipoxygenase, epidermal	NM_145684|Alox12e|11685|arachidonate lipoxygenase, epidermal	X99252|Alox12e|11685|arachidonate lipoxygenase, epidermal
mm9_v1_chr9_+_20467843_20467946	0.0179259	SOX{8,9,10}.p2	AK185654|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm9_v1_chr14_-_64147067_64147107	0.0174132	SOX{8,9,10}.p2	AF073881|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr1_+_167415313_167415432	0.0174009	SOX{8,9,10}.p2	AK029849|Adcy10|271639|adenylate cyclase 10	AK133181|Adcy10|271639|adenylate cyclase 10	NM_173029|Adcy10|271639|adenylate cyclase 10	AK015262|Adcy10|271639|adenylate cyclase 10	BC138448|Adcy10|271639|adenylate cyclase 10	BC145283|Adcy10|271639|adenylate cyclase 10
mm9_v1_chr15_-_58046428_58046480	0.0171693	SOX{8,9,10}.p2	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr11_+_43342241_43342329	0.0170867	SOX{8,9,10}.p2	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chr11_-_5052242_5052243	0.0169041	SOX{8,9,10}.p2	AK153702|Emid1|140703|EMI domain containing 1
mm9_v1_chr6_-_50332835_50332835	0.0165944	SOX{8,9,10}.p2	AK004768|Osbpl3|71720|oxysterol binding protein-like 3	AK037114|Osbpl3|71720|oxysterol binding protein-like 3	NM_027881|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr4_-_6917628_6917956	0.016572	SOX{8,9,10}.p2	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr15_-_76038682_76038682	0.0158663	SOX{8,9,10}.p2	AF188023|Plec|18810|plectin	AY480037|Plec|18810|plectin	NM_001164203|Plec|18810|plectin	NM_201388|Plec|18810|plectin
mm9_v1_chrX_+_34138224_34138276	0.0154036	SOX{8,9,10}.p2	AF042491|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr4_+_132753616_132753740	0.0149915	SOX{8,9,10}.p2	
mm9_v1_chr3_+_14533787_14533872	0.014898	SOX{8,9,10}.p2	AK004646|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163579|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163580|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_028915|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138734|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138735|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC099680|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC061202|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK030355|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK016559|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK173256|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK029563|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1
mm9_v1_chr2_+_30093236_30093288	0.0144401	SOX{8,9,10}.p2	NM_177725|Lrrc8a|241296|leucine rich repeat containing 8A
mm9_v1_chr2_+_181099632_181099635	0.0142916	SOX{8,9,10}.p2	AK041491|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_144894|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr7_-_150646883_150646954	0.0139641	SOX{8,9,10}.p2	U22399|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	BC005412|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK077844|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK132278|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_001161624|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_009876|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr9_+_53345151_53345154	0.0132867	SOX{8,9,10}.p2	AK080294|Npat|244879|nuclear protein in the AT region	NM_001081152|Npat|244879|nuclear protein in the AT region
mm9_v1_chr14_-_100548982_100549014	0.0130652	SOX{8,9,10}.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr7_+_5996762_5996870	0.0129128	SOX{8,9,10}.p2	AK133284|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AY596194|Nlrp4c|83564|NLR family, pyrin domain containing 4C	NM_031389|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AK166817|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AK166869|Nlrp4c|83564|NLR family, pyrin domain containing 4C
mm9_v1_chr11_+_4086804_4086893	0.0127273	SOX{8,9,10}.p2	AK140872|Tbc1d10a|103724|TBC1 domain family, member 10a	AK220243|Tbc1d10a|103724|TBC1 domain family, member 10a	BC018300|Tbc1d10a|103724|TBC1 domain family, member 10a	NM_134023|Tbc1d10a|103724|TBC1 domain family, member 10a	AK153677|Tbc1d10a|103724|TBC1 domain family, member 10a	BC037230|Tbc1d10a|103724|TBC1 domain family, member 10a
mm9_v1_chr13_+_27149438_27149473	0.0120548	SOX{8,9,10}.p2	NM_001163530|Prl|19109|prolactin	NM_011164|Prl|19109|prolactin	AK017547|Prl|19109|prolactin	AK161619|Prl|19109|prolactin	AK077493|Prl|19109|prolactin	AK017520|Prl|19109|prolactin	X04418|Prl|19109|prolactin	AK017521|Prl|19109|prolactin	AK017579|Prl|19109|prolactin	AK017584|Prl|19109|prolactin	AK133645|Prl|19109|prolactin	AK133736|Prl|19109|prolactin	AK133752|Prl|19109|prolactin	AK161553|Prl|19109|prolactin	AK161557|Prl|19109|prolactin	AK161565|Prl|19109|prolactin	AK161594|Prl|19109|prolactin	BC061141|Prl|19109|prolactin	X02892|Prl|19109|prolactin	AK017562|Prl|19109|prolactin
mm9_v1_chr12_-_88443285_88443488	0.0114066	SOX{8,9,10}.p2	AJ245945|Ngb|64242|neuroglobin	AK165775|Ngb|64242|neuroglobin	AK140173|Ngb|64242|neuroglobin	BC024263|Ngb|64242|neuroglobin	NM_022414|Ngb|64242|neuroglobin
mm9_v1_chr2_+_81893814_81893814	0.0111995	SOX{8,9,10}.p2	AK049881|Zfp804a|241514|zinc finger protein 804A	NM_175513|Zfp804a|241514|zinc finger protein 804A
mm9_v1_chr13_+_78337168_78337277	0.0106435	SOX{8,9,10}.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr15_+_83610459_83610521	0.0105517	SOX{8,9,10}.p2	AK165755|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr7_-_14708338_14708398	0.0089106	SOX{8,9,10}.p2	NM_001101586|Sult2a3|629203|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
mm9_v1_chr13_-_70980619_70980688	0.00809031	SOX{8,9,10}.p2	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr3_+_105776628_105776733	0.00808077	SOX{8,9,10}.p2	BC137995|Ovgp1|12659|oviductal glycoprotein 1	AK054141|Ovgp1|12659|oviductal glycoprotein 1	D32137|Ovgp1|12659|oviductal glycoprotein 1	NM_007696|Ovgp1|12659|oviductal glycoprotein 1	AY521455|Ovgp1|12659|oviductal glycoprotein 1
mm9_v1_chr7_+_94395160_94395355	0.00800686	SOX{8,9,10}.p2	AK169304|Nox4|50490|NADPH oxidase 4	AK087097|Nox4|50490|NADPH oxidase 4	AF261944|Nox4|50490|NADPH oxidase 4	AF276957|Nox4|50490|NADPH oxidase 4	AK050371|Nox4|50490|NADPH oxidase 4	AK085509|Nox4|50490|NADPH oxidase 4	AK149398|Nox4|50490|NADPH oxidase 4	AK149455|Nox4|50490|NADPH oxidase 4	AK149492|Nox4|50490|NADPH oxidase 4	NM_015760|Nox4|50490|NADPH oxidase 4	AK052905|Nox4|50490|NADPH oxidase 4	AB041034|Nox4|50490|NADPH oxidase 4	AB042745|Nox4|50490|NADPH oxidase 4	AF218723|Nox4|50490|NADPH oxidase 4	BC138918|Nox4|50490|NADPH oxidase 4	BC145462|Nox4|50490|NADPH oxidase 4	BC021378|Nox4|50490|NADPH oxidase 4	EU861989|Nox4|50490|NADPH oxidase 4
mm9_v1_chr7_-_18940223_18940355	0.00752276	SOX{8,9,10}.p2	AF128236|Psg18|26438|pregnancy specific glycoprotein 18	M83346|Psg18|26438|pregnancy specific glycoprotein 18	BC138857|Psg18|26438|pregnancy specific glycoprotein 18	AK167661|Psg18|26438|pregnancy specific glycoprotein 18	NM_001163685|Psg18|26438|pregnancy specific glycoprotein 18	NM_011963|Psg18|26438|pregnancy specific glycoprotein 18
mm9_v1_chr13_+_51196154_51196300	0.00721526	SOX{8,9,10}.p2	AK168544|Spin1|20729|spindlin 1	NM_146043|Spin1|20729|spindlin 1	BC016517|Spin1|20729|spindlin 1	AK134259|Spin1|20729|spindlin 1
mm9_v1_chr19_-_36994088_36994132	0.00720774	SOX{8,9,10}.p2	BC055778|Fgfbp3|72514|fibroblast growth factor binding protein 3	NM_028263|Fgfbp3|72514|fibroblast growth factor binding protein 3	AK167949|Fgfbp3|72514|fibroblast growth factor binding protein 3
mm9_v1_chr15_+_88430731_88430757	0.00694333	SOX{8,9,10}.p2	BC049767|Zdhhc25|70073|zinc finger, DHHC domain containing 25	NM_027306|Zdhhc25|70073|zinc finger, DHHC domain containing 25	AK006552|Zdhhc25|70073|zinc finger, DHHC domain containing 25	AK131706|Zdhhc25|70073|zinc finger, DHHC domain containing 25
mm9_v1_chr2_-_101489613_101489698	0.00678241	SOX{8,9,10}.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr2_+_157563136_157563225	0.00636204	SOX{8,9,10}.p2	NM_025680|Ctnnbl1|66642|catenin, beta like 1	BC050787|Ctnnbl1|66642|catenin, beta like 1	AY009405|Ctnnbl1|66642|catenin, beta like 1	AK145888|Ctnnbl1|66642|catenin, beta like 1	AK146274|Ctnnbl1|66642|catenin, beta like 1	AK145147|Ctnnbl1|66642|catenin, beta like 1	AK077616|Ctnnbl1|66642|catenin, beta like 1	AK145598|Ctnnbl1|66642|catenin, beta like 1	AK145719|Ctnnbl1|66642|catenin, beta like 1	AK044690|Ctnnbl1|66642|catenin, beta like 1	AK010547|Ctnnbl1|66642|catenin, beta like 1
mm9_v1_chr12_-_11157647_11157647	0.00596961	SOX{8,9,10}.p2	AK162957|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	NM_001168564|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm9_v1_chr19_+_56536148_56536166	0.00585738	SOX{8,9,10}.p2	BC090250|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chr9_-_102256709_102256791	0.0054884	SOX{8,9,10}.p2	AK036148|Ephb1|270190|Eph receptor B1
mm9_v1_chr2_+_120393393_120393485	0.00365869	SOX{8,9,10}.p2	AK019162|Snap23|20619|synaptosomal-associated protein 23	NM_001177792|Snap23|20619|synaptosomal-associated protein 23	NM_001177793|Snap23|20619|synaptosomal-associated protein 23	NM_009222|Snap23|20619|synaptosomal-associated protein 23	AK171763|Snap23|20619|synaptosomal-associated protein 23	AK017311|Snap23|20619|synaptosomal-associated protein 23	BC070456|Snap23|20619|synaptosomal-associated protein 23	AB007444|Snap23|20619|synaptosomal-associated protein 23
mm9_v1_chr12_+_75098739_75098790	0.00361918	SOX{8,9,10}.p2	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr3_-_113277601_113277686	0.00313434	SOX{8,9,10}.p2	AK029642|Amy1|11722|amylase 1, salivary	NM_007446|Amy1|11722|amylase 1, salivary	V00719|Amy1|11722|amylase 1, salivary
mm9_v1_chr9_+_108698323_108698461	0.00300982	SOX{8,9,10}.p2	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr12_+_58331452_58331495	0.00284577	SOX{8,9,10}.p2	AK044766|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	BC110357|Prps1l3|328099|phosphoribosyl pyrophosphate synthetase 1-like 3
mm9_v1_chr3_+_90070455_90070469	0.00279789	SOX{8,9,10}.p2	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr15_+_28133520_28133520	0.00252109	SOX{8,9,10}.p2	AF466704|Dnahc5|110082|dynein, axonemal, heavy chain 5	AK054152|Dnahc5|110082|dynein, axonemal, heavy chain 5	NM_133365|Dnahc5|110082|dynein, axonemal, heavy chain 5
mm9_v1_chr13_-_14155631_14155710	0.00135447	SOX{8,9,10}.p2	BC006798|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK132907|Ggps1|14593|geranylgeranyl diphosphate synthase 1	BC069913|Ggps1|14593|geranylgeranyl diphosphate synthase 1	NM_010282|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK007605|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK089026|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK011980|Ggps1|14593|geranylgeranyl diphosphate synthase 1
mm9_v1_chr9_+_14664653_14664697	0.00094599	SOX{8,9,10}.p2	AK035356|Gpr83|14608|G protein-coupled receptor 83	AK041527|Gpr83|14608|G protein-coupled receptor 83	AK081276|Gpr83|14608|G protein-coupled receptor 83	M80481|Gpr83|14608|G protein-coupled receptor 83	NM_010287|Gpr83|14608|G protein-coupled receptor 83
mm9_v1_chr5_+_36807807_36807839	0.000239875	SOX{8,9,10}.p2	AK161688|Grpel1|17713|GrpE-like 1, mitochondrial	AK048732|Grpel1|17713|GrpE-like 1, mitochondrial	NM_024478|Grpel1|17713|GrpE-like 1, mitochondrial	AK089113|Grpel1|17713|GrpE-like 1, mitochondrial	AK050445|Grpel1|17713|GrpE-like 1, mitochondrial
mm9_v1_chr5_+_95902559_95902571	4.21974e-05	SOX{8,9,10}.p2	NM_001122678|Gm3286|100041354|predicted gene 3286	NM_001167792|Gm3286|100041354|predicted gene 3286	NM_001167793|Gm3286|100041354|predicted gene 3286	BC099941|D5Ertd577e|320549|DNA segment, Chr 5, ERATO Doi 577, expressed
